Leishmaniasis is a disease circulating in endemic areas between sand flies (Diptera: Phlebotominae) and reservoir hosts, which - in the case of Leishmania major - are principally rodents (Rodentia). Unlike in human patients, leishmaniasis is often asymptomatic in animal hosts. For transmission and maintenance of the parasite in nature, infectiousness of hosts for sand flies is essential; and the only method to directly test the infectiousness is xenodiagnosis. The main objective of this thesis is to establish a laboratory model for studying xenodiagnosis with L. major on inbred BALB/c mice and then to apply this model to potential reservoir ro- dents from the genus Mastomys. BALB/c mice were infected by intradermal inoculation of infective stages of L. major (iso- lated from sand fly guts) together with salivary gland homogenates from Phlebotomus duboscqi; infected mice were then exposed to P. duboscqi females for a period of ten weeks. Two inbred lines of BALB/c mice differed significantly in both the manifestation of the disease and infectiousness for sandflies. In BALB/c OlaHsdmice, great lesions were formed (up to 10 mm), mice were able to infect sand flies from the 2nd week after infection and their infec- tiousness reached up to 20.1% during the experiment. In BALB/c AnNCrl mice, only small...

MSc (Zoology) / Department of Zoology / The adverse ecological effects of landscape modification by humans are well known and continue to be studied. Habitat disturbances arising from such modifications result in various levels of biodiversity loss. Amongst mammals, large carnivores are usually the first to disappear, leaving a gap in the trophic pyramid. However, ecologically adaptive small carnivores, free from the effects of intraguild predation can readily fill this gap (i.e. mesopredator release). In highly productive disturbed habitats, small mammals may thrive, reaching densities that can support an abundant and diverse suite of small carnivores. After frequent sightings of serval (Leptailurus serval) on the highly disturbed Sasol Synfuels Operations property, three camera trap surveys were conducted between 2014 and 2015 to study its ecology. The resulting data was subsequently used to study the site’s small carnivores. Multispecies occupancy modelling was used to determine detection (p) and occupancy (ψ) probabilities and estimate species richness across the study area. Site-specific covariates were then modelled against abundance values to identify any correlations. Out of 23 small carnivore species predicted to occur on the site, 11 were detected. Spatially, estimated species richness was highest in disturbed habitats, while it was slightly lower in Grassland possibly due to undersampling. Detection and occupancy probabilities were low (except for serval), with interspecies variations. It is suspected that this is the result of survey bias towards serval. The only covariate showing any significant effect was livestock presence, negatively affecting serval occupancy. Estimated species richness was used as a proxy to identify high- or low-predation areas. Within these areas, three vegetation treatments were selected (low, medium and high cover). Small mammal foraging behaviour under varying predation pressures within these treatments was then studied using the giving-up density (GUD) framework. Differences in GUDs were examined using generalised linear mixed models (GLMM). Small mammal trapping in the study area showed that four-striped grass mouse (Rhabdomys sp.; diurnal) and multimammate mouse (Mastomys sp.; nocturnal) were dominant. Nocturnal GUDs were lower than diurnal, which is interesting as four-striped grass mice are more abundant than multimammate mice. This indicates that density alone does not influence GUDs. Additionally, no significant difference in GUDs was observed between predation and vegetation treatments. I suggest that observed GUDs are linked to individual or combined impacts of interspecific differences in foraging behaviour, metabolic requirements or temporal variations in perceived predation pressure. GUDs also varied between surveys, being lower in mid- compared to early winter. This might be attributable to decreased availability of food and greater metabolic requirements in mid-winter. The results show that modified landscapes (such as the study site) can contribute to biodiversity conservation, especially of small carnivores, the adaptability of which allows them to flourish in disturbed habitats. Under favourable conditions, ecologically flexible small mammal species seem to be unaffected by the risks associated with an abundance of small carnivores. While the processes governing the dynamics of predator and prey communities in disturbed systems are not entirely clear, the conservation potential of such areas cannot be ignored and deserves more attention from researchers. / NRF

