Thesis (Ph. D.)--University of California, Riverside, 2009. / Includes abstract. Includes bibliographical references. Issued in print and online. Available via ProQuest Digital Dissertations.

Thesis (Ph. D.)--University of Missouri-Columbia, 1998. / Typescript. Vita. Includes bibliographical references (leaves 77-86). Also available on the Internet.

Thesis (Ph. D.)--University of Missouri-Columbia, 1998. / Typescript. Vita. Includes bibliographical references (leaves 77-86). Also available on the Internet.

Thesis (M.For.Sc.)--University of Western Australia, 2007.

Thesis (Ph. D.)--Ohio State University, 2005. / Title from first page of PDF file. Includes bibliographical references (p. 157-190).

Enterohemorrhagic E. coli, EHEC, is a verotoxin producing, zoonotic pathogen, which causes diseases in humans such as bloody or watery diarrhea. Microorganisms compete for limited living space, nutrients and other resources and therefore other microorganisms are EHECs biggest competitors. To avoid outbreaks and infections with EHEC, one possible approach is to use harmless but competitive bacteria as probiotics. Therefore, the aim of this study was to evaluate three probiotic E. coli strains and their ability to outcompete EHEC in bovine feces.     Ten different cattle fecal samples from three different farms were used to mix with the three probiotic and EHEC strains. The mixture was diluted and cultivated at 0 h as a control and then incubated for 48 h at 20°C and 37°C before dilution and cultivation on CT-SMaC. Colonies was counted and ratios between EHEC and probiotic E. coli before and after incubation were calculated. Kruskal-Wallis test with Dunn’s test as post hoc test were used to see if observed reductions of EHEC were significant or not.     In 37°C, strain 10 was the only strain producing a significant reduction of EHEC. In contrast, no significant reduction was observed at 20°C in any of the strains.     Future research studying other factors and performed on live cattle models are necessary to confirm the usefulness of the studied probiotic candidates. However, these results indicate probiotics can be a useful tool to avoid infections and big outbreaks of EHEC in the future.

Master of Science / Department of Diagnostic Medicine/Pathobiology / Daniel U. Thomson / Escherichia coli O157:H7 is a human food-borne pathogen and cattle feces are a major source of contamination. Immunization against E. coli O157 may be a practical pre-harvest intervention strategy. A siderophore receptor/porin proteins (SRP) based vaccine has been developed to decrease the prevalence of E. coli O157 in cattle. Two studies were conducted to determine the efficacy of the SRP vaccine. In the first study, thirty calves were randomly assigned to one of two groups: control or SRP vaccine. Two weeks after the second vaccination, calves were orally inoculated with nalidixic acid-resistant (Nal[superscriptR]) E. coli O157. Fecal samples were collected for five weeks. Calves were necropsied on day 35 to collect gut contents and tissue swabs to determine Nal[superscriptR] E. coli O157:H7. The number of calves that were culture positive for E. coli O157 were lower (P= 0.07) in vaccinated group compared to the control. In the second study, cattle in two feedlots were randomized to SRP vaccine or control. Cattle were vaccinated on days 0 and 21. Rectal fecal samples were collected on day 0, and pen floor samples were collected on days 21, 35, and 70. Rectal fecal samples, RAMS, and hide swab samples were collected on d 85. Cattle were weighed on days 0, 21, and 85. Vaccination significantly reduced (P = 0.04) fecal E. coli O157 prevalence. There was also a decrease (P < 0.05) in E. coli O157 prevalence on hides and in fecal samples on day 85 in vaccinated cattle compared to the control.

Rapid detection of foodborne pathogen is one of the most urgent problems in the world, because foodborne pathogen could cause serious illness, such as nausea, vomiting and diarrhea. We have developed a sensitive microfluidic system based on dendrimers and aptamers for rapid detection of Escherichia coli O157:H7 at very low cells concentration. Dendrimers, with high level of functional groups and homogeneous spherical shape, are prefect nanoscale polymers used as a template material by increasing sensitivity and specificity of analytes detection in microfluidics. In this work, we develop a sensitive microfluidic system based on dendrimers and aptamers for detecting Escherichia coli O157:H7 at very low cell concentrations. Carboxyl functionalized G7-polyamidoamine (PAMAM-COOH) dendrimers are immobilized on (3-aminopropyl)-trimethoxysilane (APTMS) pretreated microfluidic channels. The aptamers are subsequently conjugated on the immobilized dendrimes through chemicals. The sensitivity and specificity are validated by injecting fluorescein isothiocyanate (FITC) labelled Escherichia coli O157:H7 at various cells concentration into the resulting microchannels, indicating that the detectable cells concentration can be reached as low as 100 (cells/ml) and the detection time is 10 hours. To further exploit and improve the work efficiency our microfluidic device, the microfluidic channel is designed into a staggered herringbone microchannel (SHM) to create the chaotic dynamics inside the microfluidic device, and the SHM is then simulated by a COMSOL software showing that the staggered herringbone structures can improve chaotic dynamics of designed microchannel and will enhance the probability of particles to attach on the surface of microdevice. All the results show that our approach has the potential to develop the field of rapid and accurate detection on foodborne pathogens.

