Hyper-activation of N-methyl-D-aspartate receptors (NRs) is associated with excitotoxic cell death during secondary injury following traumatic brain injury (TBI). The efficiency of the NR is dependent on the location of receptors in membrane raft microdomains that provide a platform for coupling of NRs and effector proteins. In many neurodegenerative diseases, activation of the autophagy pathway has been suggested to contribute to glutamate excitotoxicity, but whether increased autophagy signaling contributes to pathology after TBI has not been defined. In these studies, I investigate whether membrane rafts mediate NR signaling and autophagy in cortices of adult male rats subjected to moderate TBI and in sham-operated controls. These studies demonstrate that membrane rafts of the normal rat cortex contain a novel multi-protein signaling complex that links the NR2B glutamate receptor and the autophagic protein Beclin 1. TBI caused a rapid disruption of this complex in which NR2B and pCaMKII were recruited to membrane microdomains. Alteration in NR2B-Beclin 1 association in membrane rafts resulted in activation of autophagy as demonstrated by increased expression of key autophagic proteins Beclin 1, ATG 5 and ATG 7, and significant increases in autophagic vacuoles in neurons of traumatized brains. Administration of the NR2B antagonist RO 25-6981 significantly blocked TBI-induced redistribution of NR2B signaling intermediates and Beclin 1 and delayed the increase in autophagy protein expression in traumatized cortices. Thus, stimulation of autophagy by NR2B signaling may be regulated by redistribution of Beclin 1 in membrane rafts after TBI.

No description available.

No description available.

Los ovocitos ováricos totalmente crecidos de anfibios están fisiológicamente arrestados en la profase de la primera división meiótica. La progesterona, a través de un proceso denominado maduración, induce el desarresto ovocitario que se traduce en la ruptura de la vesícula germinal (GVBD). Se acepta generalmente que la hormona desencadena la maduración por un mecanismo no genómico que involucra la inhibición de la adenilil ciclasa y la disminución del AMPc intracelular a través de la unión a un receptor ligado a la membrana plasmática. Como respuesta al estímulo hormonal se sintetiza la oncoproteína c-Mos cuya actividad biológica está mediada por la cascada de las proteínas activadas por mitógenos (MAPK). En conjunto con la activación de reguladores del ciclo celular estos caminos convergen en la activación del factor promotor de la maduración (MPF). Los rafts de membrana, en particular la estructura invaginada de las caveolae, podrían proporcionar un ambiente óptimo para la interacción entre la progesterona y el ovocito en la maduración meiótica. Sin embargo, las bases moleculares y los mecanismos de la posible participación de los microdominios caveolares en la transducción de señales de la maduración aún no han sido completamente dilucidados. En este trabajo de tesis se analizó el efecto de la maduración inducida por la progesterona sobre el contenido y la composición de los lípidos neutros y polares de las plaquetas vitelinas, organelas del ovocito de Bufo arenarum que cumplen un rol importante durante la embriogénesis. Se realizó un análisis cuantitativo de los lípidos y de las proteínas de las membranas de baja densidad aisladas de ovocitos ováricos y la identificación bioquímica y el estudio biofísico de los microdominios tipo-caveolares, como un requisito para comprender mejor sus funciones regulatorias. La metil-β-ciclodextrina (MβCD) se usó como herramienta para modular el colesterol celular con el fin de evaluar la participación de los rafts de membrana en la maduración inducida por progesterona y en la inducida por ceramida, disparador de la reiniciación de la meiosis en otras especies de anfibios. En particular, se indagó la vía de las MAPK en la señalización de la maduración meiótica. Se demostró que los lípidos de las plaquetas vitelinas están involucrados activamente en la reiniciación del ciclo meiótico lo que apoya la hipótesis de un rol dinámico de estas organelas. La maduración produjo una disminución en el contenido