In this study, biogeochemical regimes of Marguerite Bay and the adjacent part of the West Antarctic Peninsula (WAP) continental shelf were delineated through integration of nutrient, hydrographic, and biological measurements obtained during the LTER and SO GLOBEC studies during austral summer, autumn, and winter of 2001 and 2002. Marguerite Bay biogeochemical regime was found to differ from those of the adjacent WAP continental shelf. In terms of Treguer and Jacques (1992), Marguerite Bay is a combination of Coastal Continental Shelf Zone (CCSZ) and Seasonal Ice Zone (SIZ) distinguished by shallow mixing regime, high primary production and export production. At the end of the growing season (autumn) in both years, waters in Marguerite Bay were strongly depleted in nutrients (the deficits of total inorganic nitrogen (NO3-+NO2-+NH4+) and silica were >0.6 mol m-2 and >2.5 mol m-2, respectively). Observed ΔN/ΔP removal ratios of 10-12.5, lower than that of Redfield et al. (1963), and ΔSi/ΔN removal ratios as high as 4-5 indicated the dominance of diatoms. High autumnal ammonium stocks (>0.25 mol m-2) were observed in Marguerite Bay and were co-located with the areas of the highest nutrient deficits suggesting spatial coupling between primary and heterotrophic production during both years. Consistency of this feature was not disrupted by significant interannual variability of biological production in Marguerite Bay that resulted in ~30-50% reduction in nutrient deficits and ammonium stocks from the first year to the next.The other two biogeochemical regimes were at the central part of the continental shelf characterized by mixed phytoplankton community and at the outer shelf dominated by diatoms. Both regimes were characterized by considerably lower depletion of nutrients compare to those of the Marguerite Bay regime and were consistent between the two years. Interannual variability of biological production and possible sources of high ammonium stocks in Marguerite Bay were studied with a one-dimensional model, a modification of that of Walsh et al. (2001). The model attributed the decline in nutrient deficits to the difference in sea ice cover dynamics between two years. The greater sea ice presence led to the somewhat lower primary production during the second year compare to the fist one. Moreover, model's tight coupling between primary and bacterial production resulted in a decline of bacterial ammonification between the two years. Bacteria were found to be the primary source of ammonium in the Marguerite Bay model. Yet, 3-4-fold fluctuations in macro- and mesozooplankton biomass might have led to 15-25% variability in model's autumnal ammonium stocks.

Coastal low oxygen areas are expanding globally and are predicted to increase in size and duration due to climatic changes associated with a warming ocean. The Gulf of Mexico Hypoxic Zone (GoMHZ) is the second largest regularly occurring hypoxic habitat in the world and has increased in size since it was first mapped in the 1980s. The Mississippi Atchafalaya River System (MARS) floods the Louisiana continental shelf with fresh water high in nitrogenous compounds enhancing primary production which sinks to the sea floor. Stratification that occurs as a result of density differences and coastal currents creates a strong pycnocline that prevents bottom waters from being aerated causing seasonally hypoxic bottom waters (< 2.0 mg L^-1). The Mechanisms Controlling Hypoxia (MCH) project (hypoxia.tamu.edu) made regular cruises during 2004-2005 and 2007-2009 to the GoMHZ performing shelf wide hydrographic surveys and occupying central mooring sites within theoretical zones of differing hypoxic potential. Sediment cores were collected for incubation experiments using Batch Microincubation Chambers (BMICs) to measure rates of sediment community oxygen consumption and nutrient regeneration. Results of incubation experiments characterized sediments as net sources of dissolved inorganic nitrogen, mostly ammonium, and silicate and a net sink of phosphate. Modeling simulations of benthic-pelagic coupling focused in the western study zones related field measurements of benthic nutrient regeneration and primary production to important processes that maintain summertime hypoxia when surface waters are nitrogen limited. After incubations were completed macrofaunal individuals were removed from the cores enumerated and identified to the lowest possible taxon. Macrofauna communities in 2004-2005 were dominated by a hypoxia tolerant community dominated by polychaetes. Hurricanes Katrina and Rita in August and September of 2005 drastically reorganized macrobenthic communities decreasing abundances and negatively impacting diversity. These new communities collapsed under hypoxic stresses potentially impacting the ability of demersal foragers to utilize an important food resource. Large variations in biogeochemical fluxes and patchy distribution of fauna impeded the delineation of significant zones in benthic function and structure.