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The function of biomacromolecules is controlled by their structure and conformational flexibility. Investigating the structure of biologically important macromolecules can, therefore, yield information that could explain their complex biological function. In addition to X ray crystallography and nuclear magnetic resonance (NMR) methods, pulsed electron paramagnetic resonance (EPR) methods, in particular the pulsed electron electron double resonance (PELDOR) technique has, during the last decade, become a valuable tool for structural determination of macromolecules. Long range distance constraints obtained from pulsed EPR measurements, make it possible to carry out structural refinements on structures from NMR and X ray methods. In addition, EPR yields distance distributions that give information about structural flexibility. The use of EPR for structural studies of biomacromolecules requires in most cases site specific incorporation of paramagnetic centres known as spin labelling. To date, spin labelling nucleic acids has required complex spin labelling chemistry. The first application of a site directed and noncovalent spin labelling method for distance measurements on DNA is described. It is demonstrated that noncovalent spin labelling with a rigid spin label can afford detailed information on internal DNA dynamics using PELDOR. Furthermore, it is shown that noncovalent spin labelling can be used to study DNA protein complexes. PELDOR can also yield information about spin label orientation. Therefore, spin labels with limited flexibility can be used to measure the relative orientation of the spin labelled sites. Although information on orientation can be obtained from 9.7 GHz PELDOR measurements in selected applications, measurements at 97 GHz or higher, increases orientation selection. It is shown that PELDOR measurements on semi rigid and rigid nitroxide biradicals using a home built high power 97 GHz EPR spectrometer (Hiper) and model based simulations yield quantitative information on spin label orientations and dynamics. The most widely used spin labels for EPR studies on biomacromolecules are the aminoxyl (nitroxide) radicals. The major drawbacks of nitroxide spin labels include low sensitivity for distance measurements, fast spin spin relaxation in solution and limited stability in reducing environments. Carbon centered triarylmethyl (trityl) radicals have properties that could eliminate some of the limitations of nitroxide spin labels. To evaluate the use of trityl spin labels for nanometer distance measurements, models systems with trityl and nitroxide spin labels were measured using PELDOR and Double Quantum Coherence (DQC). This study shows that trityl spin labels yield reliable information on interlabel distances and dynamics, establishing the trityl radical as a viable spin label for structural studies on biomacromolecules.

Os radicais nitróxidos tem sido muito utilizados em estudos de sistemas biológicos através do método de marcagem de spin. Apesar do grande número de publicações sobre aplicações, o número de estudos das propriedades intrínsecas dos nitróxidos ê bem reduzido. A importância de tais estudos é grande uma vez que o estudo de um sistema simples permite avaliar e interpretar os resultados dos sistemas biológicos, geralmente mais complicados Assim no presente trabalho estudou-se o espectro do RPE do 4-hidroxi-2,2,6,6-tetrametil piperidina-1 oxil (I) introduzido como impureza na sua matriz diamagnética 4-hidroxi-2,2,6,6-tetrametilpiperidina (II). Este processo de dopagem muito utilizado em física do estado sólido permitiu a determinação dos tensores g e A. Os valores obtidos gxx = 2.0098, gyy = 2.0061, gzz = 2.0024, e A xx = 5.3 G, Ayy = 7.0 G, Azz = 35.0 G, encontram-se dentro do esperado sendo que o valor de go = 2.0061 e Ao = 15.8 G evidencia a interação do fragmento N-O com ponte de hidrogênio (de hidroxila na posição 4 de uma molécula vizinha). A existência de dois centros paramagnéticos inequivalentes é interpretada corno devido a presença de duas possíveis conformações do fragmento N-O. As larguras das linhas de RPE observadas são grandes e em certas orientações do campo magnético ocorre o desdobramento da transição eletrônica num dubleto devido a interação com o hidrogênio da hidroxiIa que faz ponte com o N-O. A temperatura de cerca de -140&#176C e observada uma mudança sensível nos espectros de RPE evidenciando a desaparição da estrutura hiperfina na região de Axx e Ayy. Esta mudança está relacionada com o congelamento da rotação dos grupos metila afetando assim a interação dos prótons destes grupos com o elétron do fragmento N-O. O sistema estudado parece ser extremamente interessante do ponto de vista do estudo de influência de prótons na relaxação eletrônica do radical nitroxido. É evidenciada a forte dependência das propriedades paramagnéticas do nitróxido em relação à estrutura da vizinhança do fragmento N-O. / Nitroxide radicals are being used in many studies of biological systems through the spin label method. Despite the great number of publications involving the application of nitroxides only a reduced number of work s about nitroxides themselves is known. These studies are important because the knowledge of the properties of simple systems could be used in the interpretation of results in biological systems, normally mare complicated. In the present work the EPR spectra of 4-hydraxy-2,2,6,6-tetramethyl piperidine-l oxyl (I) introduced as impurity in the diamagnetic matrix of 4-hidraxy-2,2,6,6-tetramethyl piperidine (II) were studied. This process commonly used in solid state physics made it possible the determination of the g and A tensors. The values obtained : gxx = 2.0098, gyy = 2.0061, gzz = 2.0024, and A xx = 5.3 G, Ayy = 7.0 G, Azz = 35.0 G are typical for nitroxides. The mean values go = 2.0061 and Ao 15.8G are consistent with the presence af hydrogen bond to the N-O fragment (this bond is made with the proton of a hydroxyl in position 4 of a neighbour molecule). The existence of two magnetically inequivalent centers is interpreted so that two different conformations for the N-O fragment are possible. The line widths of the EPR lines are quite great and for some orientations of the magnetic field a splitting of the electronic transition in to a dublet occur. This splitting is due to the interaction of the electron in the N-Q fragment with the hydroxyl hydrogen which is bonded to the nitroxide group. At a temperature around -140&#176C a change in the EPR spectra is observed, when the hyperfine nitrogen structure in the region of A and A disappear. This change x y is related to the freezing of the rotation of the methyl groups affecting the interaction of the protons of these groups with the electron in the N-O. The system studied in the present work seems to be very interesting from the point of view of the influence of the protons in the electronic relaxation in the nitroxide radical. ln this context the strong dependency of the properties of the nitroxide relative to the structure of the neighbouring of the N-O fragment become evident.