total de fosfolípidos fundamentalmente por la caída de fosfatidilcolina, un fosfolípido considerado esencial para que se complete la meiosis. Los principales cambios en el perfil de ácidos grasos se observaron en esfingomielina, en ácido fosfatídico y en los diacilgliceroles, lípidos bioactivos implicados en caminos de señalización celular. El tratamiento hormonal disminuyó el nivel de la esfingomielina plaquetaria lo que podría vincularse con su rol como precursor de ceramidas. Se pusieron a punto distintos métodos de aislamiento de microdominios de membrana y se logró obtener una fracción de membranas livianas en ausencia de detergentes. Se determinó que dicha fracción deriva de la membrana plasmática, está enriquecida en colesterol y en el gangliósido GM1 y presenta un nivel importante de esfingomielina. Las membranas livianas muestran un enriquecimiento en una caveolina de 21 kDa indicando la existencia de estructuras tipo-caveolares en el ovocito de Bufo arenarum. Además, están asociadas significativamente con las moléculas señales, c-Src y H-Ras. En estas membranas se encontró una banda proteica que, por espectrometría de masa, se identificó como la cadena pesada de la miosina no muscular planteando la posibilidad de una relación con el citoesqueleto. La depleción de colesterol, mediada por MβCD, afectó principalmente el nivel de colesterol de las membranas livianas alterando el orden lipídico y la localización de los marcadores moleculares de rafts, caveolina, c-Src y GM1, e inhibiendo la maduración de manera dosis-dependiente lo que sugiere que estos microdominios de membrana están involucrados en la inducción hormonal. La repleción de colesterol indicó una recuperación de la habilidad para madurar de los ovocitos tratados especialmente en la concentración de MβCD 25 mM en la cual la reversibilidad fue cercana al valor control. Se demostró que la ceramida es un inductor efectivo de la maduración que afecta la distribución de los marcadores moleculares de rafts en las fracciones de membrana. Por el contrario, la progesterona no parece afectar la integridad de los microdominios de membrana. En concordancia con la inhibición de la GVBD, el tratamiento con MβCD retardó la fosforilación en tirosinas y la activación de la p42 MAPK en la maduración inducida por progesterona. La presencia de los marcadores de rafts, caveolina, GM1, c-Src y H-Ras, y el hallazgo de moléculas señales de la cascada de las MAPK funcionalmente asociadas a las membranas livianas, sugieren que esta fracción enriquecida en microdominios tipo-caveolares puede, en parte, recrear eficazmente la señalización de la maduración. / Amphibian full-grown ovarian oocytes are physiologically arrested at the first meiotic prophase. Progesterone, through a mechanism called maturation, induces meiotic resumption represented by germinal vesicle breakdown (GVBD). It is generally accepted that progesterone hormone triggers maturation through a nongenomic mechanism that involves the inhibition of adenylyl cyclase and the reduction of intracellular cAMP by association with a plasma membrane receptor. As a response to the hormonal stimuli oncoprotein c-Mos is synthesized and its biological activity is mediated by the mitogen-activated protein kinase (MAPK) cascade. Together with the activation of cell cycle regulators, both pathways converge in the activation of the M-phase promoting factor (MPF). Membrane rafts, particularly the invaginated structure of caveolae, seems to provide an optimal environment for hormone binding leading to meiotic maturation. However, the molecular bases and the mechanisms of the posible caveolar microdomain involvement in maturation signal transduction pathways have not been fully elucidated to date. In the present thesis, the effect of progesterone-induced maturation on the quantity and composition of neutral and polar lipids of yolk platelets, organelles from Bufo arenarum oocyte that play an important role during embryogenesis, were analyzed. A quantitative analysis of lipids and proteins of low-density membranes isolated from ovarian oocytes and the biochemical identification and a biophysical study of caveolae-like microdomains were performed