Growing concerns about climate change, foreign oil dependency, and environmental quality have fostered interest in perennial native grasses (e.g. switchgrass [Panicum virgatum]) for bioenergy production while also maintaining biodiversity and ecosystem function. However, biofuel cultivation in marginal landscapes such as airport grasslands may have detrimental effects on aviation safety as well as demography and conservation efforts for grassland birds including Dickcissels (Spiza americana). In 2011–2013 I studied the response of avian populations to vegetation composition and harvest frequency of switchgrass monocultures and native warm-season grass (NWSG) mixtures at B. Bryan farms in Clay Co. MS, USA. Four treatments incorporating switchgrass and NWSG with single and multiple annual harvesting were established on 16 experimental plots. I examined the relative abundance, aviation risk, and conservation value of birds associated with these treatments, evaluated contributions of habitat attributes and individual male quality towards territory productivity and determined effects of harvest regimens on nest success, nest density, and productivity for Dickcissels. Avian relative abundance was greater in switchgrass plots during winter months, whereas NWSG was favored by species during the breeding season. Conversely, treatment differences in aviation risk and conservation value were not biologically significant. Only 2.6% of observations included avian species of high risk to aircraft, suggesting that it may be feasible to use semi-natural grasslands at airports to provide grassland bird habitat while concurrently minimizing aviation risk. Regarding individual and habitat quality effects on nest survival and productivity, male song rate was not an effective surrogate for individual quality in demographic models. However, nest survival declined with increasing territory size and territories established earlier in the season had greater territory productivity relative to later arriving males, providing evidence that some metric of individual quality is important for grassland bird reproduction. Additionally, vegetation composition and harvest frequencies influenced nest density and productivity, but not nest survival. Native warm season grasses contained 54–64 times more nests relative to switchgrass treatments, and nest density was 10% greater in single harvest plots. My results suggest semi-natural grasslands can support grassland bird conservation while allowing for biofuel production and aviation risk management in airport landscapes.

Managed forest ecosystems contribute to conservation of wildlife, and generally yield heterogeneous landscapes with patches that support different sessile organisms. Edges or boundaries between adjacent forest patches are often ecologically distinct from patch interiors and can have direct influences on community dynamics and ecosystem functioning near them. To quantify effects of edge and adjacent habitat conditions on avian metrics, I used a hierarchical multi-species occupancy model that considered individual species resource requirements to estimate community occupancy patterns, and used artificial nest surveys to model daily nest survival (DNS) using a Bayesian framework. Results indicated that adjacent forest conditions influenced bird population dynamics in focal forest stands, provided little evidence of an edge effect on avian community response patterns, and showed highest DNS in newly established forest stands. My results highlight the importance of considering type and spatial arrangement of different habitat patches for habitat planning operations on managed forest landscapes.

Declining populations of greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) have increased stakeholder concerns regarding the management and stability of the species range-wide. Numerous conservation strategies have been identified to restoring sage-grouse population declines to include species translocations. Translocations have been used for many different wildlife species to help sustain genetic heterogeneity, reestablish, and augment declining populations. In a recent translocation study, researchers identified the protocols used to successfully translocate sage-grouse to restore declining populations in Strawberry Valley, Utah. This translocation occurred in a high elevation basin buffered by geomorphic barriers. I evaluated these protocols for use in translocating sage-grouse to augment a declining population that inhabited Anthro Mountain in northwest Utah. Anthro Mountain is a high elevation mountain dominated by sagebrush (Artemisia spp.) void of geomorphic barriers. I compared annual production, survival (i.e., vital rates), habitat use, and movements of translocated birds and their progeny to the resident population. Lastly, I described the integration of translocated birds with resident birds and the overall efficacy of the translocation effort. I radio-collared and monitored 60 translocated female sage-grouse from Parker Mountain, Utah over a 2-year period (2009 and 2010) and compared their vital rates to 19 radio-marked resident sage-grouse. Adult survival was similar for resident and translocated birds, but higher for both groups in 2010 than in 2009. However, overall survival of both resident and translocated birds was lower than range-wide survival estimates. Nest success was slightly higher for resident birds than translocated birds but positively correlated to grass height for both groups. Chick survival was also slightly higher for resident birds than for translocated birds, and higher overall in 2010 than in 2009. Chick survival was positively correlated to grass cover for both groups. Translocated birds used similar habitats and exhibited migration behaviors similar to resident birds. From a methodology perspective, the translocations protocols were successful because the translocated birds quickly acclimated to the release area, and their survival and reproductive success were similar to the resident birds. The effect of the translocation on augmenting the local population was inconclusive.

