MEASURING IMPEDANCE OF TISSUES USING A MICROFABRICATED MICROELECTRODE ARRAY By Ashwini Bhat This thesis looks at the possibility of using impedance spectroscopy for differentiating tissue, using a microelectrode array (MEA). The thesis first discusses the background and the motivation for this thesis. It covers the certain basic concepts of the human skin starting from the top epidermis layer all the way to the deep dermis layers of the skin. Then it discusses different types of skin cancer and how they occur, in humans. It also discusses various microfabrication techniques such as oxidation, wet etching, sputtering and photolithography for the creation of a MEA in order to test the tissue. The microfabricated MEA is then used to measure impedance across cooked and raw chicken at different frequencies in order to see if the two types of tissues can be differentiated using their respective impedances. The data shows that the MEA was not able to successfully differentiate the two types of the tissues. It does however list multiple improvements in the fabrication of the MEA and improvements that could be made to the testing procedures which could possible give greater difference in impedance between the two tissues

In translational research, disease models in preclinical studies are used as media for discovery of drugs or novel therapeutics. Development of in vitro models for various neurological diseases that enable efficient pharmacological or toxicological screening has been ongoing but challenging. Recognizing the potential benefit of in vitro disease models, dysfunctions in the cortical neuronal networks were induced to mimic the functional pathology of neurological symptoms using microelectrode arrays. Two different disease states – tinnitusand excitotoxicity – were investigated and discussed. In this model, pentylenetetrazol-induced increase in spontaneous firing rate and synchrony in the auditory cortical networks was used as correlate of tinnitus. Potential tinnitus treatment drugs from several different classes – including the novel class of potassium channel openers – were screened and quantified. The potentialtherapeutic values of these drugs were also discussed as the basis for drug repurposing. Functional excitotoxicity was induced by cisplatin (a cancer drug that causes neurological sideeffects) and glutamate (the major excitatory neurotransmitter). As proof-of-principle that the model may contribute to expediting the development of therapeutics, cisplatin excitotoxicity wasprevented by the antioxidant D-methionine, while glutamate excitotoxicity was prevented by ceftriaxone (a modulator of a glutamate reuptake transporter). In the latter part of the study, with results linking two of the screened drugs L-carnitine and D-methionine to GABAA receptor activation, it was demonstrated that this model not only served as an efficient drug-screening platform, but can be utilized to functionally investigate the underlying mechanism of drugs. Inaddition, several practical or conceptual directions for future studies to improve on this in vitro disease model are suggested.

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Mitochondria provide the main energy required for cardiac excitation-contraction coupling via aerobic oxidative phosphorylation (OXPHOS) process. Accumulation of reactive oxygen species (ROS), by-products of mitochondrial respiration, within dysfunctional mitochondria results in the activation of cardiac cell death pathways and has been associated with heart failure development. Therefore, maintaining mitochondrial homeostasis as a balance between mitochondrial biogenesis and degradation is of great importance toward cardiac proper functioning. In addition to the importance of mitochondrial energy supply, gap junctions, intercellular channels which connect plasma membrane of adjacent cardiomyocytes, by propagating action potential throughout the myocardium maintain cardiac synchronous beating and rhythm. Gap junctions have a rapid turnover and impair of gap junction quality control impacts cell-to-cell communication; resulting in electrical conduction abnormalities and arrhythmogenesis. Therefore, understanding the underlying mechanism the quality control of mitochondria and gap junctions profoundly contributes toward understating the genesis of cardiomyopathy. Furthermore, cardiovascular problems in HIV (Human immunodeficiency virus) positive patients whose viral load is controlled via antiretroviral therapy remains a problem while the underlying mechanism remains elusive. The current study has used an in vitro model of primary neonatal rat ventricular cardiomyocytes (NRVCs) to discover the molecular mechanisms of mitochondrial as well as gap junction quality control under normal and stress conditions. Furthermore, electrical activities of the primary cardiomyocytes were recorded using microelectrode array (MEA) system and important electrophysiological components such as impulse propagation pattern and conduction velocity were extracted from the complex signal recordings. Overall, we have pursued four main aims; Aim 1. Dysregulation of mitochondrial quality control machinery leads to cardiac death; Aim 2. HIV-1 Tat (transcriptional transactivator) dysregulates cardiac homeostasis via mitochondrial pathway; Aim 3. Impairment of protein quality control impacts the quality of gap junction; Aim 4. Inhibition of gap junction quality dysregulates electrical signal propagation within the culture. / Bioengineering

Thanks to pioneering scientists and clinicians, prosthetic devices that are controlled by intra-cortical electrodes recording one's 'thoughts' are a reality today, and no longer merely in the realm of science fiction. However, widespread clinical use of implanted electrodes is hampered by a lack of reliability in chronic recordings, independent of the type of electrodes used. The dominant hypothesis has been that astroglial scar electrically impedes the electrodes. However, recent studies suggest that the impedance changes associated with the astroglial scar are not high enough to interfere significantly impair neural recordings. Furthermore, there is a time delay between when scar electrically stabilizes and when neural recordings fail (typically >1 month lag), suggesting that scar, per se, does not cause chronic recording unreliability. In this study, an alternative hypothesis was tested in a rat model, namely, that chronic inflammation surrounding microelectrodes causes a local neurodegenerative state. Chronic inflammation was varied in three ways: 1) stab wound control, 2) age-matched control, and 3) inter-shank spacing of a multishank electrode. The results of this study suggest that chronic inflammation, as indicated by activated microglia and reactive astrocytes, is correlated with local neurodegeneration, marked by neuron cell death and dendritic loss. Surprisingly, axonal pathology in the form of hyperphosphorylation of the protein Tau (the hallmark of many tauopathies, including Alzheimer's Disease) was also observed in the immediate vicinity of microelectrodes implanted for 16 weeks. Additionally, work is presented on a fast, non-invasive method to monitor the astrocytic response to intra-cortical electrodes using electrical impedance spectroscopy. This work provides a non-invasive monitoring tool for inflammation, albeit an indirect one, and fills a gap which has slowed the development of strategies to control the inflammatory tissue response surrounding microelectrodes and thereby improve the reliability of chronic neural recordings. The results of these experiments have significance for the field of neuroengineering, because a more accurate understanding of why recordings fail is integral to engineering reliable solutions for integrating brain tissue with microelectrode arrays.