as a requisite to further understand how these domains carry out their regulatory functions. Methyl-β-cyclodextrin (MβCD) was thus used for cellular cholesterol modulation in order to assess the membrane raft involvement in maturation induced by progesterone and by ceramide, the latter being trigger of meiosis reinitiation in other amphibian species. We demonstrated that lipids from yolk platelets are actively involved in the resumption of the meiotic cell cycle supporting the hypothesis of a dynamic role for these organelles. Phospholipid content decreased mainly as a result of a fall at the level of phosphatidylcholine, a phospholipid considered crucial for the completion of meiosis. Fatty acid composition registered significant changes in sphingomyelin, phosphatidic acid and diacylglycerols, bioactive lipids involved in cellular signaling pathways. Hormonal treatment induced a decrease at sphingomyelin level that could be related to its role as ceramide precursor. Different isolation methods were assayed to obtain membrane microdomains and a light membrane fraction was obtained in the absence of detergents. Light membranes derive from the plasma membrane, show an enrichment in cholesterol and GM1 ganglioside, and evidence an important level of sphingomyelin. The finding of a 21 kDa caveolin enriched in light membranes indicates the presence of caveolae-like structures in Bufo arenarum oocytes. In support of this finding, signaling molecules as c-Src and H-Ras are significantly associated to this fraction. A protein band was found in these membranes and it was identified as a non-muscle myosin heavy chain by mass spectrometry suggesting possible membrane-cytoskeleton interactions. Cholesterol depletion mediated by MβCD affected mainly light membranes cholesterol level disturbing lipid order and localization of rafts markers, caveolin, c-Src, and GM1 and inhibiting maturation in a dose-dependent manner, thus suggesting that these membrane microdomains are involved in hormonal induction. Cholesterol repletion showed a recovery of the ability of MβCD-treated oocytes to mature, particularly at the 25 mM concentration at which reversibility was close to control level. We also demonstrated that ceramide is an effective inducer of maturation that affects the distribution of raft markers among membrane fractions. On the contrary, progesterone seems not to affect membrane microdomain integrity. In agreement with GVBD inhibition, MβCD treatment delayed tyrosine phosphorylation and p42 MAPK activation in progesterone-induced maturation. The presence of the rafts markers, caveolin, GM1, c-Src, and H-Ras, and the finding of signaling molecules from the MAPK cascade functionally associated to light membranes suggest that this fraction enriched in caveolae-like microdomains could efficiently recreate, at least in part, maturation signaling.

Proteomic characterization of human NK cell membrane microdomains. (in Czech) Bc. Alan Kádek (Department of Biochemistry, Faculty of Science, Charles University in Prague, Czech Republic) Natural killer (NK) cells are one of the important components of innate immune system. Their main function is to fight against tumors, virally infected or otherwise malformed cells. Plasma membranes of NK cells contain regions with specific lipid composition compared to the surrounding membrane (called membrane microdomains or rafts). Because of their lipid composition, microdomains preferentially accommodate some immunologically relevant proteins and play a role during cellular polarization and signalization. Characteristic feature of membrane microdomains is their partial resistance to solubilization by mild non-ionogenic detergents. In this thesis, microdomains were isolated in a detergent-resistant membrane fraction (DRM) from human NK-92MI cell line and from NK cells immunomagnetically enriched from peripheral blood of non-leukemic donors. For the isolation, Triton X-100 or Brij-98 detergent solubilization and ultracentrifugation in a sucrose density gradient was used. Protein composition of isolated DRMs was analyzed by mass spectrometry employing an LC-MALDI-TOF/TOF method. Protein lists generated in these...

