Untersuchungen zum Wasserferntransport wurden mit Hife der Druckmeßsonden- und NMR-Bildgebungstechnik durchgeführt. Dabei wurden Experimente zum Einfluß der Schwerkraft auf den Wasserferntransport an einer Liane bei unterschiedlicher Orientierung der Pflanze durchgeführt. Der zweite Teil der Arbeit beschäftigte sich mit der Korrelation von Flußgeschwindigkeiten und Xylemdruck in den Wasserleitungsbahnen gut gewässerter und trockengestreßter Pflanzen. Der dritte Teil befasste sich mit der Wiederbefüllung von kavitierten oder leeren Xylemgefäßen anhand der Auferstehungspflanze Myrothamnus flabellifolia. / Investigations on the water transport were done by means of the pressure probe and NMR-imaging-techniques. Measurements were performed on a liana to determine the influence of gravity on water transport while the plant was placed into different orientations. The second part of this dissertation dealed with the correlation of flow velocity and xylem pressure in well-hydrated and drought-stressed plants. The third part investigated the refilling of cavitated or empty xylem conduits by means of the resurrection plant Myrothamnus flabellifolia.

Abstract The equilibrium of aqueous D-glucaric acid was investigated via Nuclear Magnetic Resonance (NMR) spectroscopy. The NMR spectra of all four species (D-glucaric acid, D-glucaro-1,4-lactone, D-glucaro-6,3- lactone and D-glucaro-1,4;6,3-lactone) were assigned. A 1H NMR spectroscopy method was developed to investigate the kinetics of equilibration of the starting species (D-glucaro-1,4-lactone and D-glucaro-1,4;6,3-dilactone). The equilibration was investigated under neutral conditions as well as conditions with increasing acidity. Each experiment set contained 50-100 1HNMR spectroscopy experiments that were run on the same sample using a program that built in delays. Dimethyl sulfoxide was used as an internal standard, and its signal size was used as a scale to report the changes in relative concentration of the four species throughout the experiment sets. Under neutral conditions D-glucaro-1,4-lactone is relatively stable against equilibration, while D-glucaro-1,4;6,3-dilactone is not. Under acidic conditions both compounds equilibrate within approximately 30,000 seconds. After equilibration under acidic conditions D-glucaric acid is the dominant species, while the relative concentration of D-glucaro-1,4-lactone is slightly higher than that of D-glucaro-6,3-lactone. The relative equilibrium concentration of D-glucaro-1,4;6,3-dilactone is low. A mechanism for the equilibration of aqueous D-glucaric acid was proposed and equilibrium constants and estimates of rate constants were derived from the experimental data. These rate constants were used in MATLAB simulations that were compared to the experimental data. MATLAB simulations were used to alter the rate constants to improve the fits between experimental data and simulated data.

The transition metal complexes cyclopentadienylrhenium tricarbonyl [CpRe(CO)3, Cp = cyclopentadienyl] and (isopropylcyclopentadienyl)rhenium tricarbonyl [(i-PrCp)Re(CO)3, i-Pr = isopropyl] were photolysed in alkanes at low temperature and the resulting alkane complexes, of the general formula Cp'Re(CO)2(alkane) (Cp' = Cp or (i-PrCp)), were studied using NMR spectroscopy. Characteristic proton chemical shifts (δ) and couplings (3JHH) were observed for alkane complexes of several linear, branched and cyclic alkanes of up to eight carbons. Alkanes with chemically distinct methyl (CH3) and/or methylene (CH2) units were observed alternatively binding through each unit to rhenium. No bound methine unit was observed. Large C-H coupling constants (1JCH) were observed for protons of several bound CH3 and CH2 units, indicating the bound C-H is intact. These species are, thus, alkane sigma (σ) complexes, wherein the alkane has an agostic (M-H-C, 3 centre 2 electron) interaction with the rhenium centre. The CH3 binding mode of (i-PrCp)Re(CO)2(1-pentane) was elucidated; sequential deuteration in the bound CH3 revealed an equilibrium isotope effect (EIE) in the remaining proton/s, confirming that only one C-H has an agostic interaction with rhenium at any instant . NMR parameters δ(1H) (-8.22), δ(13C) ( 42.4) and 1JCH (85 Hz) for the complexed C-H reveal it is unequivocally intact and yet strongly interacting with the rhenium centre, hallmarks for the agostic interaction. Intramolecular exchange was identified between pentane complex isomers Cp'Re(CO)2(1-pentane), Cp'Re(CO)2(2-pentane) and Cp'Re(CO)2(3-pentane). Equilibrium constants were determined, revealing a preference for CH2 binding over CH3. The inequivalent hydrogens found in methylene groups of cyclohexane at low temperature permitted simultaneous observation of axial and equatorial C-H protons of a bound CH2 in CpRe(CO)2(cyclohexane); an EIE, upon deuteration, indicated rapid exchange between complexed C-H bonds in the bound CH2 unit. The rhenium centre was found to prefer complexation of the axial C-H bond, over the equatorial, with K ~2.9. Intermolecular exchange of alkane ligands with free solvent was directly observed, in the competitive complexation of the [CpRe(CO)2] fragment to different alkanes in binary mixtures. The preference cyclohexane > cyclopentane > pentane > isobutane was established and equilibrium constants determined. The kinetics were followed by NMR and modelled, revealing rate constants; decay rates were also determined.

