Previous studies have suggested that iron PRBs, receiving high concentrations of inorganic constituents in groundwater, may experience passivation because of the accumulation of inorganic precipitates. In an iron PRB containing more highly reactive material, even though the initial contaminant removal rate is faster than for less reactive material, a faster migration of the contaminant removal front may occur due to the greater reactivity loss, caused by faster accumulation of secondary precipitates. In contrast, an iron PRB containing less reactive material may show a slower accumulation of precipitates, and thus will show a slower migration of the contaminant removal front over time. Thus, it is hypothesized that an iron material having moderate initial reactivity may be more advantageous than material having a higher reactivity in terms of long-term performance. The objective of this study was to test this hypothesis by evaluating the changes of the reactivities of different iron materials in the presence of dissolved CaCO₃. <br /><br /> Four different iron materials (Connelly, G-M, Ispat and Peerless) were selected for the column experiments. The changes in reactivities of the iron and formation of secondary precipitates over time were assessed, primarily by the iron corrosion rates, calculated from the hydrogen gas generation rates, by the cis-DCE removal rates and by the alkalinity profiles. The accumulation of precipitates in the four columns caused passivation of the iron. The passivation of the iron in turn resulted in migration of the mineral precipitation fronts as well as profiles of cis-DCE, TCE, VC, alkalinity, Eh, pH, and chloride. Connelly and G-M had longer periods of operation than Ispat and Peerless and thus their performance was the primary test of the hypothesis. G-M iron, which had the higher initial corrosion rate, compared to Connelly, showed a faster accumulation of precipitates near the influent end. The difference in accumulated precipitates resulted in a difference in the leading edge of the organic profiles and a significant difference in the pattern of passivation, indicating a faster passivation in the region near the influent end for G-M. <br /><br /> Model simulations were performed using the same fitting parameters but with different initial corrosion rate constants to further test the hypothesis. The model provided a reasonable representation of changing reactivities of the columns, being consistent with the observed data. In the simulation for long-term prediction, the cases of higher corrosion rates showed earlier breakthroughs and steeper curves than those of lower corrosion rates. Also, the predictions showed greater porosity loss for the case of higher corrosion rate. Thus, long-term predictions support the hypothesis. Accurate determination of model parameters such as cis-DCE degradation rate constants and iron corrosion rates are required for better predictions of long-term performance.

<p>Ssu72 is a protein phosphatase that selectively targets phosphorylated serine residues at the 5th position (pS5) in the heptad repeats of the C-terminal domain (CTD) of RNA polymerase II, in order to regulate the CTD-mediated coupling between eukaryotic transcription and co-transcriptional events. The biological importance of Ssu72 is underscored by (1) the requirement of its activity for viability in yeast, and (2) the numerous phenotypes - affecting all three stages of the transcription cycle - that result from its mutation in yeast. Despite limited homology to the low molecular weight (LMW) subclass of protein tyrosine phosphatases (PTPs), several lines of evidence suggest that Ssu72 represents the founding member of a new class of enzymes, including its unique substrate specificity and an in vivo connection with the activity of proline isomerase Ess1.</p><p>The main focus of this thesis has been to structurally and kinetically characterize Ssu72, in order to define its relation to known enzyme families, to provide biochemical explanations for extant in vivo observations, and to allow future structure-guided investigations of its role in coordinating transcription with co-transcriptional events. To this end, we solved the structure of Ssu72 in complex with its pS5 CTD substrate, revealing an enzyme fold with unique structural features and a surprising substrate conformation with the pS5-P6 motif of the CTD adopting the cis configuration. Together with kinetic assays, the structure provides a new interpretation of the role of proline isomers in regulating the CTD phosphorylation state, with broad implications for CTD biology.</p><p>The second goal of this thesis has been to develop new methods for NMR studies of large proteins, which present unique challenges to conventional methods, including fast signal decay and severe signal degeneracy. The first of these new methods, the `just-in-time' HN(CA)CO, improves the sensitivity of a common backbone assignment experiment. The next two methods, the 4-D diagonal-suppressed TROSY-NOESY-TROSY and the 4-D time-shared NOESY, were designed for use with sparse sampling techniques that allow the acquisition of high-resolution, high-dimensionality datasets. These efforts culminate with global fold calculations for large proteins, including the 23 kDa Ssu72, with accurate and unambiguous automated assignment of NOE crosspeaks. We expect that the methods presented here will be particularly useful as the NMR community continues to push toward higher molecular weight targets.</p> / Dissertation