Neste trabalho foi investigado o efeito da administração crônica de prolina sobre o conteúdo total de gangliosídios, fosfolipídios e de colesterol, assim como, sobre o perfil de gangliosídios no córtex, no hipocampo, no hipotálamo e no cerebelo de ratos. Também, foi avaliado o conteúdo e o perfil de gangliosídios nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex. Ratos Wistar foram divididos em dois grupos: 1) injetados subcutaneamente com solução 0,9% de NaCl (animais controle) e 2) injetados subcutaneamente com solução de prolina, em concentrações adequadas ao peso corporal (animais hiperprolinêmicos). Tanto a solução de prolina quanto a salina foram administradas do 6° ao 28° dia pós-natal. Doze horas após a última administração, os animais foram sacrificados mediante decapitação sem anestesia. As estruturas cerebrais foram dissecadas e em seguida homogeneizadas em clorofórmio:metanol na proporção 1:1 vpara a extração lipídica. As membranas sinápticas foram obtidas através de centrifugação diferencial e as frações solúvel e resistente a detergente foram isoladas através de tratamento das membranas com Triton X-100 a 4°C para investigação de microdomínios de membrana. Após a realização das análises, os resultados mostraram que os animais submetidos ao tratamento crônico com prolina apresentaram um marcado aumento no conteúdo de gangliosídios no córtex cerebral e no hipocampo, enquanto os conteúdos de fosfolipídios e de colesterol aumentaram somente no hipocampo. Além disso, os conteúdos destes compostos não foram alterados no hipotálamo e no cerebelo de animais hiperprolinêmicos. Por outro lado, o conteúdo de gangliosídios diminuiu nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex de animais hiperprolinêmicos. Embora os perfis de gangliosídios não tenham sido aparentemente modificados, as quantidades absolutas das espécies foram alteradas tanto no extrato total, como nos microdomínios de membrana obtidos do córtex. Estes dados revelam que o tratamento crônico com prolina afeta de forma distinta as diferentes regiões cerebrais quanto à composição lipídica das membranas celulares, refletindo-se sobre a distribuição de lipídios nos microdomínios de membrana do córtex. Entre as conseqüências destes fenômenos poderiam ser sugeridas modulações diferentes nas transmissões sinápticas que contribuiriam para o déficit cognitivo e/ou outras disfunções neurológicas presentes em pacientes com hiperprolinemia tipo II. / In the present work we investigated the effects of chronic proline administration on ganglioside, cholesterol and phospholipid total contents, as well as on ganglioside profile in cerebral cortex, hippocampus, hypothalamus and cerebellum of rats. We also evaluated the ganglioside content and profile in detergent- soluble and resistant fractions isolated from synaptic membranes obtained from cerebral cortex. Wistar rats were divided into two groups: 1) saline (control) and 2) proline injected (hyperprolinemic). Proline solution or saline were administered from 6th to 28th postnatal day, according to body weight. Twelve hours after the last injection, the animals were sacrificed by decapitation without anesthesia. Brain structures were homogenized with chlorophorm:methanol 1:1 for lipid extraction. Synaptic membrane was extracted by differential centrifugation and detergent- soluble and resistant fractions were isolated by cold Triton X-100 treatment. Results showed that rats subjected to chronic proline treatment presented a significant increase of ganglioside content on cortex and hippocampus, while phospholipid and cholesterol contents only increased in hippocampus. However, the content of these components were not altered in hypothalamus and cerebellum of hyperprolinemic rats. On the other hand, ganglioside content decreased in detergent- soluble and resistant fractions isolated from synaptic membrane obtained from hyperprolinemic cortex. Although ganglioside profiles were apparently not modified, the individual absolute quantities were altered in cortex total lipid extract and membrane microdomains obtained from cerebral cortex. Our findings suggest that chronic proline treatment affects, in a distinct manner, different cerebral regions concerning the lipid composition of the cell membranes, reflecting on its distribution in the cortex membrane microdomains. Among these phenomena consequences, different modulations in synaptic transmission may be suggested which may contribute to the impairment in cognition and/or other neurological disfunctions found in hyperprolinemia type II patients.

