Being the longest-lived rodent, naked mole-rats (NMR; Heterocephalus glaber) are an exceptional model for biogerontological research. However, unlike other rodents, not much is known about their wound healing process. To investigate that, full-thickness wounds were created in the back skin of naked mole rats. Our initial data confirmed that wound closure in NMR skin was achieved primarily by reepithelialization and granulation tissue formation, with only ~26% wound contraction, making them an excellent model to study human cutaneous wound healing. Similar to mice and human skin, changes in wound epithelial tongue included progressive enlargement of wound epithelium, increased proliferation and changes in the expression pattern of epidermal markers including K14, K17, integrin α6 and E-cadherin. Further analysis revealed characteristics of reduced scarring in NMR wounds including low collagen I to III ratio, increased HA expression (HMW) and increased fibronectin expression. Transcriptional profiling of TGFβ isoforms and different pro/anti-inflammatory cytokines revealed a balance in the expression and repression of different cytokines, potentially contributing into reduced scarring. Comparison of RNA-seq data from NMR and human fullthickness wounds revealed a delay in the activation of important biological processes and pathways in NMR skin in response to injury. Further analysis based on cultured human and NMR cells revealed differential regulation of TGFβ signalling pathway between both species. 3-D collagen gel contraction assay revealed that NMR fibroblast showed noticeable contraction but independently of TGFβ treatment, while human fibroblast showed marked increased in gel contraction in the presence of TGFβ. In conclusion, NMR can serve as a very useful model to study human cutaneous wound healing. The reduced scarring in NMR could be a result of multiple factors including HMW-HA, balanced cytokine expression and differential regulation of different TGFβ cytokines as observed in the in vitro studies. / The full text will be available at the end of the embargo: 3rd May 2024

Thesis (PhD (Botany and Zoology))--University of Stellenbosch, 2008. / The Bathyergidae are subterranean rodents endemic to Africa south of the Sahara. They are characterised by divergent diploid numbers that range from 2n=40 in Fukomys mechowi to 2n=78 in F. damarensis. In spite of this variation there is limited understanding of the events that shaped the extant karyotypes and in an attempt to address this, and to shed light on the mode and tempo of chromosomal evolution in the African mole-rats, a detailed analysis of both the autosomal and sex chromosome components of the genome was undertaken. In addition to G- and Cbanding, Heterocephalus glaber (2n=60) flow-sorted painting probes were used to conduct cross-species chromosome painting among bathyergids. This allowed the detection of a balanced sex chromosome-autosome translocation in F. mechowi that involved a complex series of rearrangements requiring fractionation of four H. glaber autosomes and the subsequent translocation of segments to sex chromosomes and to the autosomal partners. The fixation of this rare rearrangement has probably been favoured by the presence of an intercalary heterochromatic block (IHB) that was detected at the boundary with the translocated autosomal segment. Male meiosis in Cryptomys, the Fukomys sister clade, was investigated by immunostaining of the SCP1 and SCP3 proteins involved in the formation of the synaptonemal complex. This allowed confirmation of a Y-autosome translocation that is shared by C. hottentotus subspecies. We discuss reduced recombination between Y and X2 that seems to be heterochromatin dependent in the C hottentotus lineage, and the implications this holds for the evolution of a meiotic sex chromosome chain such as has been observed in platypus. By extending cross-species chromosome painting to Bathyergus janetta, F. damarensis, F. darlingi and Heliophobius argenteocinereus, homologous chromosomal regions across a total of 11 species/subspecies and an outgroup were examined using cladistic and bioinformatics approaches. The results show that Bathyergus, Georychus and Cryptomys are karyotypically highly conserved in comparison to Heterocephalus, Heliophobius and Fukomys. Fukomys in particular is characterised by a large number of rearrangements that contrast sharply with the conservative Cryptomys. The occurrence and fixation of rearrangements in these species has probably been facilitated by vicariance in combination with life history traits that are particular to these mammals.

Eight rodent species with fossorial activity differing in a number of characteristics such as ecology, climatic conditions, geographical distribution, or kinship were studied using infrared thermography in order to describe their surface temperature and its patterns. An attempt to describe the relation between surface temperature and varied social organisation in burrowing rodents was made.

The oxygen consumption and body temperature were measured in adults and pups of a social Mashona mole-rat(Fukomys darlingi)to test poikilothermic traits in this species and effect of presence of adults on pup´s thermoregulation abilities. The adult´s resting metabolic rate was 0.76 {$\pm$} 0.20 mlO2g-1hod-1 in the thermoneutral zone 27-34°C. We did not confirm poikilotermic traits in this species, because body temperature was stable (33.0 {$\pm$} 0.5°C) at low ambient temperatures. The pups started to thermoregulate in age of one month and they are able to maintain stable body temperature very late in age of three months. My results indicate that presence of adults is necessary for thermoregulation of pups.

The oxygen consumption and body temperature were measured in adults and pups of a social Mashona mole-rat(Fukomys darlingi)to test poikilothermic traits in this species and effect of presence of adults on pup´s thermoregulation abilities. The adult´s resting metabolic rate was 0.76 {$\pm$} 0.20 mlO2g-1hod-1 in the thermoneutral zone 27-34°C. We did not confirm poikilotermic traits in this species, because body temperature was stable (33.0 {$\pm$} 0.5°C) at low ambient temperatures. The pups started to thermoregulate in age of one month and they are able to maintain stable body temperature very late in age of three months. My results indicate that presence of adults is necessary for thermoregulation of pups.

Microsatellites are repetitive DNA characterized by tandem repeats of short motifs (2 – 5 bp). High mutation rates make them ideal for population level studies. Microsatellite allele genesis is generally attributed to strand slippage, and it is assumed that alleles are caused only by changes in repeat number. Most analyses are limited to alleles (electromorphs) scored by mobility only, and models of evolution rarely account for homoplasy in allele length. Additionally, insertion/deletion events (indels) in the flanking region or interruptions in the repeat can obfuscate the accuracy of genotyping. Many investigators use microsatellites, designed for a focal species, to screen for genetic variation in non-focal species. Comparative studies have shown different mutation rates of microsatellites in different species, and even individuals. Recent studies have used reciprocal comparisons to assess the level of polymorphism of microsatellites between pairs of taxa. In this study, I investigated the evolution of microsatellites within a phylogenetic context, using comparisons within the rodent family Bathyergidae. Bathyergidae represents a monophyletic group endemic to sub-Saharan Africa and relationships are well supported by morphological and molecular data. Using mitochondrial and nuclear DNA, a robust phylogeny was generated for the Bathyergidae. From my results, I proposed the new genus, Coetomys. I designed species-specific genotyping and microsatellite flanking sequence (MFS) primers for each genus. Sequencing of the MFS provided direct evidence of the evolutionary dynamics of the repeat motifs and their flanking sequence, including rampant electromorphic homoplasy, null alleles, and indels. This adds to the growing body of evidence regarding problems with genotype scores from fragment analysis. A number of the loci isolated were linked with repetitive elements (LTRs and SINEs), characterized as robust phylogenetic characters. Results suggest that cryptic variation in microsatellite loci are not trivial and should be assessed in all studies. The phylogenetic utility of the nucleotide variation of the MFS was compared to the well-resolved relationships of this family based on the 12S/TTR phylogeny. Variation observed in MFS generated robust phylogenies, congruent with results from 12S/TTR. Finally, a number of the indels within the MFS provided a suite of suitable phylogenetic characters.