By using Al interlayer to separate Cu and In, but Al is very easy to be oxidized by air. For avoiding that, using In layer can achieve that goal. And using Al interlayer can reduce the roughness of the CIS surface. The other idea is to substitute Al by Sb. In RTA selenzation process, the roughness of the CIS surface by with Sb interlayer is much smoother than using Al interlayer. And the grain with Sb interlayer is more compact (mean grain size is more than 1£gm). The composition test of CIS is measured by EPMA and EDS of TEM. In EPMA measurement, the composition of CIS by using Sb interlayer is more uniform (standard deviation is less than 1 atomic percent), and the composition of CIS by using Al interlayer is less uniform (standard deviation is 1 to 2 atomic percent). In these experiments, the assumption of composition of CIS is Cu/In=1.05, CIS with Al interlayer is Cu/In=1.05, CIS with Sb interlayer is Cu/In=0.90, and the results are 1.05, 1.05, and 0.89. The assumption is very close to the result. In EDS of TEM measurement, the results are the same as the result of paper (composition is different everywhere) and the standard deviation are bigger than 1 atomic percent, but the mean composition is similar to EPMA.

In this paper, the heuristic rules are proposed to derive the rephasing strategy of laterals and distribution transformers to improve the three phase unbalance of distribution systems. The distribution feeder network has been obtained by retrieving the attribute data of distribution components from the database of outage management system (OMS) in Taipower. The topology process and node reduction have also been executed to identify the network configuration and to prepare the input data for load flow analysis. With the monthly energy consumption of customers served by each transformer, which has been retrieved from the Customer Information System (CIS), the hourly loading of each distribution transformer can be derived. By performing the three phase load flow analysis, the three phase currents and neutral current of each primary trunk line section and each lateral can be calculated. The heuristic rule is employed to determine the phase adjustment strategy laterals and distribution transformers for rephasing to achieve three phase balancing. In order to demonstrate the effectiveness of the proposed methodology for three phase balancing, two practical distribution feeders in Taipower Fengshan District are selected for simulation. After rephasing the distribution transformers and laterals proposed by this paper, the three phase currents and netural of the test feeders have been collected. By companing to the neutral current before rephasing, it is found that the neutral current of test feeders have been reduced significantly and there phase balancing has been obtained by executing the proposed strategy derived using the heuristic rule.

In the past few years, cytoplasmic processing bodies (P-Bodies) have been identified in eukaryotic cells. P-bodies have roles in translational repression, mRNA storage, mRNA decay and are conserved cytoplasmic aggregations of non-translating mRNAs in conjunction with translation repression and mRNA degradation factors. In this work, I, in collaboration with others provide evidence for a new biological role for P-bodies in viral life cycles. This work can be summarized thus:In a collaborative effort, I have identified connections between retrovirallike transposon life cycles and P-bodies. For example, genetic evidence in yeast indicates that key proteins within P-bodies are required for the life cycles of the Ty1 and Ty3 retrotransposons. Moreover, Ty3 genomic RNA (gRNA) as well as viral structural proteins accumulate in P-bodies, suggesting that P-bodies may serve as sites of viral assembly.Second, I have shown, with assistance of collaborators, that the positivestrand RNA virus, Brome Mosaic Virus (BMV) gRNA accumulates in P-bodies Moreover, viral RNA dependent RNA polymerase (RdRp) colocalizes with and co-immunoprecipitates with the P-body protein Lsm1p, suggesting that P-bodies may participate in viral replication. Remarkably, the accumulation BMV gRNA in P-bodies is dependent on cis-elements that have been demonstrated to play critical roles in viral RNA replication.The identification of P-bodies as sites of accumulation of viral gRNA and viral proteins of both retro-virus like elements and positive-stranded RNA viruses, expands the list of important biological roles played by P-bodies. Since P-body proteins and structure are highly conserved, these findings imply that Pbodies will be important for other RNA viruses.

The purpose of this study was to investigate coaches’ perspectives on the personal development of student-athletes through interuniversity sport participation. More specifically, the ways in which coaches understand and facilitate athletes’ personal development were explored. Eight semi-structured interviews were conducted with male and female head coaches of Canadian Interuniversity Sport (CIS) programs. A qualitative approach, utilizing an inductive analysis of the data revealed: coaches’ difficulty in defining personal development and articulating the ways in which they facilitate opportunities for athletes’ personal development through sport; a lack of clarity of the methods used to measure athletes’ personal development; and the ensuing ramifications of university sport model reviews which are moving towards a high performance model of sport on athletes’ personal development. Findings from this study contribute knowledge and understanding of a previously little studied phenomenon – the personal development of student-athletes – and the perspectives from a relatively un-explored population, university head coaches.