Neste trabalho foi investigado o efeito da administração crônica de prolina sobre o conteúdo total de gangliosídios, fosfolipídios e de colesterol, assim como, sobre o perfil de gangliosídios no córtex, no hipocampo, no hipotálamo e no cerebelo de ratos. Também, foi avaliado o conteúdo e o perfil de gangliosídios nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex. Ratos Wistar foram divididos em dois grupos: 1) injetados subcutaneamente com solução 0,9% de NaCl (animais controle) e 2) injetados subcutaneamente com solução de prolina, em concentrações adequadas ao peso corporal (animais hiperprolinêmicos). Tanto a solução de prolina quanto a salina foram administradas do 6° ao 28° dia pós-natal. Doze horas após a última administração, os animais foram sacrificados mediante decapitação sem anestesia. As estruturas cerebrais foram dissecadas e em seguida homogeneizadas em clorofórmio:metanol na proporção 1:1 vpara a extração lipídica. As membranas sinápticas foram obtidas através de centrifugação diferencial e as frações solúvel e resistente a detergente foram isoladas através de tratamento das membranas com Triton X-100 a 4°C para investigação de microdomínios de membrana. Após a realização das análises, os resultados mostraram que os animais submetidos ao tratamento crônico com prolina apresentaram um marcado aumento no conteúdo de gangliosídios no córtex cerebral e no hipocampo, enquanto os conteúdos de fosfolipídios e de colesterol aumentaram somente no hipocampo. Além disso, os conteúdos destes compostos não foram alterados no hipotálamo e no cerebelo de animais hiperprolinêmicos. Por outro lado, o conteúdo de gangliosídios diminuiu nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex de animais hiperprolinêmicos. Embora os perfis de gangliosídios não tenham sido aparentemente modificados, as quantidades absolutas das espécies foram alteradas tanto no extrato total, como nos microdomínios de membrana obtidos do córtex. Estes dados revelam que o tratamento crônico com prolina afeta de forma distinta as diferentes regiões cerebrais quanto à composição lipídica das membranas celulares, refletindo-se sobre a distribuição de lipídios nos microdomínios de membrana do córtex. Entre as conseqüências destes fenômenos poderiam ser sugeridas modulações diferentes nas transmissões sinápticas que contribuiriam para o déficit cognitivo e/ou outras disfunções neurológicas presentes em pacientes com hiperprolinemia tipo II. / In the present work we investigated the effects of chronic proline administration on ganglioside, cholesterol and phospholipid total contents, as well as on ganglioside profile in cerebral cortex, hippocampus, hypothalamus and cerebellum of rats. We also evaluated the ganglioside content and profile in detergent- soluble and resistant fractions isolated from synaptic membranes obtained from cerebral cortex. Wistar rats were divided into two groups: 1) saline (control) and 2) proline injected (hyperprolinemic). Proline solution or saline were administered from 6th to 28th postnatal day, according to body weight. Twelve hours after the last injection, the animals were sacrificed by decapitation without anesthesia. Brain structures were homogenized with chlorophorm:methanol 1:1 for lipid extraction. Synaptic membrane was extracted by differential centrifugation and detergent- soluble and resistant fractions were isolated by cold Triton X-100 treatment. Results showed that rats subjected to chronic proline treatment presented a significant increase of ganglioside content on cortex and hippocampus, while phospholipid and cholesterol contents only increased in hippocampus. However, the content of these components were not altered in hypothalamus and cerebellum of hyperprolinemic rats. On the other hand, ganglioside content decreased in detergent- soluble and resistant fractions isolated from synaptic membrane obtained from hyperprolinemic cortex. Although ganglioside profiles were apparently not modified, the individual absolute quantities were altered in cortex total lipid extract and membrane microdomains obtained from cerebral cortex. Our findings suggest that chronic proline treatment affects, in a distinct manner, different cerebral regions concerning the lipid composition of the cell membranes, reflecting on its distribution in the cortex membrane microdomains. Among these phenomena consequences, different modulations in synaptic transmission may be suggested which may contribute to the impairment in cognition and/or other neurological disfunctions found in hyperprolinemia type II patients.

