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The most frequent soils in the São Paulo State Coastal Plain are Podzols, characterized by strong to moderate hydromorphic to well-drained podzolization with very well developed podzol-B horizons (Bh or Bhm). Podzolization processes include the effects of hydrology and rooting on profile morphology and the subsequent effects of improved drainage. A Podzol chrono-hydrosequence was described in detail on a cliff at the south coast of Ilha Comprida, a Holocene barrier island, and allowed a subdivision into four distinct groups: poorly-drained profiles, profiles with well-drained B horizons, strongly rooted profiles and superposed profiles. The morphological description and some observations about the exposure cliff were essential for grouping and differentiating the podzol profiles. Some well-drained podzols have OM-depleted mottles that are related to selective decomposition of organic matter (OM) by microorganisms. Such mottles are frequently associated to root channels. Seventeen profiles were studied, thirteen had depletion mottles scattered along the profile. Most of these mottles are whitish and are located preferentially in the horizons of transition between the E and B horizons, particularly in conditions of good drainage. Such mottles have certain morphological differences and may be grouped according to similarities in their morphology and their position in the profile. Distinct groups are: (a) concentric OM-depleted mottles; (b) circular/tubular OM-depleted mottles (burrows); (c) dotted OM-depleted mottles; (d) ghost OM-depleted mottles; (e) irregular OM-depleted mottles and (f) Fe-depleted mottles. The chemical composition of soil organic matter was studied in detail using pyrolysis in combination with gas chromatography/mass spectrometry (Py-GC/MS). Samples of all horizons of the distinct profiles studied were taken, as well as from the center of the mottle (M) and from the direct surroundings (S). The processes involved in the genesis of Podzols in the sandy coastal plain are directly related to drainage, the contribution of dissolved organic matter (DOM), the contribution of organic matter derived from roots, the chemical composition of organic matter and its decomposition by microorganisms, causing a large variation in adjacent Podzols. The well-drained Podzols differ in characteristics from the poorly drained ones in composition and deposition of OM, as well as its decomposition, which is directly related to the activity of groups of microorganisms. They also differ in the relative contribution of OM-derived from roots and DOM. There is a wide variation in the characteristics of decomposition by microorganisms between the profiles of Podzols permanently exposed to air and marine spray (the cliffs) on Ilha Comprida and those inland (pits). There are therefore two main processes that change the morphology of Podzols (OM and composition): (a) change in drainage and rooting, and (b) exposure to air. / Os solos mais frequentes na Planície Costeira do Estado de São Paulo são os podzóis, caracterizados por podzolização com hidromorfismo forte a moderado a bem drenado com horizontes B-podzol muito bem desenvolvidos (Bh ou Bhm). O processo de podzolização inclui os efeitos da hidrologia e do enraizamento no perfil e os efeitos subsequentes da drenagem melhorada. Uma crono-hidrosequencia de podzóis foi descrita em detalhes em um barranco na costa sul da Ilha Comprida, uma ilha barreira do Holoceno, e permitiu uma subdivisão em quatro grupos distintos: perfis mal drenados, perfis com horizonte B bem drenados, perfis fortemente enraizados e perfis superpostos. A descrição morfológica e algumas observações sobre o barranco exposto foram essenciais para o agrupamento e diferenciar os perfis de podzóis. Alguns desses podzóis bem drenados possuem manchas esbranquiçadas que estão relacionadas com a seletiva decomposição da matéria orgânica (MO) por microorganismos. Tais manchas são freqüentemente associadas aos canais radiculares. Foram estudados dezessete perfis, dos quais treze apresentaram manchas de esgotamento espalhadas ao longo do perfil. A maioria destas manchas são esbranquiçadas e estão localizadas preferencialmente nos horizontes de transição entre os horizontes E e B, particularmente em condições de boa drenagem. Tais manchas possuem algumas diferenças morfológicas e puderam ser agrupadas de acordo com semelhanças na sua morfologia e da sua posição no perfil. Os grupos são: (a) manchas concêntricas de depleção da MO; (b) manchas circulares/tubularess de depleção da MO (tocas); (c) manchas pontilhadas de depleção da MO; (d) manchas fantasmas de depleção da MO; (e) manchas irregulares de depleção da MO; e (f) manchas de depleção de Fe. A composição química da matéria orgânica do solo foi estudada em detalhe por pirólise em combinação com cromatografia em fase gasosa/espectrometria de massa (Py-CG/EM). Amostras de todos os horizontes dos perfis estudados foram coletadas, bem como amostras do centro das manchas (M) e do solo adjacente (S). Os processos envolvidos na gênese de podzóis da planície costeira arenosa estão diretamente relacionados com a drenagem, a contribuição de matéria orgânica dissolvida (MOD), a contribuição de matéria orgânica derivada de raízes, a composição química da matéria orgânica e sua decomposição por microorganismos, causando uma grande variação no podzóis. Os podzóis bem drenados diferem em características dos mal drenados em composição e deposição de MO, bem como a sua decomposição, que está directamente relacionada com a actividade dos grupos de microrganismos. Eles também diferem na contribuição relativa da MO derivada de raízes e MOD. Existe uma grande variação nas características da decomposição por microorganismos entre os perfis de podzóis permanentemente expostas ao ar e spray marinho (falésias) na Ilha Comprida e os do interior (trincheiras). Há, portanto, dois processos principais que alteram a morfologia de podzóis (composição da MO): (a) mudança na drenagem e enraizamento, e (b) a exposição ao ar.