Os radicais nitróxidos tem sido muito utilizados em estudos de sistemas biológicos através do método de marcagem de spin. Apesar do grande número de publicações sobre aplicações, o número de estudos das propriedades intrínsecas dos nitróxidos ê bem reduzido. A importância de tais estudos é grande uma vez que o estudo de um sistema simples permite avaliar e interpretar os resultados dos sistemas biológicos, geralmente mais complicados Assim no presente trabalho estudou-se o espectro do RPE do 4-hidroxi-2,2,6,6-tetrametil piperidina-1 oxil (I) introduzido como impureza na sua matriz diamagnética 4-hidroxi-2,2,6,6-tetrametilpiperidina (II). Este processo de dopagem muito utilizado em física do estado sólido permitiu a determinação dos tensores g e A. Os valores obtidos gxx = 2.0098, gyy = 2.0061, gzz = 2.0024, e A xx = 5.3 G, Ayy = 7.0 G, Azz = 35.0 G, encontram-se dentro do esperado sendo que o valor de go = 2.0061 e Ao = 15.8 G evidencia a interação do fragmento N-O com ponte de hidrogênio (de hidroxila na posição 4 de uma molécula vizinha). A existência de dois centros paramagnéticos inequivalentes é interpretada corno devido a presença de duas possíveis conformações do fragmento N-O. As larguras das linhas de RPE observadas são grandes e em certas orientações do campo magnético ocorre o desdobramento da transição eletrônica num dubleto devido a interação com o hidrogênio da hidroxiIa que faz ponte com o N-O. A temperatura de cerca de -140&#176C e observada uma mudança sensível nos espectros de RPE evidenciando a desaparição da estrutura hiperfina na região de Axx e Ayy. Esta mudança está relacionada com o congelamento da rotação dos grupos metila afetando assim a interação dos prótons destes grupos com o elétron do fragmento N-O. O sistema estudado parece ser extremamente interessante do ponto de vista do estudo de influência de prótons na relaxação eletrônica do radical nitroxido. É evidenciada a forte dependência das propriedades paramagnéticas do nitróxido em relação à estrutura da vizinhança do fragmento N-O. / Nitroxide radicals are being used in many studies of biological systems through the spin label method. Despite the great number of publications involving the application of nitroxides only a reduced number of work s about nitroxides themselves is known. These studies are important because the knowledge of the properties of simple systems could be used in the interpretation of results in biological systems, normally mare complicated. In the present work the EPR spectra of 4-hydraxy-2,2,6,6-tetramethyl piperidine-l oxyl (I) introduced as impurity in the diamagnetic matrix of 4-hidraxy-2,2,6,6-tetramethyl piperidine (II) were studied. This process commonly used in solid state physics made it possible the determination of the g and A tensors. The values obtained : gxx = 2.0098, gyy = 2.0061, gzz = 2.0024, and A xx = 5.3 G, Ayy = 7.0 G, Azz = 35.0 G are typical for nitroxides. The mean values go = 2.0061 and Ao 15.8G are consistent with the presence af hydrogen bond to the N-O fragment (this bond is made with the proton of a hydroxyl in position 4 of a neighbour molecule). The existence of two magnetically inequivalent centers is interpreted so that two different conformations for the N-O fragment are possible. The line widths of the EPR lines are quite great and for some orientations of the magnetic field a splitting of the electronic transition in to a dublet occur. This splitting is due to the interaction of the electron in the N-Q fragment with the hydroxyl hydrogen which is bonded to the nitroxide group. At a temperature around -140&#176C a change in the EPR spectra is observed, when the hyperfine nitrogen structure in the region of A and A disappear. This change x y is related to the freezing of the rotation of the methyl groups affecting the interaction of the protons of these groups with the electron in the N-O. The system studied in the present work seems to be very interesting from the point of view of the influence of the protons in the electronic relaxation in the nitroxide radical. ln this context the strong dependency of the properties of the nitroxide relative to the structure of the neighbouring of the N-O fragment become evident.

