Publicly available datasets in health science are often large and observational, in contrast to experimental datasets where a small number of data are collected in controlled experiments. Variables' causal relationships in the observational dataset are yet to be determined. However, there is a significant interest in health science to discover and analyze causal relationships from health data since identified causal relationships will greatly facilitate medical professionals to prevent diseases or to mitigate the negative effects of the disease. Recent advances in Computer Science, particularly in Bayesian networks, has initiated a renewed interest for causality research. Causal relationships can be possibly discovered through learning the network structures from data. However, the number of candidate graphs grows in a more than exponential rate with the increase of variables. Exact learning for obtaining the optimal structure is thus computationally infeasible in practice. As a result, heuristic approaches are imperative to alleviate the difficulty of computations. This research provides effective and efficient learning tools for local causal discoveries and novel methods of learning causal structures with a combination of background knowledge. Specifically in the direction of constraint based structural learning, polynomial-time algorithms for constructing causal structures are designed with first-order conditional independence. Algorithms of efficiently discovering non-causal factors are developed and proved. In addition, when the background knowledge is partially known, methods of graph decomposition are provided so as to reduce the number of conditioned variables. Experiments on both synthetic data and real epidemiological data indicate the provided methods are applicable to large-scale datasets and scalable for causal analysis in health data. Followed by the research methods and experiments, this dissertation gives thoughtful discussions on the reliability of causal discoveries computational health science research, complexity, and implications in health science research.

Lam Yuk Fai. / Thesis (M.Phil.)--Chinese University of Hong Kong, 2000. / Includes bibliographical references (leaves 41-43). / Abstracts in English and Chinese. / Chapter 1 --- Basic Concepts --- p.9 / Chapter 1.1 --- Survival data --- p.9 / Chapter 1.1.1 --- An example --- p.9 / Chapter 1.2 --- Some important functions --- p.11 / Chapter 1.2.1 --- Survival function --- p.12 / Chapter 1.2.2 --- Hazard function --- p.12 / Chapter 1.3 --- Cox Proportional Hazards Model --- p.13 / Chapter 1.3.1 --- A special case --- p.14 / Chapter 1.3.2 --- An example (continued) --- p.15 / Chapter 1.4 --- Extension of the Cox Proportional Hazards Model --- p.16 / Chapter 1.5 --- Bootstrap --- p.17 / Chapter 2 --- A New Method --- p.19 / Chapter 2.1 --- Introduction --- p.19 / Chapter 2.2 --- Definition of the test --- p.20 / Chapter 2.2.1 --- Our test statistic --- p.20 / Chapter 2.2.2 --- The alternative test statistic I --- p.22 / Chapter 2.2.3 --- The alternative test statistic II --- p.23 / Chapter 2.3 --- Variations of the test --- p.24 / Chapter 2.3.1 --- Restricted test --- p.24 / Chapter 2.3.2 --- Adjusting for other covariates --- p.26 / Chapter 2.4 --- Apply with bootstrap --- p.28 / Chapter 2.5 --- Examples --- p.29 / Chapter 2.5.1 --- Male mice data --- p.34 / Chapter 2.5.2 --- Stanford heart transplant data --- p.34 / Chapter 2.5.3 --- CGD data --- p.34 / Chapter 3 --- Large Sample Properties and Discussions --- p.35 / Chapter 3.1 --- Large sample properties and relationship to goodness of fit test --- p.35 / Chapter 3.1.1 --- Large sample properties of A and Ap --- p.35 / Chapter 3.1.2 --- Large sample properties of Ac and A --- p.36 / Chapter 3.2 --- Discussions --- p.37

This study presents the methodology for estimating the incidence rate from the age specific prevalence data of three different eye diseases. We consider both situations where the mortality may differ from one person to another, with and without the disease. The method used was developed by Marvin J. Podgor for estimating incidence rate from prevalence data. It delves into the application of logistic regression to obtain the smoothed prevalence rates that helps in obtaining incidence rate. The study concluded that the use of logistic regression can produce a meaningful model, and the incidence rates of these diseases were not affected by the assumption of differential mortality.

Indiana University-Purdue University Indianapolis (IUPUI) / Epidemiologic and clinical studies routinely collect longitudinal measures of multiple outcomes. These longitudinal outcomes can be used to establish the temporal order of relevant biological processes and their association with the onset of clinical symptoms. In the first part of this thesis, we proposed to use bivariate change point models for two longitudinal outcomes with a focus on estimating the correlation between the two change points. We adopted a Bayesian approach for parameter estimation and inference. In the second part, we considered the situation when time-to-event outcome is also collected along with multiple longitudinal biomarkers measured until the occurrence of the event or censoring. Joint models for longitudinal and time-to-event data can be used to estimate the association between the characteristics of the longitudinal measures over time and survival time. We developed a maximum-likelihood method to joint model multiple longitudinal biomarkers and a time-to-event outcome. In addition, we focused on predicting conditional survival probabilities and evaluating the predictive accuracy of multiple longitudinal biomarkers in the joint modeling framework. We assessed the performance of the proposed methods in simulation studies and applied the new methods to data sets from two cohort studies. / National Institutes of Health (NIH) Grants R01 AG019181, R24 MH080827, P30 AG10133, R01 AG09956.