Neste trabalho foi investigado o efeito da administração crônica de prolina sobre o conteúdo total de gangliosídios, fosfolipídios e de colesterol, assim como, sobre o perfil de gangliosídios no córtex, no hipocampo, no hipotálamo e no cerebelo de ratos. Também, foi avaliado o conteúdo e o perfil de gangliosídios nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex. Ratos Wistar foram divididos em dois grupos: 1) injetados subcutaneamente com solução 0,9% de NaCl (animais controle) e 2) injetados subcutaneamente com solução de prolina, em concentrações adequadas ao peso corporal (animais hiperprolinêmicos). Tanto a solução de prolina quanto a salina foram administradas do 6° ao 28° dia pós-natal. Doze horas após a última administração, os animais foram sacrificados mediante decapitação sem anestesia. As estruturas cerebrais foram dissecadas e em seguida homogeneizadas em clorofórmio:metanol na proporção 1:1 vpara a extração lipídica. As membranas sinápticas foram obtidas através de centrifugação diferencial e as frações solúvel e resistente a detergente foram isoladas através de tratamento das membranas com Triton X-100 a 4°C para investigação de microdomínios de membrana. Após a realização das análises, os resultados mostraram que os animais submetidos ao tratamento crônico com prolina apresentaram um marcado aumento no conteúdo de gangliosídios no córtex cerebral e no hipocampo, enquanto os conteúdos de fosfolipídios e de colesterol aumentaram somente no hipocampo. Além disso, os conteúdos destes compostos não foram alterados no hipotálamo e no cerebelo de animais hiperprolinêmicos. Por outro lado, o conteúdo de gangliosídios diminuiu nas frações solúvel e resistente a detergente obtidas de membranas sinápticas de córtex de animais hiperprolinêmicos. Embora os perfis de gangliosídios não tenham sido aparentemente modificados, as quantidades absolutas das espécies foram alteradas tanto no extrato total, como nos microdomínios de membrana obtidos do córtex. Estes dados revelam que o tratamento crônico com prolina afeta de forma distinta as diferentes regiões cerebrais quanto à composição lipídica das membranas celulares, refletindo-se sobre a distribuição de lipídios nos microdomínios de membrana do córtex. Entre as conseqüências destes fenômenos poderiam ser sugeridas modulações diferentes nas transmissões sinápticas que contribuiriam para o déficit cognitivo e/ou outras disfunções neurológicas presentes em pacientes com hiperprolinemia tipo II. / In the present work we investigated the effects of chronic proline administration on ganglioside, cholesterol and phospholipid total contents, as well as on ganglioside profile in cerebral cortex, hippocampus, hypothalamus and cerebellum of rats. We also evaluated the ganglioside content and profile in detergent- soluble and resistant fractions isolated from synaptic membranes obtained from cerebral cortex. Wistar rats were divided into two groups: 1) saline (control) and 2) proline injected (hyperprolinemic). Proline solution or saline were administered from 6th to 28th postnatal day, according to body weight. Twelve hours after the last injection, the animals were sacrificed by decapitation without anesthesia. Brain structures were homogenized with chlorophorm:methanol 1:1 for lipid extraction. Synaptic membrane was extracted by differential centrifugation and detergent- soluble and resistant fractions were isolated by cold Triton X-100 treatment. Results showed that rats subjected to chronic proline treatment presented a significant increase of ganglioside content on cortex and hippocampus, while phospholipid and cholesterol contents only increased in hippocampus. However, the content of these components were not altered in hypothalamus and cerebellum of hyperprolinemic rats. On the other hand, ganglioside content decreased in detergent- soluble and resistant fractions isolated from synaptic membrane obtained from hyperprolinemic cortex. Although ganglioside profiles were apparently not modified, the individual absolute quantities were altered in cortex total lipid extract and membrane microdomains obtained from cerebral cortex. Our findings suggest that chronic proline treatment affects, in a distinct manner, different cerebral regions concerning the lipid composition of the cell membranes, reflecting on its distribution in the cortex membrane microdomains. Among these phenomena consequences, different modulations in synaptic transmission may be suggested which may contribute to the impairment in cognition and/or other neurological disfunctions found in hyperprolinemia type II patients.