Doctor of Philosophy / Division of Biology / Brett K. Sandercock / Impacts of climate change on biological systems include shifts in seasonal phenology. How do migratory animals adjust reproductive decisions as they shift timing of breeding? I investigated patterns of climate change at a network of Arctic sites in Alaska and Canada, and examined the impacts of climate change on the breeding phenology, reproductive performance, and trophic interactions of Arctic-breeding shorebirds. First, I compared the breeding performance of three species, Western Sandpiper, Semipalmated Sandpiper, and Red-necked Phalaropes, at Nome, Alaska, across a 14-year interval. I found that shorebirds responded to a decreasing temperature during laying by delaying timing of breeding. Delayed breeding shortened the incubation duration for two biparental species but extended incubation for a uniparental species. Despite a short Arctic summer, the breeding windows of three sympatric species were temporally distinct. The three species often nested within several meters from each other, but bred under different temperature regimes and adjusted their reproductive output to different sets of environmental factors. Shifts in breeding phenology can disrupt trophic interactions, especially the phenological match between peak prey availability and hatching of shorebirds. Comparing the extent of phenological mismatch between six shorebirds and their invertebrate prey at ten Arctic sites, peak demand of shorebird broods occurred on average 3.8 days (± 13.8) later than local food peaks, and population demand curves overlapped with food curves by 47% (± 14%). Latitudinal and longitudinal gradients in the extent of trophic mismatch were mediated through geographic variation in the seasonal phenology of invertebrates and shorebirds. For individual nests, both more northerly and easterly sites showed greater phenological mismatch with annual food peaks. Delayed emergence of food peaks at more northerly and easterly sites alleviated the extent of phenological mismatch. My multi-site study provides the first evidence that large-scale geographic processes can determine the extent of phenological mismatch in a bitrophic system. Trends of climate change are sensitive to breeding stages and also vary along a longitudinal gradient. Variability in climatic trends in the Arctic, combined with species-dependent responses to local climate change, indicate that it will be challenging to predict the impacts of future climate change.

As shrubland bird populations decline, there is a critical need to understand the effects of habitat management. I studied a population of color-banded prairie warblers (Setophaga discolor) between 2008-2011 in a shifting mosaic landscape within a Massachusetts inland, pitch pine-scrub oak barren consisting of persistent, newly created, succeeding, and disturbed habitats. I present data showing that the abundance and population structure at this site appears to be a function of colonization of newly created habitat by second-year birds, which are likely excluded from mature early-successional habitat by site-faithful older birds. Breeding season fecundity did not differ significantly between newly-created and mature habitats. Birds displaced by mowing or fire dispersed to nearby suitable habitat the following year, had relatively similar reproductive success, and did not negatively affect pairing or reproductive success in adjacent areas. My findings are novel and show that the effects of shrubland management on shrubland birds are beneficial in the short- and long-term. I also examined prairie warbler nest-site selection and nest survival in relation to plant leafing phenology and other factors. Prairie warblers selected distinct nest sites and certain attributes of these selected sites increased nest survival; thus I conclude that nest-site selection is adaptive. Plant leafing phenology influenced nest-site selection and nest survival in this system; its effects on birds should be considered as a potential mechanism by which bird communities can be affected by global climate change.

Master of Science / Department of Biology / David A. Haukos / The lesser prairie-chicken (Tympanuchus pallidicinctus) is a species of prairie grouse native to the southwest Great Plains. Population declines and threats to populations of lesser prairie-chickens led U.S. Fish and Wildlife Service to list the species as “threatened” under the protection of the Endangered Species Act in May 2014. Lesser prairie-chickens are found within three distinct ecoregions of Kansas and Colorado and portions of the species’ range are affected by tree encroachment into grasslands. The effect of trees on lesser prairie-chickens is poorly understood. I evaluated habitat selection and reproductive success and across the northern portion of the species’ range. I captured female lesser prairie-chickens within the three different ecoregions in Kansas and Colorado to track nest and brood survival and measure nest and brood habitat. My findings show that there are regional and annual variations in nest and brood survival. Mean nest survival during 2013 and 2014 was estimated to be 0.388 (95% CI = 0.343 – 0.433) for a 35-day exposure period. Brood survival during 2013 and 2014 was estimated to be 0.316 (95% CI = 0.184 – 0.457) for 56 days. Chick survival was the lowest during the first week of life and is probably a limiting factor for population growth. Chick and brood survival decreased as Julian hatch date increased. Across the northern portion of the species’ range, females consistently select visual obstruction between 2-3 dm. Vegetation at the nest changes between regions and years to reflect environmental and regional conditions. Broods consistently selected habitats with greater percent cover of forbs than was expected at random across all study sites. Broods also selected against areas of bare ground. The threshold of lesser prairie-chicken use was 2 trees/ha throughout the year. No nests were located within areas with greater densities. Lesser prairie-chickens had a greater probability of use at greater distances from trees and at lower tree densities. To provide adequate nesting habitat managers should provide 2-3 dm of visual obstruction. Providing forb cover with visual obstruction between 2.5-5 dm near nesting habitat should provide adequate habitat for broods. Removing trees in core habitats and expand removal efforts outward should expand potential habitat for lesser prairie-chickens.