Background: In order to optimize net transmission success, parasites are hypothesized to evolve towards causing minimal damage to their reservoir host while obtaining high shedding rates. For many parasite species however this paradigm has not been tested, and conflicting results have been found regarding the effect of arenaviruses on their rodent host species. The rodent Mastomys natalensis is the natural reservoir host of several arenaviruses, including Lassa virus that is known to cause Lassa haemorrhagic fever in humans. Here, we examined the effect of three arenaviruses (Gairo, Morogoro and Lassa virus) on four parameters of wild-caught Mastomys natalensis: body mass, head-body length, sexual maturity and fertility. After correcting for the effect of age, we compared these parameters between arenavirus-positive (arenavirus RNA or antibody) and negative animals using data from different field studies in Guinea (Lassa virus) and Tanzania (Morogoro and Gairo viruses). Results: Although the sample sizes of our studies (1297, 749 and 259 animals respectively) were large enough to statistically detect small differences in body conditions, we did not observe any adverse effects of these viruses on Mastomys natalensis. We did find that sexual maturity was significantly positively related with Lassa virus antibody presence until a certain age, and with Gairo virus antibody presence in general. Gairo virus antibody-positive animals were also significantly heavier and larger than antibody-free animals. Conclusion: Together, these results suggest that the pathogenicity of arenaviruses is not severe in M. natalensis, which is likely to be an adaptation of these viruses to optimize transmission success. They also suggest that sexual behaviour might increase the probability of M. natalensis to become infected with arenaviruses.

Das Ziel dieser Studie war, die Anzahl der Mastomys-Arten und ihrer geographischen Verbreitung in Namibia und Teilen von Botswana und Angola zu bestimmen. Der methodische Ansatz umfasst Schädel-Morphometrie, Karyotypisierung und Cytochrom-b-Gen-Sequenzierung. Traditionellen Morphometrie-Studie lieferten keine klaren morphologischen, wohingegen die geometrische Morphometrie-Analyse erfolgreicher war. Hier zeigten die Ergebnisse bei drei Spezies deutliche dorsale und ventrale Unterschiede in der Schädelform. Die Resultate der zytogenetischen und molekularen Methoden ergaben drei Formen von Mastomys mit unterschiedlichen Karyotypen und mtDNA. Diese wurden M. coucha (2n = 36, aFN = 60/60), M. natalensis (2n = 32, aFN = 57/58) und M. shortridgei (2n = 36, aFN = 51/52) zugeordnet. Die mtDNA Divergenz zwischen der Art M. coucha und M. shortridgei war relativ gering (1.3%), außerdem legte die „Moleküluhr“ (molecular clock) nahe, dass M. shortridgei ein aktueller Ableger von M. coucha (0.71 Mya) ist. Man nimmt an, dass der Paläo-Makgadikgadi See, im heutigen Botswana einen Großteil des östlichen Kalahari-Beckens bedeckte. Es könnte sein, dass Ausläufer früherer Populationen von M. shortridgei in Kontakt mit dem Paläo-Makgadikgadi See kammen und während des End-Pleistozäns bis zum frühen Holozän durch das Schrumpfen des Sees isoliert wurden. Im Laufe der Zeit haben sich die frühen Populationen von M. shortridgei an die lokalen sumpfigen Umweltbedingungen angepasst. M. coucha und M. natalensis haben eine klar begrenzte geografischen Verteilung in Namibia, dies scheint durch Niederschlag beeinflusst zu sein: M. coucha tritt vor allem in den niederschlagsarmen Gebieten von Zentral-Namibia auf, M. natalensis dagegen in den niederschlagsreichen Gebieten im nördlich-zentralen und nordöstlichen Namibia und erstreckt sich bis nach Angola und in das nördliche Botswana hinein. Die M. shortridgei-Proben wurden nur in den Okavango-Sümpfen gefunden. / Study aims to summarise the patterns of morphological, cytogenetic and genetic variation of genus Mastomys across the south-west arid region of southern Africa. The methodological approach included skull morphometrics, karyotyping and cytochrome-b gene sequencing. Traditional morphometrics study did not yield clear morphological differences between the three species. Geometric morphometrics analysis was more successful with clear differences, in the shape of the skulls based on landmarks from both the dorsal and ventral views. Results obtained with cytogenetical and molecular methods revealed three forms of Mastomys with different karyotypes and mtDNA clades. These were assigned to M. coucha (2n = 36, aFN = 60/60), M. natalensis (2n = 32, aFN = 57/58) and M. shortridgei (2n = 36, aFN = 51/52). The mtDNA divergence between the species M. coucha and M. shortridgei was relatively low (1.3%), additionally the molecular clock estimated M. shortridgei to be a recent off-shoot of M. coucha (0.71 Mya). It is estimated that the lake Palaeo-Makgadikgadi, in present day Botswana, covered much of the eastern Kalahari basin. It could be that the peripheral ancestral population of M. shortridgei came in contact with the lake Palaeo-Makgadikgadi and was isolated with the shrinking lake Palaeo-Makgadikgadi during the End-Pleistocene to Early Holocene. Over time ancestral populations of M. shortridgei became adapted to the local swampy environmental conditions. M. coucha and M. natalensis have distinct geographical distribution influenced by precipitation. M. coucha mainly occurs in the low rainfall areas of central Namibia, whereas M. natalensis occurs in higher rainfall areas of north-central and north-eastern Namibia, extending into Angola and northern Botswana. The M. shortridgei specimens were only trapped along the Okavango River swamps in northern Botswana and south-eastern Angola.