Indiana University-Purdue University Indianapolis (IUPUI) / Omega-3 polyunsaturated fatty acids (n-3 PUFAs) relieve the symptoms of a wide variety of chronic inflammatory disorders. Typically, they must be obtained in the diet from sources such as fish oils. Docosahexaenoic acid (DHA) is one of these n-3 PUFAs. As yet the structural mechanism responsible for the health benefits within the body is not completely understood. One model that has emerged from biochemical and imaging studies of cells suggests that n-3 PUFAs are taken up into phospholipids in the plasma membrane. Thus the focus here is on the plasma membrane as a site of potential structural modification by DHA. Within cellular membranes, the huge variety of molecules (called lipids) which constitute the membrane suggest inhomogeneous mixing, thus domain formation. One potential domain of interest is called the lipid raft, which is primarily composed of sphingomyelin (SM) and cholesterol (chol). Here the molecular organization of [2H31]-N-palmitoylsphingomyelin (PSM-d31) mixed with 1-palmitoyl-2-docosahexaenoylphosphatylcholine (PDPC) or 1-palmitoyl-2-oleoylphosphatidylcholine (POPC), as a monounsaturated control, and cholesterol (chol) (1:1:1 mol) in a model membrane was examined by solid state 2H NMR spectroscopy. Solid state 2H NMR spectroscopy extracts details of molecular orientation and anisotropy of molecular reorientation by analysis of the lineshape. This essentially non-invasive technique allows for a direct measurement of dynamics in bulk materials which has been extensively applied to biological materials. It is a niche area of NMR for which standard software often lack necessary features. Two software programs, “EchoNMR processor” and “EchoNMR simulator”, collectively known as “EchoNMR tools”, that were developed to quickly process and analyze one-dimensional solid-state NMR data, will be described along with some theoretical background of the techniques used. EchoNMR tools has been designed with a focus on usability and the open-source mindset. This is achieved in the in the MATLAB® programming environment which allows for the development of the graphical user interfaces and runs as an interpreter which allows the code to be open-source. The research described here on model membranes demonstrates the utility of the software. The NMR spectra for PSM-d31 in mixtures with PDPC or POPC with cholesterol were interpreted in terms of the presence of nano-sized SM-rich/chol-rich (raft-like) and PC-rich/chol-poor (non-raft) domains that become larger when POPC was replaced by PDPC. An increase in the differential in order and/or thickness between the two types of domains is responsible. The observation of separate signals from PSM-d31, and correspondingly from [3α-2H1]cholesterol (chol-d1) and 1-[2H31]palmitoyl-2-docosahexaenoylphosphatidylcholine (PDPC-d31), attributed to the raft-like and non-raft domains enabled the determination of the composition of the domains. Most of the SM (84%) and cholesterol (88%) was found in the raft-like domain. There was also a substantial amount of PDPC (70%) in the raft-like domain that appears to have minimal effect on the order of SM. PDPC molecules sequestering into small groups to minimize the contact of DHA chains with cholesterol is one possible explanation that would also have implications on raft continuity. These results refine the understanding of how DHA may modulate the structure of raft domains in membranes.

La phagocytose est un processus par lequel des cellules spécialisées du système immunitaire comme les macrophages ingèrent des microorganismes envahisseurs afin de les détruire. Les microbes phagocytés se retrouvent dans un compartiment intracellulaire nommé le phagosome, qui acquiert graduellement de nombreuses molécules lui permettant de se transformer en phagolysosome possédant la capacité de tuer et dégrader son contenu. L’utilisation de la protéomique a permis de mettre en évidence la présence de microdomaines (aussi nommés radeaux lipidiques ou radeaux membranaires) sur les phagosomes des macrophages. Notre équipe a démontré que ces radeaux exercent des fonctions cruciales au niveau de la membrane du phagosome. D’abord nous avons observé que la survie du parasite intracellulaire L. donovani est possible dans un phagosome dépourvu de radeaux lipidiques. Parallèlement nous avons constaté qu’un mutant de L. donovani n’exprimant pas de LPG à sa surface(LPG-) est rapidement tué dans un phagosome arborant des radeaux membranaires. Pour comprendre le mécanisme de perturbation des microdomaines du phagosome par la molécule LPG, nous avons provoqué la phagocytose de mutants LPG- du parasite et comparé par microscopie les différences avec le parasite de type sauvage. Nous avons ainsi démontré que le LPG de L. donovani est nécessaire et suffisant au parasite pour empêcher la maturation normale du phagosome. Nous avons également découvert que