Le but de ce travail a été de mieux comprendre les défenses mises en œuvre par l’hôte infecté par le champignon opportuniste humain Aspergillus fumigatus (Af). 1) Un modèle d’infection a été redéveloppé chez l’organisme modèle Drosophila melanogaster. Seules les mouches mutantes pour le gène MyD88 de la voie immunitaire Toll succombent à l’injection d’une poignée de conidies, sans toutefois qu’Af dissémine dans l’hôte. Ce travail a révélé que ce n’est pas la réponse immunitaire qui joue un rôle prépondérant dans la défense de l’hôte, mais sa capacité de résilience à l’exposition à des mycotoxines sécrétées par Af. 2) Un crible génétique d’envergure a été établi pour identifier des lignées transgéniques mutantes ARNi sensibles à l’infection par Af. 6.471 lignées ont été criblées et 241 gènes-candidats identifiés, dont peu fonctionnent dans la réponse immunitaire. Ainsi, ce travail a contribué à identifier de nombreux gènes impliqués dans la résilience de l’hôte à Af et ses mycotoxines. / The overarching goal of this work is to better understand host defenses against the human opportunistic fungus Aspergillus fumigatus (Af). 1) An infection model has been reestablished in the genetic model organism Drosophila melanogaster. Only flies mutant for the immune response Toll pathway gene MyD88 succumb to the injection of a handful of conidia even though Af is unable to disseminate throughout its host. This work revealed that it is not the immune response that plays a cardinal role in host defense but its resilience capacity to the exposure to some mycotoxins secreted by Af. 2) A large-scale genetic screen has been implemented to identify transgenic RNAi mutant lines susceptible to Af infection in survival experiments. 6,471 lines have been screened and 241 candidate genes identified, few of which are known to act in the immune response. Thus, this work has contributed to identifying numerous genes involved in host resilience to Af and to some of its mycotoxins.

Text in English / Fungal species and their mycotoxins are the most predorminant contaminants of dried agricultural products in sub-Saharan Africa (SSA) and the main species of fungi that can synthesize mycotoxins are Aspergillus, Fusarium and Penicillium. In Africa, aflatoxin is labelled as a great threat to human and animal health due to its high contamination levels reported of aflatoxins in foods. The aim of this study was to survey fungi and aflatoxin contamination of small-scale processed foodstuffs sold at informal retail outlets in the Johannesburg metropolis, South Africa. A total of 270 food samples (10 starch and legume based foods, 11 meat and fish based foods, 22 spices and local condiments, 14 dried fruits and vegetables) were collected from retailers; and analysed four (4) times in different seasons of spring, summer, autumn and winter. Out of the 270 samples analysed, only 27.8% were contaminated with fungal. Of all the six categories of foods analysed, roots and tubers (60.0%), nuts and seeds (40.0%), dried vegetables (37.1%), and the Meat and Insect foods (33.3%) respectively, had the most contaminated samples with fungal respectively. The least contaminated food groups were the fish foods (10.0%) and spices and local condiments (16.7%) respectively. Twenty percent of the 270 dried food analysed were contaminated by Aspergillus species out of which 61.1% of the contaminated samples had fungal counts above 103 cfu/g. Aspergillus niger was the most predominant Aspergillus species identified in all the categories of food samples analysed. Fruits and vegetables (24.4%) and the nuts and seeds (20.0%) food groups had the highest number of samples contaminated with aflatoxin. Peanut flour and Cardamom had the most incidence of aflatoxin. AFB1, AFB2 & AFG1 were the most prominent aflatoxin types recovered from the food samples. Almost all the food samples in which aflatoxin were identified had aflatoxin values above 10μg/ml. / Life and Consumer Sciences / M.Sc. (Life Science)