Over the past century, populations of North American grassland songbirds have declined sharply as a consequence of habitat destruction. Alberta’s mixed-grass prairie constitutes Canada’s largest remaining tract of native grassland. However, this region has recently undergone a rapid expansion of conventional oil and natural gas development, and few studies have documented its effects on songbird nesting success. During the 2012-2014 breeding seasons, I monitored 813 nests of grassland songbirds located at sites that varied with respect to presence/absence, distance from, and types of oil and gas infrastructure (pump jacks, screw pumps, compressor stations) and gravel roads. Nest survival was significantly lower at infrastructure sites relative to controls for both Savannah sparrow and vesper sparrow. Additionally, vesper sparrow nest density was greater within 100 m of structures. These findings suggest that habitat disturbance caused by infrastructure may result in increased frequencies of nest predation at multiple spatial scales. / February 2016

Snowy plovers (Charadrius nivosus) are small, ground-nesting shorebirds that are a species of conservation concern throughout North America. Despite increased efforts to understand factors contributing to the decline of snowy plover, little is known about habitat selection and breeding ecology of snowy plover for the large population found in the Great Basin. We tested hypotheses concerning the occupancy and nesting success of snowy plover. First, we identified factors influencing snowy plover nest survival at Great Salt Lake, Utah. We hypothesized that snowy plover would demonstrate differences in nest survival rates across years due to differences in habitat characteristics, predator abundance, human influence, resource availability, and fluctuating water levels. We conducted nest surveys at five sites along the Great Salt Lake to locate new nests or monitor known nests until nest fate was determined. We found 608 nests between 2003, 2005-2010, and 2012. The most common cause of nest failure was predation, followed by weather, abandonment, and trampling. Nest survival estimates ranged from 4.6 -- 46.4% with considerable yearly variation. There was no correlation between researcher activity (visits to nests and trapping of adults) and nest survival. Nests in close proximity to roads had lower survival than nests far from roads. Nests located on barren mudflats also had lower survival than nests in vegetated areas or near debris. We found that nests had a higher probability of survival as they increased in incubation stage. Because nesting areas around the Great Salt Lake host some of the largest concentrations of breeding snowy plover in North America, we suggest that managers consider measures to maintain suitable nesting habitat for snowy plover. Second, we determined factors affecting snowy plover occupancy and detection probabilities in western Utah between 2011 and 2012. We hypothesized that snowy plover would be associated with spring water flows and sparsely vegetated salt flats. We made repeated visits to randomly selected survey plots recording the number of snowy plover adults and habitat characteristics within each plot. We modeled the relationship between snowy plover detection probability and habitat and environmental characteristics. The detection probability was 77% (95% CI = 64 -- 86%) and did not vary by year. There was a positive relationship between ambient temperature and detection probability. Next, we modeled the relationship between snowy plover occupancy and individual habitat characteristics including distance to water, distance to roads, land cover types, and vegetative characteristics. Snowy plover occupancy did not vary by year and was estimated at 12% (95% CI = 7 -- 21%). Occupancy was best predicted by close proximity to water, playa land cover, and minimal shrub cover. We used habitat characteristics that best predicted snowy plover occupancy to generate a predictive habitat model that can help prioritize future snowy plover surveys and guide conservation efforts.