No description available.

Electron transport systems exist in the plasma membranes of all cells. Although not well characterised they play roles in cell growth and proliferation, hormone responses and other cell signalling events, but perhaps their most important role, especially in erythrocytes, is enabling the cell to respond to changes in both intra- and extracellular redox environments. Human erythrocytes possess a transmembrane electron transport capability that mediates the transfer of reducing equivalents from reduced intracellular species to oxidised extracellular species and is concomitant with proton extrusion. In the work for this thesis I showed that erythrocyte membranes contain a transmembrane WST-1 (water soluble tetrazolium-1) reductase activity that uses reducing equivalents from intracellular NADH to reduce extracellular WST-1. The rate of WST-1 reduction was increased by the presence of phenazine methosulfate and, although of low activity, it showed similar properties to a previously reported transmembrane NADH-oxidase activity. 1H NMR experiments showed that WST-1 was reversibly bound to the membrane and/or proteins in the membrane within the timeframe of the NMR experiment, confirming the location of the WST-1 reduction. Preliminary attempts to purify NADH:WST-1 reductase and NADH:ferricyanide reductase activities from the erythrocyte plasma membrane were inconclusive. The protein(s) responsible for the reduction of these oxidants appear to be of low abundance in the plasma membrane and may be part of a larger protein complex. Further work on the isolation of these redox activities is required before the protein(s) involved can be identified with any confidence. The ability of cells to export electrons suggests that an electron import mechanism might also exist to re-establish the cell�s redox-buffering equilibrium under conditions of oxidative stress. This hypothesis was tested in glucose-deprived erythrocytes using reduced glutathione and NADH as extracellular electron donors. It was shown that neither reduced glutathione nor NADH donated reducing equivalents through a transmembrane redox system. Extracellular NADH was, however, able to produce profound changes in starvation metabolism and methaemoglobin reduction rates. The addition of extracellular NADH caused a six-fold increase in the rate of lactate production above that observed in glucose-starved controls, together with a concomitant decrease in pyruvate production. In erythrocytes containing high levels of methaemoglobin, extracellular NADH increased the rate of methaemoglobin reduction in both the presence and absence of glucose. These results were explained by the leakage of lactate dehydrogenase from erythrocytes due to an admittedly low level of haemolysis. This caused the displacement of the intracellular pseudo-equilibrium of the lactate dehydrogenase reaction via transmembrane exchange of lactate, allowing the conversion of extracellular pyruvate to lactate and resulted in an increase in intracellular NADH concentrations. The latter increased the rate of methaemoglobin reduction. In conclusion, the work described in this thesis showed that erythrocyte membranes do not contain mechanisms for importing electrons or reducing equivalents from extracellular reduced glutathione or NADH. Erythrocytes do, however, contain an electron export system which can reduce extracellular oxidants such as WST-1 and the activity of this system depends on an intricate balance between intracellular antioxidants and enzyme activities. There is much still to be learnt about plasma membrane redox systems, little is known, for example, about the protein composition, mechanism of action, and the in vivo conditions under which these systems are most active.

Nuclear magnetic resonance (NMR) spectroscopy is a powerful approach to study the structure and dynamics of macromolecules in a close-to-native solution environment. In the present thesis I present my investigation of protein and nucleic acid structure and dynamics in a wide variety of biological systems using NMR spectroscopy. The center of attention of the Sykes laboratory for the last 35 years has been the role of the Troponin complex in the regulation of muscle contraction. Accordingly, the main focus of this thesis is the study of this important nano-machine, and how its structure and dynamics regulate its biological function. In Chapter II, the perturbation of Troponin C’s structure and dynamics by the attachment of two different bifunctional rhodamine probes is investigated. In Chapter III, the dynamics and position of the bifunctional rhodamine probe when attached on the C helix of Troponin C is studied. In Chapter IV, the structure and dynamics of tryptophan mutants of Troponin C is reported. In Chapter V, the effect of the co-solvent trifluoroethanol on the tryptophan side chain position of mutant F77W of the N-domain of Troponin C is examined. In the following chapter, Chapter VI, the structure and dynamics of a Troponin C – Troponin I chimera is studied using NMR spectroscopy and molecular dynamics simulations to assess the presence or absence of an intrinsically disordered region in Troponin I, and to assess the validity of the flycasting mechanism proposed to regulate muscle contraction. In Chapter VII and VIII, a different topic is introduced. The structural changes occurring during the denaturation process of the bovine prion protein are monitored using NMR spectroscopy to gain insights into the protein misfolding process that causes diseases. In Chapter IX, the structural impact of inserting nucleoside phosphonates into DNA are examined by reporting the NMR structure of a DNA dodecamer duplex containing the modified nucleoside Cidofovir at position 7.