Small RNAs (sRNAs), circa 21-26nt RNA molecules, are a novel class of regulatory molecules that influence many aspects of plant biology. The first objective of this thesis was to utilize computational approaches both to investigate how microRNAs (miRNAs), a type of sRNA, as a class affect their target transcripts’ accumulation and to identify novel miRNAs in Arabidopsis thaliana. The second objective of this thesis was to examine the regulation of protein coding (PC) cis natural antisense transcripts (cis-NATs), which have the potential to make double stranded RNA. Computational analysis of the expression of miRNA-regulated genes demonstrated that the transcriptomes of the inflorescences of plants defective in miRNA biogenesis were similar to normal leaf tissues and dissimilar to normal pollen and seed. Thus, miRNAs cause the plant transcriptome to shift from a vegetative to reproductive state. Known miRNA targets fail to explain miRNA-defective mutant transcriptome patterns. Novel computational approaches were used to discover five new mature miRNAs. Interestingly, two miRNAs have different functions but are encoded by perfect complements of the same precursor molecule. Genome-wide analysis of cis-NAT abundances revealed that protein coding (PC) cis-NATs tend to be co-expressed, broadly expressed, and highly expressed across diverse abiotic stress conditions. These expression patterns were negatively associated with sRNAs because sRNAs were under-represented within PC cis-NATs compared to PC non-cis-NATs. sRNAs also mapped to cis-NATs and non-cis-NATs at similar frequencies in mutants defective in nat-siRNA biogenesis relative to other genotypes. We suggest a common euchromatin environment and possibly antisense RNA stabilization of mRNA transcripts may contribute to the high level, breadth, and co-expression of cis-NATs. However, cis-NATs are correlated less frequently than expected, and cis-NAT transcript abundances often differ more than expected. In addition, sRNAs matched PC cis-NATs relative to PC non-cis-NATs more frequently in abiotic stress conditions than in control conditions. Thus, although sRNAs do not have a widespread role in regulating cis-NATs, sRNAs may have a focused role in regulating cis-NAT transcript abundances. / PhD thesis / NSERC

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The purpose of this study was to investigate coaches’ perspectives on the personal development of student-athletes through interuniversity sport participation. More specifically, the ways in which coaches understand and facilitate athletes’ personal development were explored. Eight semi-structured interviews were conducted with male and female head coaches of Canadian Interuniversity Sport (CIS) programs. A qualitative approach, utilizing an inductive analysis of the data revealed: coaches’ difficulty in defining personal development and articulating the ways in which they facilitate opportunities for athletes’ personal development through sport; a lack of clarity of the methods used to measure athletes’ personal development; and the ensuing ramifications of university sport model reviews which are moving towards a high performance model of sport on athletes’ personal development. Findings from this study contribute knowledge and understanding of a previously little studied phenomenon – the personal development of student-athletes – and the perspectives from a relatively un-explored population, university head coaches.

Bloodstream trypanosomes initiate differentiation to procyclic forms in response to a citrate/ cis-aconitate (CCA) signal. A cell line was previously selected (“defective in differentiation-clone 1”; DiD1) that was unable to differentiate to procyclic forms (Tasker et al. (2000)). Additionally, expression profiling of this line in comparison to the parental line by macroarray hybridisation identified two differentially-expressed transcripts from an 8 gene cluster of highly homologous genes we named PAD genes (Proteins Associated with Differentiation). Members of this family show distinct expression profiles throughout the trypanosome lifecycle at both the mRNA and protein level, and are localised to the cell surface membrane of the cell. At least 1 member of the family (PAD1) shows stumpy form specific RNA and protein expression, representing the first useful molecular marker for this stage, and exhibits biochemical specificity for citrate. Additionally, another member of this family (PAD2) is upregulated in response to low temperature, a condition reported to cause hypersensitivity to CCA. Finally, RNAi mediated ablation of the PAD gene transcripts compromised the capacity of stumpy form trypanosomes to differentiate to the procyclic form in response to CCA. These combined expression, cytological, reverse-genetic and biochemical data make PAD proteins excellent candidates for recognition of the signal to initiate differentiation in response to CCA.