The carbon monoxide dehydrogenase complex was purified from acetate-grown Methanosarcina thermophila. This complex made up greater than 10% of the cellular protein and the native enzyme formed aggregates with a Mr of approximately 1,000,000. The enzyme contained five subunits of different molecular weight suggesting a multifunctional enzyme complex. Nickel, iron, cobalt, zinc, inorganic sulfide, and a corrinoid were present in the complex. The electron paramagnetic resonance spectrum of CO-reduced enzyme at 113K contained g values of 2.073, 2.049, and 2.028. Isotopic substitution with ⁶¹Ni, ⁵⁷Fe, or ¹³Co resulted in broadening of the spectrum consistent with a Ni-Fe-C spin-coupled complex. Acetyl-CoA caused a perturbation of the signal that was not caused by acetyl-phosphate or mercaptoethanol indicating acetyl-CoA is a physiological substrate. Cell extracts from acetate-grown M. thermophila contained CO-oxidizing:H₂-evolving activity 16-fold greater than extracts of methanol-grown cells. CO-oxidizing:H₂-evolving activity was reconstituted upon combination of: (i) CO dehydrogenase complex, (ii) a ferredoxin, and (iii) purified membranes with associated hydrogenase and b-type cytochrome. The ferredoxin was a direct electron acceptor for the CO dehydrogenase complex. The molecular weight of the isolated protein was 16,400, and the apparent minimum molecular weight was 4,900. The ferredoxin contained 2.8 ± 0.56 Fe atoms and 1.98 ± 0.12 acid-labile sulfide. UV-visible absorption maxima were 395 and 295 nm with a A₃₉₅/A₂₉₅ ratio range of 0.80 to 0.88. The N-terminal amino acid sequence revealed a 4-cysteine cluster, similar to other Fe:S centers that coordinate a Fe:S center. A CH₃-B₁₂:HS-CoM methyltransferase activity was characterized in extracts of acetate- and methanol-grown cells. The activity from extracts of acetate-grown M. thermophila was stable at 70°C for 30 minutes. The activity in cell extracts of acetate- and methanol-grown cells was fractionated with ammonium sulfate treatment and FPLC phenyl superose chromatography. Two peaks of methyltransferase activity were observed in each cell extract sample following phenyl superose fractionation. / Ph. D.

Thesis (M.S.)--University of North Carolina at Greensboro, 2007. / Title from PDF t.p. (viewed Mar. 11, 2008). Directed by : Anne E. Hershey; submitted to the Dept. of Biology. Includes bibliographical references (p. 29-34).

Combined treatment technologies for the removal of waste carbon, nitrogen, and/or sulfur under anoxic/anaerobic conditions have recently received considerable attention. It has been reported that nitrate and/or reduced N-oxides, such as nitrite (NO2-), nitric oxide (NO), and nitrous oxide (N2O), which are products of denitrification, suppress methanogenesis. Research was conducted to investigate the effect of N-oxides and sulfide on mixed, mesophilic (35oC) methanogenic cultures, along with the effect of the type of electron donor on the kinetics and pathway of nitrate reduction. Among all N-oxides tested, NO exerted the most and nitrate exerted the least inhibitory effect on the fermentative/methanogenic consortia. Long-term exposure of a methanogenic culture to nitrate resulted in an increase of N-oxide reduction and a decrease of methane production rates. Sulfide addition to sulfide-free enriched cultures resulted in inhibition of NO2-, NO, and N2O reduction causing accumulation of these intermediates, which in turn inhibited methanogenesis and fermentation. In nitrate-amended, sulfide-acclimated cultures, nitrate reduction occurred via dissimilatory nitrate reduction to ammonia (DNRA); thus, accumulation of N-oxides was avoided and inhibition of methanogenesis was prevented. The nitrate reduction rates in cultures fed with different electron donors followed the descending order: H2/CO2 > acetate > glucose > dextrin/peptone > propionate. Denitrification was observed in the propionate-, acetate-, and H2/CO2-fed cultures regardless of the COD/N value. Both denitrification and DNRA were observed in the dextrin/peptone- and glucose-fed cultures and the predominance of either of the two pathways was a function of the COD/N value. Nitrate reduction processes were incorporated into the IWA Anaerobic Digestion Model No. 1 (ADM1) in order to account for the effect of nitrate reduction processes on fermentation and methanogenesis. The extended ADM1 described the experimental results very well. Model simulations showed that process interactions during nitrate reduction within an overall methanogenic system cannot be explained based on only stoichiometry and kinetics, especially for batch systems and/or continuous-flow systems with periodic, shock nitrate loads. The results of this research are useful in predicting the fate of carbon-, nitrogen-, and sulfur-bearing waste material, as well as in understanding microbial process interactions, in both natural and engineered anoxic/anaerobic systems.

[Truncated abstract] In Australia, there is pressure to reduce the amount of methane produced by ruminant livestock because they are the single largest source of methane emitted from anthropogenic sources, accounting for 70.7% of agricultural methane emissions. In addition, methane production represents a loss of gross energy intake to the animal. The organisms that are responsible for methane production in the animal gut are a distinct group of Archaea called methanogens. Methanogens occupy three different niches within the rumen. Some live freely in the rumen digesta (planktonic), others are attached to the outer surface of the rumen ciliates (ectosymbiotic), and some reside within the ciliates (endosymbiotic). The types and number of methanogens, as well as rumen ciliates and their symbiotic interactions, influence the amount of methane produced from the rumen. These factors in turn are affected by many factors, including diet and ruminal retention time. In this thesis, I tested the general hypothesis that increasing the amount of grain in the diet and reducing the retention time would affect the abundance and diversity of methanogens in their different niches, including their association with ruminal ciliates. Twenty-four fistulated sheep were used in a complete factorial design with the sheep randomly divided into four groups. ... The change in DGGE banding patterns and Shannon indices when sheep were fed grain indicated that the types of methanogens changed when sheep were fed low and high grain diets, but their diversity did not. In contrast, the diversity of rumen ciliates decreased when sheep were fed a high grain diet. A total of 18 bands from the DGGE analysis of the ciliates were sequenced. All except one, which was 98% similar to Cycloposthium sp. not found previously in the rumen, matched the sequences for previously identified rumen ciliates. Some of the rumen ciliates identified were not present in sheep fed the high grain diet. On a high grain diet, methanogens associate endosymbiotically with rumen ciliates to get better access to hydrogen. It appears that the association between methanogens and rumen ciliates is dictated by the availability of hydrogen in the rumen and not the generic composition of the ciliate population. Furthermore, endosymbiotic methanogens appear to produce less methane than methanogens in other niches. The pot scrubbers did not change ruminal retention time but they did reduce the acetate/propionate measurements observed in sheep on the high grain treatment. The reason why pot scrubbers had this effect remains unknown, but it is interesting to consider that some physical interaction has occurred between the pot scrubbers, the grain and the sheep that has improved the fermentation parameters in sheep fed a high grain diet. The results from this study have advanced our understanding of the interaction between methanogens and ruminal ciliates, and methanogenesis in the rumen in response to dietary changes and mechanical challenges. Extending this work to look more specifically at the species of methanogens that are most closely linked to high methane production and how they interact with the ruminal ciliates will be critical for manipulating enteric greenhouse gas emissions.