No description available.

This thesis describes the study of the three-dimensional structure and dynamics of the hepatitis B virus (HBV) encapsidation signal, epsilon, by means of nuclear magnetic resonance (NMR) and mutational data. HBV replicates by reverse transcription of an RNA pregenome into the viral DNA genome, which becomes enclosed in viral particles (encapsidation). Epsilon is a stem-loop structure within the RNA pregenome and both the primary sequence and secondary structure of epsilon are strongly conserved, in agreement with its essential function of propagating HBV. Epsilon is therefore a potential target for drug design. Studying the structure of epsilon requires development of new methods in the field of structural biology, as it is such a large RNA. Knowing the structure of epsilon will help to better understand the encapsidation mechanism and priming step of reverse transcription. This will help us in the search for antiviral drugs that block epsilon and prevent the viral reverse transcriptase from binding. NMR spectroscopy is a method that provides detailed structural and dynamical data in solution under natural conditions. However, the size of the molecules that can be studied with NMR is limited. NMR spectra become more and more difficult to interpret as the size of the molecule increases. To circumvent this problem, large RNA molecules can be divided into smaller parts and only the parts essential for NMR studies are selected. The information obtained from these smaller fragments can then be used to determine the structure of the larger molecule. Furthermore, a new method of enzymatically synthesizing nucleoside triphosphates with isotopes suitable for NMR has made it possible to specifically label the RNA molecules. Using this method it is possible to derive highly detailed molecular structures of RNA up to a size of 150 nucleotides. The method of selective isotope labelling was applied to different parts of HBV epsilon. Three RNA fragments of 27 (apical loop), 36 (internal bulge) and 61 (whole epsilon) nucleotides (nt) were synthesized in the unlabelled form. The 27-nt and 36-nt RNAs were also synthesized with (13C, 15N, 1', 3', 4', 5', 5"-2H5)-labelled uridines. The 61-nt sequence was (13C, 15N)-guanidine labelled. This labelling allowed unambiguous assignment of otherwise inaccessible parameters. The unlabelled and labelled RNA sequences provided the necessary data for structure derivation of the whole epsilon. The apical loop of epsilon forms a pseudo-triloop motif. There is only one conformation of the loop that fulfils all the restraints, including experimental chemical shifts. However, the loop adopts several structures that fulfil the experimental distance, torsion angle and residual dipolar coupling restraints. This may reflect true flexibility. Indeed, relaxation studies on the unlabelled and labelled 27-nt sequences show that the residues that show multiple conformations are flexible. This can be an important feature for the recognition and subsequent binding of epsilon to the viral polymerase. The information gained on the HBV encapsidation signal is useful in our understanding of the initiation of replication of the virus. This can in turn contribute to the search for drugs against HBV.

Described in this report is stimulated echo pulsed field gradient (STE-PFG) 1H nuclear magnetic resonance (NMR) diffusion on neutral and negatively charged magnetically aligned bicelles incorporating the Pluronic tri-block copolymer F68. Bicelles are model lipid membrane systems composed of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC). Pluronic F68 incorporated into neutral bicellar mixtures (q= [DMPC]/[DHPC]= 4.5) exhibited resonance intensity decays that are non-exponential and diffusion-time dependent., i.e. non-Gaussian diffusion. In contrast, Pluronic F68 incorporated in negatively charged bicellar mixtures, containing 1 mol% 1,2-dimyristoyl-sn-glycero-3-phosphoglycerol (DMPG), showed the F68 intensity decays that are exponential and diffusion-time independent, viz., Gaussian diffusion. The implication may be that neutral bicellar mixtures incorporating Pluronic F68 consist of extended lamellae composed of meshed ribbon structures, while negatively charged bicellar mixtures incorporating Pluronic F68 consist of perforated lamellae. Pluronic F68 incorporated into the bicelles reports these morphological differences through its diffusion.

Described in this report is stimulated echo pulsed field gradient (STE-PFG) 1H nuclear magnetic resonance (NMR) diffusion on neutral and negatively charged magnetically aligned bicelles incorporating the Pluronic tri-block copolymer F68. Bicelles are model lipid membrane systems composed of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC). Pluronic F68 incorporated into neutral bicellar mixtures (q= [DMPC]/[DHPC]= 4.5) exhibited resonance intensity decays that are non-exponential and diffusion-time dependent., i.e. non-Gaussian diffusion. In contrast, Pluronic F68 incorporated in negatively charged bicellar mixtures, containing 1 mol% 1,2-dimyristoyl-sn-glycero-3-phosphoglycerol (DMPG), showed the F68 intensity decays that are exponential and diffusion-time independent, viz., Gaussian diffusion. The implication may be that neutral bicellar mixtures incorporating Pluronic F68 consist of extended lamellae composed of meshed ribbon structures, while negatively charged bicellar mixtures incorporating Pluronic F68 consist of perforated lamellae. Pluronic F68 incorporated into the bicelles reports these morphological differences through its diffusion.