The most frequent soils in the São Paulo State Coastal Plain are Podzols, characterized by strong to moderate hydromorphic to well-drained podzolization with very well developed podzol-B horizons (Bh or Bhm). Podzolization processes include the effects of hydrology and rooting on profile morphology and the subsequent effects of improved drainage. A Podzol chrono-hydrosequence was described in detail on a cliff at the south coast of Ilha Comprida, a Holocene barrier island, and allowed a subdivision into four distinct groups: poorly-drained profiles, profiles with well-drained B horizons, strongly rooted profiles and superposed profiles. The morphological description and some observations about the exposure cliff were essential for grouping and differentiating the podzol profiles. Some well-drained podzols have OM-depleted mottles that are related to selective decomposition of organic matter (OM) by microorganisms. Such mottles are frequently associated to root channels. Seventeen profiles were studied, thirteen had depletion mottles scattered along the profile. Most of these mottles are whitish and are located preferentially in the horizons of transition between the E and B horizons, particularly in conditions of good drainage. Such mottles have certain morphological differences and may be grouped according to similarities in their morphology and their position in the profile. Distinct groups are: (a) concentric OM-depleted mottles; (b) circular/tubular OM-depleted mottles (burrows); (c) dotted OM-depleted mottles; (d) ghost OM-depleted mottles; (e) irregular OM-depleted mottles and (f) Fe-depleted mottles. The chemical composition of soil organic matter was studied in detail using pyrolysis in combination with gas chromatography/mass spectrometry (Py-GC/MS). Samples of all horizons of the distinct profiles studied were taken, as well as from the center of the mottle (M) and from the direct surroundings (S). The processes involved in the genesis of Podzols in the sandy coastal plain are directly related to drainage, the contribution of dissolved organic matter (DOM), the contribution of organic matter derived from roots, the chemical composition of organic matter and its decomposition by microorganisms, causing a large variation in adjacent Podzols. The well-drained Podzols differ in characteristics from the poorly drained ones in composition and deposition of OM, as well as its decomposition, which is directly related to the activity of groups of microorganisms. They also differ in the relative contribution of OM-derived from roots and DOM. There is a wide variation in the characteristics of decomposition by microorganisms between the profiles of Podzols permanently exposed to air and marine spray (the cliffs) on Ilha Comprida and those inland (pits). There are therefore two main processes that change the morphology of Podzols (OM and composition): (a) change in drainage and rooting, and (b) exposure to air. / Os solos mais frequentes na Planície Costeira do Estado de São Paulo são os podzóis, caracterizados por podzolização com hidromorfismo forte a moderado a bem drenado com horizontes B-podzol muito bem desenvolvidos (Bh ou Bhm). O processo de podzolização inclui os efeitos da hidrologia e do enraizamento no perfil e os efeitos subsequentes da drenagem melhorada. Uma crono-hidrosequencia de podzóis foi descrita em detalhes em um barranco na costa sul da Ilha Comprida, uma ilha barreira do Holoceno, e permitiu uma subdivisão em quatro grupos distintos: perfis mal drenados, perfis com horizonte B bem drenados, perfis fortemente enraizados e perfis superpostos. A descrição morfológica e algumas observações sobre o barranco exposto foram essenciais para o agrupamento e diferenciar os perfis de podzóis. Alguns desses podzóis bem drenados possuem manchas esbranquiçadas que estão relacionadas com a seletiva decomposição da matéria orgânica (MO) por microorganismos. Tais manchas são freqüentemente associadas aos canais radiculares. Foram estudados dezessete perfis, dos quais treze apresentaram manchas de esgotamento espalhadas ao longo do perfil. A maioria destas manchas são esbranquiçadas e estão localizadas preferencialmente nos horizontes de transição entre os horizontes E e B, particularmente em condições de boa drenagem. Tais manchas possuem algumas diferenças morfológicas e puderam ser agrupadas de acordo com semelhanças na sua morfologia e da sua posição no perfil. Os grupos são: (a) manchas concêntricas de depleção da MO; (b) manchas circulares/tubularess de depleção da MO (tocas); (c) manchas pontilhadas de depleção da MO; (d) manchas fantasmas de depleção da MO; (e) manchas irregulares de depleção da MO; e (f) manchas de depleção de Fe. A composição química da matéria orgânica do solo foi estudada em detalhe por pirólise em combinação com cromatografia em fase gasosa/espectrometria de massa (Py-CG/EM). Amostras de todos os horizontes dos perfis estudados foram coletadas, bem como amostras do centro das manchas (M) e do solo adjacente (S). Os