The Ph.D. thesis was focused on EPR study of redox reactions of selected types of phenols, secondary amines and diperoxy coumpounds. Within the study some redox agents were employed in nonpolar, in some special cases also in polar solvents. EPR spectra of generated radical products were interpreted using spectral simulation. Study of radical reactions under participation of phenols was preferentially concentrated on the behavior of para methyl substituted phenols, where the instability of this substituent in relation to the applied redox agents was evaluated. The tendency towards the abstraction of hydrogen from methyl group, representing the paralell mechanism to the hydrogen abstaction from phenolic OH group was proved. The generated benzyl radicals were undirectly detected in the form of adducts with aromatic nitroso compounds. These adducts undergo the consecutive transformations, leading to the formation of new types of phenoxy radicals. The study of the decomposition of NH bonds was performed with substituted N,N´-paraphenylenediamines, 1-anilino-1-phenylpentane-3-ones and amino substituted 1,3-dimethyluracils. By the oxidation with 3-chloroperbenzoic acid the corresponding nitroxyl radicals were prepared. In the case of 1-anilino-1-phenylpentane-3-ones the aminyl radicals were prepared by the oxidation with PbO2, which existence was evidenced by spin trapping method with nitrosobenzene. In the framework of the investigation of the decomposition of -O-O- bonds the oxygen centred radicals, generated from peroxidic compounds of Luperox type using selected redox agents were detected by spin trapping method. The analysis of EPR spectra documented that primary alkoxyl radicals undergo the consecutive fragmentation, which leads in the presence of oxygen to the formation of secondary alkoxyl radicals. The generation of oxygen centred radicals during the decomposition was indirectly proved in the presence of model phenolic compounds, where due to the abstraction of hydrogen from phenolic OH group the phenoxyl radicals are formed.

Ce travail fait l’objet d’une avancée scientifique dans le développement de la technique d’IRM rehaussée par l’effet Overhauser dans la souris à 0,2 T. Cette dernière repose sur le transfert de polarisation des spins électroniques saturés d’un radical libre vers les spins des protons (généralement de l’eau) voisins pour rehausser le signal RMN du proton. Notre équipe a développé cette technique pour détecter une activité protéolytique au travers de deux stratégies. La première partie de la thèse a été de détecter pour la première fois une activité protéolytique in situ dans des souris saines et in vitro sur cellules vivantes. L’efficacité du rehaussement par effet Overhauser repose sur le temps de corrélation des spins des électrons non-appariés. Un radical nitroxyde greffé à l’élastine a été utilisé comme substrat. La protéolyse de ce dernier par des élastases pancréatiques a conduit l’observation en 3D d’un rehaussement du signal RMN de plus de 10 fois dans le tube digestif de souris vivantes. De plus, des développements méthodologiques, tels que l’implémentation de la séquence TrueFISP, le sous-échantillonnage par la méthode “Keyhole”, et la reconstruction des données en 3D ont été faits. La deuxième stratégie repose sur des molécules de nitroxyde ayant l’unique propriété de pouvoir décaler leurs pics de résonance après hydrolyse. Un nitroxyde phosphorylé en position Béta pouvant être détecté à deux fréquences spécifiques différentes avant et après hydrolyse d’un groupement chimique a été synthétisé par des chimistes à Marseille. L’hydrolyse de cette macromolécule a été observée in vivo dans l’estomac de souris saines avec des rehaussements de plus de 400% et imagée en 3D avec une bonne résolution spatio-temporelle. Ainsi, une prochaine étape serait de poursuivre ce travail sur un modèle pathologique et développer cette technique à un champ magnétique plus bas. / This work relates the continuity and advances in the implementation of the Overhauser-enhanced Magnetic Resonance Imaging technique on a 0.2 T scanner. Briefly, OMRI technique is based on polarization transfer of saturated electronic spins from free nitroxide radicals to proton spins of surrounding water molecules in the aim to drastically enhance proton NMR signal. To this technique, our research team has merged specific strategies for proteolytic activity detection. The first strategy relies on a 3D visualization of proteolytic activity happening in intact living cells or in vivo in healthy mice. With an Overhauser switch based upon changes in molecular tumbling time, high Overhauser enhancements of 10-fold were observed in the intestinal tract of mice after that elastolytic activity of our probe: the nitroxide-labeled elastin macromolecule took place. In addition, MRI developments - TrueFISP sequence implementation, undersampling Keyhole method and data reconstruction were carried out for imaging these rapid biological processes. A second exquisite strategy is also described using nitroxides with shifting resonant peaks. Here, a Beta-phosphorylated nitroxide molecule was specifically detected at two distinct frequencies: one for its substrate and the other for its product once hydrolysis took place. This hydrolysis was imaged in 3D in the stomach of living mice with Overhauser enhancements of more than 400% and with a good spatiotemporal resolution. The perspectives of this work lie on a future detection of a pathological proteolytic activity in vivo and eventually and development of very low magnetic field OMRI.