la molécule LPG permet d’empêcher la formation des radeaux lipidiques sur le phagosome et peut aussi désorganiser les radeaux lipidiques préexistants. Enfin, nous avons montré que l’action de LPG est proportionnelle au nombre d’unités répétitives de sucres (Gal(β1,4)-Manα1-PO4) qui composent cette molécule. Nos travaux ont démontré pour la première fois le rôle important de ces sous-domaines membranaires dans la maturation du phagosome. De plus, nos conclusions seront des pistes à suivre au cours des études cliniques ayant pour but d’enrayer la leishmaniose. Le second objectif de ce travail consistait à effectuer la caractérisation des radeaux lipidiques par une analyse protéomique et lipidomique à l’aide de la spectrométrie de masse. Nous avons ainsi entrepris l’identification systématique des protéines présentes dans les radeaux membranaires des phagosomes et ce, à trois moments clés de leurmaturation. Le traitement des phagosomes purifiés avec un détergent nous a permis d’isoler les «Detergent Resistent Membranes» (DRMs) des phagosomes, qui sont l’équivalent biochimique des radeaux membranaires. Nous avons ainsi établi une liste de 921 protéines associées au phagosome, dont 352 sont présentes dans les DRMs. Les protéines du phagosome sont partagées presque également entre trois tendances cinétiques (augmentation, diminution et présence transitoire). Cependant, une analyse plus spécifique des protéines des DRMs démontre qu’une majorité d’entre elles augmentent en fonction de la maturation. Cette observation ainsi que certains de nos résultats montrent que les radeaux lipidiques des phagosomes précoces sont soit très peu nombreux, soit pauvres en protéines, et qu’ils sont recrutés au cours de la maturation du phagosome. Nous avons aussi analysé les phospholipides du phagosome et constaté que la proportion entre chaque classe varie lors de la maturation. De plus, en regardant spécifiquement les différentes espèces de phospholipides nous avons constaté que ce ne sont pas uniquement les espèces majoritaires de la cellule qui dominent la composition de la membrane du phagosome. L’ensemble de nos résultats a permis de mettre en évidence plusieurs fonctions potentielles des radeaux lipidiques, lesquelles sont essentielles à la biogenèse des phagolysosomes (signalisation, fusion membranaire, action microbicide, transport transmembranaire, remodelage de l’actine). De plus, la cinétique d’acquisition des protéines de radeaux lipidiques indique que ceux-ci exerceraient leurs fonctions principalement au niveau des phagosomes ayant atteint un certain niveau de maturation. L’augmentation du nombre de protéines des radeaux membranaires qui s’effectue durant la maturation du phagosome s’accompagne d’une modulation des phospholipides, ce qui laisse penser que les radeaux membranaires se forment graduellement sur le phagosome et que ce ne sont pas seulement les protéines qui sont importées. / Macrophages are specialized cells of the immune system which mediate destruction and killing of invading micro-organisms. They do so by engulfing them by a process called phagocytosis. Microbes are then captured in an intracellular compartment, the phagosome, which gradually acquire molecules able to attack and degrade its cargo. Use of proteomics let us demonstrate the presence of flotillin-1 enriched microdomains (also called lipid rafts or membrane rafts) on the phagosomes. Our team demonstrated the crucial importance of these rafts in the phagocytosis process. Indeed, survival of L. donovani correlates with its presence in a ‘raftless’ phagosome while a mutated L. donovani without LPG is rapidly killed in a phagosome containing lipid rafts. To understand the membrane raft destabilisation mechanism mediated the LPG molecule, we induced phagocytosis of parasites devoid of LPG (LPG-) and compared it to the wild type parasite by microscopy. We first demonstrated that LPG alone is necessary to prevent normal maturation of the phagosome. Additionally, we discovered that the LPG molecule not only inhibits lipid rafts formation on the phagosome but also disorganise pre-existing lipid rafts. This effect of LPG is proportional to the number of repetitive sugar units (Gal( 1,4)-Man 1-PO4) which compose this molecule. Our work demonstrated for the first time an important role of the membrane rafts in the phagosome maturation. Moreover, our conclusions will give new interesting leads for clinical studies on leishmaniosis. The second goal of this work was to characterise them with proteomics and lipidomics tools. To do this, we undertook the systematic identification of proteins present on both subdomains of the phagosome (lipid rafts versus the rest of the phagosomal membrane). To achieve this, we purified phagosomes, from which we isolated lipid rafts by floating Triton X-100 insoluble membranes (DRMs for Detergent Insoluble Membranes). After that, we identified proteins by mass spectrometry.