This dissertation presents an investigation of micromachined three-dimensional microelectrode arrays (3-D MEAs) targeted toward in-vitro and in-vivo biomedical applications. Current 3-D MEAs are predominantly silicon-based, fabricated in a planar fashion, and are assembled to achieve a true 3-D form: a technique that cannot be extended to micro-manufacturing. The integrated 3-D MEAs developed in this work are polymer-based and thus offer potential for large-scale, high volume manufacturing. Two different techniques are developed for microfabrication of these MEAs - laser micromachining of a conformally deposited polymer on a non-planar surface to create 3-D molds for metal electrodeposition; and metal transfer micromolding, where functional metal layers are transferred from one polymer to another during the process of micromolding thus eliminating the need for complex and non-repeatable 3-D lithography processes. In-vitro and in-vivo 3-D MEAs are microfabricated using these techniques and are packaged utilizing Printed Circuit Boards (PCB) or other low-cost manufacturing techniques. To demonstrate in-vitro applications, growth of 3-D co-cultures of neurons/astrocytes and tissue-slice electrophysiology with brain tissue of rat pups were implemented. To demonstrate in-vivo application, measurements of nerve conduction were implemented. Microelectrode impedance models, noise models and various process models were evaluated. The results confirmed biocompatibility of the polymers involved, acceptable impedance range and noise of the microelectrodes, and potential to improve upon an archaic clinical diagnostic application utilizing these 3-D MEAs.

<p>In this doctoral project, a relatively new form of carbon material, with unique narrow pore size distribution around 7 Å and with uniform structure, has been electrochemically characterised using the single particle microelectrode technique. The carbon has been used as electrode material for supercapacitors. This type of capacitors is used as high power energy buffers in hybrid vehicles and for stationary power backup. The principle for the microelectrode technique consists of connecting a carbon particle with a carbon fibre by means of a micromanipulator. The single particle and carbon fibre together form a microelectrode. Combination of this technique with electroanalytical methods such as cyclic voltammetry and potential step measurements allows for the survey of electrochemical phenomena and for the determination of ion transport parameters inside the nanopores.</p><p>A mathematical model based on Fick’s second law, for diffusion of ions inside the nanopores at non steady state, was used for the determination of effective diffusion coefficients (Deff). The coefficients were calculated from an asymptotic solution of Fick’s equation, applied for a thin layer adjacent to the external surface of the carbon particles and valid for the current response in a short time region. Another asymptotic solution was obtained, using spherical geometry and valid for the current response in a long time region.</p><p>In this doctoral work, the carbon particles have been exposed to potential cycling, which mimics that of large electrodes during operation of a double layer capacitor. The potential-current response, E-I, for the nanoporous carbon, shows a pure capacitive behaviour between –0.5 V and 0.1 V vs. the Hg|HgO reference electrode. The detection of the faradaic processes beyond these potentials was possible by lowering of the voltammometric sweep rate. The electrochemical processes occurring at positive and at negative potential were investigated separately.</p><p>Cyclic voltammometric measurements showed that the chemisorption of hydroxyl groups, occurring between 0.1 and 0.3 V, leads to a mild oxidation of the carbon structure, resulting in surface groups containing an oxygen atom at a specific carbon site (e.g., phenolic or quinine type). These oxygen-containing surface groups caused an increase of the specific capacitance, which remained constant throughout a number of voltammometric cycles. The Deff decreased on the other hand with the number of cycles. The Deff decreases also with the positive potential. The evaluation of Deff indicates adsorption of hydroxyl groups and an increase of the effective tortuosity of the pore system.</p><p>The oxidation of the carbon particles, between 0 and 0.5 V, leads to more extensive oxidation and to surface groups containing two oxygen atoms at a single carbon site, followed by formation of carbonate ions. The oxygen-containing surface groups and carbonate ions formed at these potentials do not contribute to the specific capacitance and drastically retard or obstruct the ion transport inside the nanopores.</p><p>At negative potentials the carbon particles show a dominantly capacitive behaviour. The faradaic processes taking place below –0.5 V vs. Hg|HgO reference electrode are generation and adsorption of hydrogen. These processes do not perturb significantly the electrochemical and ion transport properties of the nanoporous carbon particles. It was found that hydrogen generation occurs at –0.5 V vs. Hg|HgO and that two hydrogen oxidation processes take place at positive potentials. The results indicate that the weakly adsorbed hydrogen undergoes oxidation between 0 and 0.1 V and that the strongly adsorbed hydrogen is oxidised at more positive potentials.</p><p>The single particle technique was adapted for the determination of diffusion coefficients of an organic electrolyte. The different size of the anions and cations caused different transport characteristics at negative and positive potentials. Slow cycling was found important for ion penetration inside the nanopores and for the evaluation of the effective diffusion coefficients.</p><p>The effective diffusion coefficients for the nanoporous carbon using aqueous 6M KOH and 0.1M TEABF4 in acetonitrile were estimated to 1.4 (±0.8).10-9 cm2 s-1 and 1.3 (±0.4) 10-8 cm2 s-1, respectively.</p>