This study assessed the mycological and aflatoxin contamination of peanuts collected from Kinshasa, DRC and Pretoria, South Africa. Forty peanut samples were collected randomly at informal markets in the two cities and analysed for mycoflora and aflatoxins (B1, B2, G1 and G2) using standard methods. The results indicated that 95% and 100% of peanut samples collected from Kinshasa and Pretoria, respectively were contaminated with aflatoxigenic fungi with Kinshasa’s samples being the most contaminated (up to 49, 000 CFU/g). Seventy percent (70 %) of Kinshasa-samples and 35% of Pretoria-samples exceeded the maximum allowable limit of aflatoxin B1 set by JECFA (5 ppb). Statistical evidence showed a significant positive correlation between mycoflora and aflatoxin level for Kinshasa-samples (r = 0.4743, p < 0.005) while Pretoria-samples showed no correlation. The study reveals that high level of contamination in Kinshasa-samples could be due to the tropical nature of the climate and poor storage conditions as compared to Pretoria which is sub-tropical and sanitary regulations are enforced. / Life & Consumer Sciences / M. Sc. (Life Sciences)

Mycotoxins are toxic secondary metabolites produced by filamentous fungi. Aflatoxins and fumonisins are among the most toxic mycotoxins. They are a significant risk factor for a cocktail of chronic health conditions including cancer of the liver, oesophagus and kidney, teratogenicity, neural tube defects, interference with lipid metabolism, a weakened immune system and a negative impact on micronutrient absorption in both man and animals. This study compared natural contamination of peanuts, peanut butter and sorghum from Gaborone, Botswana and Bulawayo, Zimbabwe with aflatoxins and fumonisins. In total 34 peanut samples, 34 sorghum samples and 11 peanut butter samples were collected randomly from retail shops and informal markets in the two cities. Fungal contamination was determined using standard mycology methods. Aflatoxin and fumonisin contamination was determined using HPLC-FLD. A. flavus/parasiticus species were detected in 66% and 100% of randomly analysed peanut samples from Bulawayo and Gaborone respectively and 27% (3/11) of peanut butter samples from Bulawayo. 67% of randomly analysed sorghum samples from Bulawayo showed A. flavus/parasiticus and Fusarium species contamination while none of the randomly analysed sorghum samples from Gaborone showed any fungal contamination. Furthermore aflatoxins were not detected in any of the sorghum samples; however 61% (11/18) of the Bulawayo sorghum samples showed fumonisin contamination (Range: 8 – 187 ng/g). Three of the peanut samples from Bulawayo were contaminated with aflatoxins (range: 6.6 – 622 ng/g) and no aflatoxins were detected in Gaborone peanuts. All 11 peanut butter samples from Bulawayo were contaminated with aflatoxins (Mean: 73.5 ng/g, Range: 6.8-250 ng/g) and AFB1 was the most prevalent. These preliminary results indicate that peanut butter and peanuts from Bulawayo are contaminated with high levels of aflatoxins. Stricter policing of regulations should be implemented to ensure compliance by manufacturers and public health interventions implemented in vulnerable communities. / Life & Consumer Sciences / M. Sc. (Life Sciences)

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This study assessed the mycological and aflatoxin contamination of peanuts collected from Kinshasa, DRC and Pretoria, South Africa. Forty peanut samples were collected randomly at informal markets in the two cities and analysed for mycoflora and aflatoxins (B1, B2, G1 and G2) using standard methods. The results indicated that 95% and 100% of peanut samples collected from Kinshasa and Pretoria, respectively were contaminated with aflatoxigenic fungi with Kinshasa’s samples being the most contaminated (up to 49, 000 CFU/g). Seventy percent (70 %) of Kinshasa-samples and 35% of Pretoria-samples exceeded the maximum allowable limit of aflatoxin B1 set by JECFA (5 ppb). Statistical evidence showed a significant positive correlation between mycoflora and aflatoxin level for Kinshasa-samples (r = 0.4743, p < 0.005) while Pretoria-samples showed no correlation. The study reveals that high level of contamination in Kinshasa-samples could be due to the tropical nature of the climate and poor storage conditions as compared to Pretoria which is sub-tropical and sanitary regulations are enforced. / Life and Consumer Sciences / M. Sc. (Life Sciences)