The house fly, Musca domestica can transmit human pathogens including Escherichia coli O157:H7 through regurgitation of ingested bacteria from the crop which is a foregut organ of house fly and stores the excess ingested nutrients. Interactions between the ingested bacteria and the crop have a direct influence on bacteria persistence, survival and ultimately fly vector competence. In this research, in situ crop vessel assay was developed to investigate bacterial growth within fly crops up to 48 hours post-ingestion. Flies were fasted for 12 h prior to feeding E. coli O157:H7 pEGFP and then fed bacteria with red food color which was added to confirm that flies had consumed the bacteria. After feeding, flies with red abdomens were aseptically dissected and crops were removed and maintained in sterile phosphate buffered saline in microtiter plates held at 32˚C. For each time point (0, 24 and 48 hours post-ingestion), five crops were homogenized individually using a tissue grinder and bacterial levels (CFU/crop) were monitored using plate counts. Confocal microscopy of intact crops was used to monitor biofilm development. There was no statistical difference in cell numbers (CFU/crop) over the 48 h incubation period. Microscopy showed that upon prolonged incubation, GFP-expressing E. coli within the crop produced biofilms. This method showed greater reproducibility in studying crop bacteria level than using a live fly feeding study. But this system was not recommended to study the interaction between bacteria and the crop of housefly.

Understanding the composition of camel milk coupled with studying the effects of thermal and non-thermal treatments on its components and bacterial inactivation were the general objectives of this dissertation. In the first study (Chapter 2), the gross composition of camel milk including milk protein, fat, casein, total solids, lactose, ash, and mineral content were analyzed. In addition, fatty acid profile, amino acid profile, protein fractions, and volatile compounds were evaluated as well. Our results revealed that camel milk has its unique nutrients profile. These findings make it easier for the researchers and consumers to understand some of the nutritional attributes of camel milk.The impact of non-thermal ultrasound treatment (900 W, 20 kHz, 100% power level) on some milk-borne microorganisms and the components of camel milk was studied in Chapter3. We reported that continuous ultrasound processing was efficient in inactivating Escherichia coli (E.coli) O157: H7 and Salmonella Typhimurium (S. Typhimurium) in camel milk without detrimental effects on milk fatty acids profile, lipid peroxides, and protein fractions except for some changes in milk volatile compounds (VC). In Chapter 4, another non-thermal technique, ultraviolet-C (UV-C) light, was applied to camel milk to study the effects of different UV-C light doses on the viability of E. coli O157:H7 and S. Typhimurium and the chemical changes to milk components. The main findings of this study were: (i) UV-C treatment at a dose of 12.45 mJ/cm2 resulted in only 3.9-log10 for both bacterial strains which did not meet the Food and Drug Administration (FDA) requirements for the 5-log pathogen reduction; (ii) the UV-C treatment at the above dose, had limited effects on camel milk components. Thermal pasteurization of milk was first introduced to prevent milk-borne infectious diseases, however, its effects on camel milk components and quality are still unknown. Therefore, in Chapter 5, we investigated the efficacy of three previously reported thermal methods: PAST-1 (65ºC/30 min), PAST-2 (72ºC/5 min), and PAST-3 (80ºC/5 min) on bacterial inactivation and some camel milk components such as the fatty acid profile, lipid peroxidation, VC, and milk protein fractions. Complete elimination (6 log10 CFU/ml reduction) of E. coli O157: H7 was achieved using all pasteurization methods, however, only 3.4 log10 CFU/ml reduction of the total viable counts was reported using PAST-1 and PAST-3 methods. We also reported that the PAST-1 and PAST-3 methods did not affect the chemical composition of camel milk. In conclusion, we assessed the main components of camel milk along with the amino fatty acid profile, acid profile, volatile compounds, and protein fractions. Thermal methods were more effective than the non-thermal methods in terms of microbial inactivation and most camel milk components were not significantly influenced by thermal and non-thermal methods.