processos envolvidos na gênese de podzóis da planície costeira arenosa estão diretamente relacionados com a drenagem, a contribuição de matéria orgânica dissolvida (MOD), a contribuição de matéria orgânica derivada de raízes, a composição química da matéria orgânica e sua decomposição por microorganismos, causando uma grande variação no podzóis. Os podzóis bem drenados diferem em características dos mal drenados em composição e deposição de MO, bem como a sua decomposição, que está directamente relacionada com a actividade dos grupos de microrganismos. Eles também diferem na contribuição relativa da MO derivada de raízes e MOD. Existe uma grande variação nas características da decomposição por microorganismos entre os perfis de podzóis permanentemente expostas ao ar e spray marinho (falésias) na Ilha Comprida e os do interior (trincheiras). Há, portanto, dois processos principais que alteram a morfologia de podzóis (composição da MO): (a) mudança na drenagem e enraizamento, e (b) a exposição ao ar.

The importance of weak interactions between molecules to life and all parts of science and engineering is unquestionable and there have been an enormous interest in such interactions. Among all the weak interactions, hydrogen bonding is the most popular and it has enjoyed the most attention of the scientific community. Halogen bonding is gaining more popularity in the recent time, as its importance to biological molecules and crystal engineering has been recognized. In this work, a Pulsed Nozzle Fourier Transform Microwave spectrometer has been used to study the rotational spectra of molecules and hydrogen bonded complexes. Structural information is obtained from the rotational spectra. Ab initio electronic structure, Natural Bond Orbital (NBO) and Atoms in Molecules (AIM) theoretical methods have been used to characterize the weak intermolecular interactions, including hydrogen bonding, halogen bonding and lithium bonding. In Chapter I, introduction to weak interaction is discussed. A brief introduction of different experimental and theoretical methods is presented. Chapter II discusses in detail about the different methods used to investigate weak interaction, both experimentally and theoretically, in this work. In our lab, we use Pulsed Nozzle Fourier Transform Microwave spectrometer to determine the complexes spectra and structures. We generate MW radiation with the help of electronic devices and use Balle-Flygare cavity where molecular interaction takes place. We inject the sample inside the cavity in form of supersonic molecular beam through a pulsed nozzle, parallel to MW radiation. The detailed instrumental discussion about MW spectrometer has been done in this Chapter. We extensively use theoretical methods to probe weak bonding and characterize them. Ab initio and DFT calculations are used to optimize the structure of the complexes and predict their rotational spectra. Atoms in Molecules theory and Natural Bond Orbital theory are then used with the ab initio wave functions to understand the weak interactions in depth. Discussion about these methods and software used for the analysis will also be discussed. In Chapter III, rotational spectrum of Hexafluoroisopropanol (HFIP) monomer is presented. HFIP is an interesting molecule as it offers many possibilities as hydrogen bond donor and acceptor. It has the OH group which can both accept/donate a hydrogen bond and in addition it has a very acidic CH group. It is the only solvent that can dissolve polyethylene terephthalate, a normally difficult-to-dissolve polymer, and clearly it has unique interactions with this difficult to solve polymer. We have recorded and fitted rotational spectra of five different isotopologues of HFIP which helped us in determining its accurate structure. Though, it can exist in synclinical and antiperiplanar conformers, only the later has been detected in our molecular beam spectrometer. This happens to be the global minimum structure of HFIP. Combination of experimental observations and ab initio calculations provided many evidences which confirmed the presence of antiperiplanar conformer, experimentally. Since, the rotational constants for both conformers were very close, it was always challenging to pick up one conformer as experimentally observed structure. A prototype molecule, hexafluoroisobutene (HFIB) shows doubling of rotational transitions due to tunnelling/counter rotation of the two CF3 groups through a small barrier. Interestingly, such motion has no barrier in HFIP and hence no splitting in transitions was observed. Potential energy surface calculated for counter-rotation of the two CF3 groups is consistent with this observation. This barrier is different from eclipsed-staggered exchange barrier, observed by 60 counter rotation of both terminal CF3 groups, for which the barrier height is very large and tunnelling cannot occur. The origin/lack of the small barrier in HFIB/HFIP has been explored using Natural Bond Orbital (NBO) method which helped in understanding