Population growth for species with long lifespans and low reproductive rates (i.e., K-selected species) is influenced primarily by both survival of adult females and survival of young. Because survival of adults and young is influenced by habitat quality and resource availability, it is important for managers to understand factors that influence habitat selection during the period of reproduction. My thesis contains two chapters addressing this issue for K-selected species in Utah. Chapter one evaluates habitat selection of greater sage-grouse (Centrocercusurophasianus) on Diamond Mountain during the critical nesting and brood-rearing period. Chapter two address selection of birth sites by bison (Bison bison) on Antelope Island, Utah. We collected micro-habitat data for 88 nests and 138 brood locations of greater sage-grouse from 2010-2012 to determine habitat preferences of nesting and brooding sage-grouse. Using random forests modeling techniques, we found that percent sagebrush, percent canopy cover, percent total shrubs, and percent obscurity (Robel pole) best differentiated nest locations from random locations with selection of higher values in each case. We used a 26-day nesting period to determine an average nest survival rate of 0.35 (95% CI = 0.23 – 0.47) for adults and 0.31 (95% CI = 0.14 – 0.50) for juvenile grouse.Brood sites were closer to habitat edges, contained more forbs and less rock than random locations. Average annual adult female survival across the two-year study period was 0.52 (95% CI= 0.38 – 0.65) compared to 0.43 (95% CI= 0.28 – 0.59) for yearlings.Brooding and nesting habitat at use locations on Diamond Mountain met or exceeded published guidelines for everything but forb cover at nest sites. Adult and juvenile survival rates were in line with average values from around the range whereas nest success was on the low end of reported values. For bison, we quantified variables surrounding 35 birth sites and 100 random sites during 2010 and 2011 on Antelope Island State Park. We found females selected birth sites based on landscape attributes such as curvature and elevation, but also distance to anthropogenic features (i.e., human structures such as roads or trails). Models with variables quantifying the surrounding vegetation received no support.Coefficients associated with top models indicated that areas near anthropogenic features had a lower probability of selection as birth sites. Our model predicted 91% of observed birth sites in medium-high or high probability categories. This model of birthing habitat, in cooperation with data of birth timing, provides biologists with a map of high-probability birthing areas and a time of year in which human access to trails or roads could be minimized to reduce conflict between recreation and female bison.

Bumblebees have undergone dramatic declines both in Britain and further afield during the last century. Bumblebees provide a crucial pollination service to both crops and wild flowers. For these reasons, they have received a great deal of research attention over the years. However, the ecology of wild bumblebee nests and the interactions between nests and other species, particularly vertebrates has been somewhat understudied. This is largely due to the difficulty in finding sufficient nests for well replicated study and a lack of appropriate methods of observation. Here, methods for locating bumblebee nests were trialled. It was found that a specially trained bumblebee nest detection dog did not discover nests any faster than people who had received minimal instruction. Numbers of nest site searching queens provide a reliable indication of suitable nesting habitat (i.e. places where nests are more likely to be found). In order to investigate aspects of bumblebee nesting ecology wild nests were observed by filming or regular observations by either researchers or members of the public. Some buff-tailed bumblebee (Bombus terrestris) nests were collected and all the bumblebees were genotyped to identify any foreign individuals. A review of British mammalian dietary literature was conducted to identify those that predate bumblebees. Great tits (Parus major) were filmed predating bumblebees at nests and it was clear from the literature and observations that badger (Meles meles), pine martens (Martes martes) and hedgehogs (Erinaceus europaeus) predate bumblebee nests, as well as the wax moth (Aphomia sociella). No evidence for predation by any other vertebrate species was found. Behaviours recorded included parasitism by Psithyrus, apparent nectar theft and possible usurpation by true bumblebees, egg-dumping by foreign queens and drifting and drifter reproduction by foreign workers. These events may cause harm to colonies (for example, through horizontal transmission of pathogens, or exploitation of the host nest’s resources). Alternatively where for example, usurpation by true bumblebees, egg-dumping or drifting is successful, these alternative reproductive strategies may increase the effective population size by enabling a single nest to produce reproductives of more than one breeding female. These data found that wild buff-tailed bumblebees (B. terrestris) nests with a greater proportion of workers infected with Crithidia bombi were less likely to produce gynes than those with fewer infected workers. Gyne production also varied dramatically between years. There is a growing body of evidence that a class of frequently used insecticides called neonicotinoids are negatively impacting bumblebees. An experiment was conducted using commercial colonies of buff-tailed bumblebees (B. terrestris) which were fed pollen and nectar which had been treated with the neonicotinoid imidacloprid at field realistic, sub-lethal levels. Treated colonies, produced 85-90% fewer gynes than control colonies. If this trend is representative of natural nests feeding on treated crops, for example, oilseed rape and field beans or garden flowers, then this would be expected to cause dramatic population declines. In this thesis methods for locating bumblebee nests have been tested, new behaviours have been identified (for example, egg-dumping by queens and predation by great tits) and estimations for rates of fecundity and destruction by various factors have been provided. Doubt has been cast over the status of some mammals as predators of bumblebee nests and estimates for gyne production, nest longevity, etc, have been given. More work is needed, especially observations of incipient nests as this is when the greatest losses are thought to occur.