Mycotoxins are toxic secondary metabolites produced by filamentous fungi. Aflatoxins and fumonisins are among the most toxic mycotoxins. They are a significant risk factor for a cocktail of chronic health conditions including cancer of the liver, oesophagus and kidney, teratogenicity, neural tube defects, interference with lipid metabolism, a weakened immune system and a negative impact on micronutrient absorption in both man and animals. This study compared natural contamination of peanuts, peanut butter and sorghum from Gaborone, Botswana and Bulawayo, Zimbabwe with aflatoxins and fumonisins. In total 34 peanut samples, 34 sorghum samples and 11 peanut butter samples were collected randomly from retail shops and informal markets in the two cities. Fungal contamination was determined using standard mycology methods. Aflatoxin and fumonisin contamination was determined using HPLC-FLD. A. flavus/parasiticus species were detected in 66% and 100% of randomly analysed peanut samples from Bulawayo and Gaborone respectively and 27% (3/11) of peanut butter samples from Bulawayo. 67% of randomly analysed sorghum samples from Bulawayo showed A. flavus/parasiticus and Fusarium species contamination while none of the randomly analysed sorghum samples from Gaborone showed any fungal contamination. Furthermore aflatoxins were not detected in any of the sorghum samples; however 61% (11/18) of the Bulawayo sorghum samples showed fumonisin contamination (Range: 8 – 187 ng/g). Three of the peanut samples from Bulawayo were contaminated with aflatoxins (range: 6.6 – 622 ng/g) and no aflatoxins were detected in Gaborone peanuts. All 11 peanut butter samples from Bulawayo were contaminated with aflatoxins (Mean: 73.5 ng/g, Range: 6.8-250 ng/g) and AFB1 was the most prevalent. These preliminary results indicate that peanut butter and peanuts from Bulawayo are contaminated with high levels of aflatoxins. Stricter policing of regulations should be implemented to ensure compliance by manufacturers and public health interventions implemented in vulnerable communities. / Life and Consumer Sciences / M. Sc. (Life Sciences)

Maize is the principal staple food/feed crop exposed to mycotoxins, and the co-occurrence of multiple mycotoxins and their metabolites has been well documented. Dietary (co)-exposure to mycotoxins is associated with human and animal health concerns as well as economic losses. The present thesis aims to apply a holistic approach for the risk assessment of mycotoxin mixtures in food and feed, i.e. from fungal production and occurrence to harmonised risk characterisation. This was done in three folds. Firstly, available environmental, ecological, and agronomic factors that may affect the relative abundance of co-occurring mycotoxins in the contaminated crops were collected from peer-reviewed literature, with focus on maize (Chapter I). Secondly, (co-)occurrence data on mycotoxins in core cereals was extracted from available articles in the scientific literature and analysed to estimate potential pattern of co-exposure in humans and animals (Chapter II). Finally, Chapter III investigates the applicability of the EFSA guidance to multiple mycotoxins through a scenario of possible co-exposure in humans and animals, using maize as a case study. In particular, a human and animal risk assessment to mycotoxin mixture in maize was conducted using a modelled component-based approach for selected mixture of mycotoxins, that, according to our data, co-occur in maize based feed and food products. / Maize is the principal staple food/feed crop exposed to mycotoxins, and the co-occurrence of multiple mycotoxins and their metabolites has been well documented. Dietary (co)-exposure to mycotoxins is associated with human and animal health concerns as well as economic losses. The present thesis aims to apply a holistic approach for the risk assessment of mycotoxin mixtures in food and feed, i.e. from fungal production and occurrence to harmonised risk characterisation. This was done in three folds. Firstly, available environmental, ecological, and agronomic factors that may affect the relative abundance of co-occurring mycotoxins in the contaminated crops were collected from peer-reviewed literature, with focus on maize (Chapter I). Secondly, (co-)occurrence data on mycotoxins in core cereals was extracted from available articles in the scientific literature and analysed to estimate potential pattern of co-exposure in humans and animals (Chapter II). Finally, Chapter III investigates the applicability of the EFSA guidance to multiple mycotoxins through a scenario of possible co-exposure in humans and animals, using maize as a case study. In particular, a human and animal risk assessment to mycotoxin mixture in maize was conducted using a modelled component-based approach for selected mixture of mycotoxins, that, according to our data, co-occur in maize based feed and food products.