intramolecular bonding in these molecules. Along with HFIB, other prototype molecules were also considered for the analysis e.g. hexafluoroacetone, hexafluoroacetone imine, hexafluoroisobutane, hexafluoroisopropylamine. In the last section of this Chapter, we have discussed the generalized behaviour of molecules which have CF3-C-CF3 groups. In Chapter IV, rotational spectrum of HFIP•••H2O complex is presented. Aqueous solution of HFIP stabilizes α-helical structure of protein, a unique property of this solvent. The main objective of this Chapter is understanding the interaction between HFIP and H2O. Microwave spectrum of HFIP•••H2O was predicted and recorded. Three isotopologues were investigated. Though, this complex could in principle have several structural conformers, detailed ab initio calculations predicted two conformers and only one was observed. Though, the rotational constants for both structures were somewhat similar, lack of a dipole transitions, larger intensity of b-dipole transitions over c-dipole transitions and isotopic substitution analysis positively confirm the structure in which HFIP acts as the hydrogen bond donor. The linear O-H•••O hydrogen bond in HFIP-H2O complex is significantly stronger than that in water dimer with the H•••O distance of 1.8 Å. The other structure for this complex, not found in experiment is cyclic with both C-H•••O and O-H•••O hydrogen bonds, both of which are bent with H•••O distances in the range 2.2-2.3 Å. Both AIM and NBO calculations have been used to characterize the hydrogen bond in this complex. In Chapter V, a comprehensive study on hydrogen bonding, chlorine bonding and lithium bonding have been done. A typical hydrogen bonded complex can be represented as A•••H-D, where A is the acceptor unit and H-D is the hydrogen bond donor unit. Many examples are known in literature, both experimentally and theoretically, in which the A-H-D bond angles are not linear. Deviation from linearity also results in the increase in A•••H bond lengths, as noted above for the two structures of HFIP•••H2O complex. Though this has been known for long, the distance between A and D being less than the sum of their van der Waals ‘radii’ is still used as a criterion for hydrogen bonding by many. Our group has recently shown the inappropriateness of van der Waals ‘radii’ and defined hydrogen bond ‘radii’ for various donors, DH and A. A strong correlation of DH hydrogen bond ‘radii’ with the dipole moment was noted. In this Chapter, we explored in detail the angular dependence of hydrogen bond ‘radii’. Electron density topology around DH (D = F, Cl and OH) has been analyzed in detail and shown to be elliptical. For these molecules, the two constants for H atom treated as an ellipse have been determined. It is hoped that these two constants will be used widely in analyzing and interpreting H•••A distances, as a function of D-H•••A angles, rather than one ‘radius’ for H and acceptor atoms. In Chapter VI, Detailed analysis and comparisons among hydrogen bond, chlorine bond and lithium bond, have been done. Hydrogen can be placed in group 1 as well as group 17 of the periodic table. Naturally, lithium bonding and halogen bonding have been proposed and investigated. There have been numerous investigations on the nature of hydrogen bonding and the physical forces contributing to it. In this Chapter, a total of one hundred complexes having H/Cl/Li bonding have been investigated using ab initio, AIM and NBO theoretical methods. Various criteria proposed in the literature have been examined. A new criterion has been proposed for the characterization of closed shell (ionic/electrostatic) and open shell (covalent) interactions. It has been well known that the D-H bond weakens on the D-H•••A hydrogen bond formation and H•••A bond acquires a fractional covalency. This Chapter shows that for D-Li•••A complexes, the ionicity in D-Li is reduced as the Li•••A bond is formed This comprehensive investigation of H/Cl/Li bonding has led us to propose a conservation of bond order, considering both ionic and covalent contributions to both D-X and X•••A bonds, where DX is the X-bond donor and A is the acceptor with X = H/Cl/Li. Hydrogen bond is well understood and its definition has been recently revised [Arunan et al. Pure Appl. Chem., Vol. 83, pp. 1619–1636, 2011]. It states “The X–H•••Y hydrogen bond angle tends toward 180° and should preferably be above 110°”. Using AIM theory and other methods, this fact is examined and presented in Appendix A. In second part of appendix A, a discussion about calling H3¯ complex as trihydrogen bond and its comparison with FHF¯ complex, is presented. In Appendix B, there is tentative prediction and discussion about the HFIP dimer. Condense phase studies show that HFIP have strong aggregation power to form dimer, trimer etc. During, HFIP monomer study, we have unassigned lines which are suspected to be from HFIP dimer. These are tabulated in the Appendix B as well.

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