The primary aim of this study was to investigate the role of food supply and ground cover on the community structure, population dynamics and demography of terrestrial small mammals in a subtropical grassland. This aim was achieved through a series of food supplementation and cover manipulation experiments conducted at eKundizeni Farm near Matsapha, Swaziland, over a 28 month period. The effects of five different diets on the rodent Mastomys natalensis were investigated in the laboratory, and the results showed that rolled oats and rabbit pellets were suitable for growth and reproduction in this species. The effects of supplementary food were investigated on two supplemented grids and one control over a twelve month period. Small mammal biomass increased significantly on the supplemented grids in relation to the control. This increase in biomass was the result of a twofold increase in the numbers of M natalensis. Food supplementation further affected M. natalensis by: extending the breeding season of females; increasing body weight; increasing survival; and decreasing home range area. Food supplementation had a weak positive effect on the density of another rodent Lemniscomys rosalia, but did not affect any other demographic feature of this species. Food supplementation did not have a demographic effect on any other species of small mammal captured. The effects of vegetative cover were investigated, over a twelve month period, on two control grids and four manipulated grids on which the vegetative cover was mechanically reduced. Supplementary food was added to two of the latter four manipulated grids. The biomass of small mammals, including M. natalensis, was lower on grids with reduced vegetative cover than on the controls. However, food supplementation resulted in a significant increase in the biomass of M. natalensis on one of the manipulated grids. Hence, M. natalensis was induced to shift to a habitat with reduced cover by the provision of supplementary food. Additional information on the population dynamics, age structure, reproduction and diet of M natalensis, L. rosalia, Mus minutoides and Steatomys pratensis is also presented. / Thesis (Ph.D.)-University of Natal, Pietermaritzburg, 1997.

The main aim of the current study was to determine the prevalence and diversity of potentially zoonotic bacterial genera in accurately identified indigenous rodents from South Africa. Bacterial prevalence and diversity were determined by PCR amplification and sequence analyses. Rodents were molecularly identified by amplification and sequence analysis of the mitochondrial cytochrome b gene region. Three species (Aethomys ineptus, Mastomys coucha and Otomys angoniensis) belonging to murid species complexes were identified. Furthermore, phylogenetic analyses revealed that both the proposed subspecies (R. dilectus dilectus and R. d. chakae) within the recently erected Rhabdomys dilectus occur in Hammanskraal and at the University of Pretoria Experimental farm, both in the Gauteng Province of South Africa. An overall bacterial prevalence of 38.6 % was observed in kidney samples of commensal and natural indigenous rodents after molecular screening with broad range 16S rRNA gene primers. Nucleotide sequence analyses identified a diverse range of bacterial genera namely, Bartonella, Anaplasma, Helicobacter, Burkholderia, Streptococcus, Aerococcus and Lactobacillus. Some members of these genera have been identified as causative agents of human and animal diseases, being transmitted either through environmental contamination or through haematophagous arthropod vectors. Subsequent genus-specific bacterial screening focussed on vector-borne genera identified in the commensal and natural rodent populations sampled. Bartonella prevalence and genetic diversity was compared between a natural and commensal population of the southern multimammate mouse (M. coucha) using two gene regions (Citrate synthase gene and NADH dehydrogenase gamma subunit gene). A significantly higher infection prevalence was detected in the commensal population (92.9 %) as compared to the natural population (56.9 %). No differences however, were detected between infection status and the ectoparasite loads calculated for both rodent populations. Apart from several novel Bartonella strains identified in both M. coucha populations, phylogenetic analyses also identified a species of known zoonotic potential (B. elizabethae) in both populations. The present study represents one of the first to screen indigenous rodents for tick-borne members of the bacterial family Anaplasmataceae. Anaplasma bovis-like DNA was detected in five of the six rodent species sampled (A. ineptus, Lemniscomys rosalia, M. coucha, O. angoniensis and R. dilectus) at an overall prevalence of 39.2 %. The potentially zoonotic Ehrlichia ewingii was detected in M. coucha samples only at a prevalence of 5.3 %. The diverse bacterial genera detected in commensal and natural populations of indigenous rodents comprise members of zoonotic potential and agricultural significance, highlighting the importance of continuous disease surveillance of indigenous rodents. / Dissertation (MSc)--University of Pretoria, 2014. / National Research Foundation (NRF) / Zoology and Entomology / MSc / Unrestricted