The outlook for Nile crocodiles in the Olifants River does not look optimistic. Since the increase in capacity of the Loskop and Flag Boshielo Dams, the crocodile population was left with no basking or nesting sites and has declined over the past 30 years. Shortly after the Massingire Dam in Moçambique filled to full capacity an estimated 160 crocodiles died in the Olifants River Gorge, a couple of kilometres upstream from the dam. The Olifants River is acknowledged by many experts as one of the most polluted rivers in South Africa and acid mine drainage, industrial pollution and untreated sewage in the river are all contributing to the poor water quality of the river. Further, the Department of Water Affairs and Forestry acknowledge that water demand already exceeds their capacity to supply and that the situation will worsen considerably in the near future. Aerial surveys of Nile crocodiles in the Olifants River was carried out during December 2005 and November 2009. An average total population of 714 Nile crocodiles were counted and corrected to an estimated 1140 individual crocodiles to eliminate the effects of undercounting. The Kruger National Park and specifically the area of the Olifants River Gorge was found to be one of the preferred habitat areas for crocodiles in the Olifants River as was the Flag Boshielo Dam, the area between the Blyde River and the western boundary of the Kruger National Park and the Olifants River between the Loskop Dam and the Flag Boshielo Dam. Repeated nesting in areas such as the Kruger National Park, the Flag Boshielo Dam and the Olifants River between the Loskop Dam and the Flag Boshielo Dam confirmed that these areas are critically important to the nesting success of Nile crocodiles in the Olifants River. The Elands River was confirmed as an important refuge area for Nile crocodiles in the Groblersdal-Flag Boshielo Dam area of the Olifants River. Surveys revealed an estimated total of only 15 crocodiles in the Loskop Dam and confirmed that no crocodiles in the large (2.1 - 4.0m TL) and very large size class (>4.0m TL) are currently present in the population. Blood biochemistry results indicate that the Olifants River Nile crocodile population probably suffers from chronic inflammation (especially in the Loskop Dam and Olifants River Gorge populations), infectious disease (particularly in the Loskop Dam population but all other sites also showed elevated values), possible inadequate diet and malnutrition (especially during the pansteatitis outbreak of August/September 2008) and are suffering serious immune problems in the Olifants River Gorge. A conservation and management plan is suggested which identifies threats to the continued existence of a viable Nile crocodile population in the Olifants River. Finally, it is suggested that the conservation status and risk of extinction of Nile crocodiles in the Olifants River be upgraded to the Endangered category since it currently complies to the following criteria; EN A2abce; C2a(i) published in the IUCN Red List Categories and Criteria Version 3.1 (IUCN, 2001). / Thesis (PhD)--University of Pretoria, 2011. / Centre for Wildlife Management / unrestricted

Thesis (M.Sc. (Zoology)) --University of Limpopo, 2014 / Contamination of aquatic ecosystems by agricultural and mining activities, as well as by industrial discharges and urbanization in the catchment of the South African river systems has been the cause of increasing public concern. These activities may result in water pollution. One such river is the Olifants River System in Mpumalanga and Limpopo provinces which is highly impacted. The main aim of the study was to assess the impact of the water and sediment quality on the health of Clarias gariepinus and Labeo rosae and human risk when the fish is consumed at the Phalaborwa Barrage in the Lower Olifants River, Limpopo Province. This was achieved by assessing the water and sediment quality of the barrage at the three sampling sites; assessing the condition of the fish and the fish parasites by applying the fish HAI (Health Assessment Index) and PI (Parasite Index); determining the bioaccumulation of selected metals in the muscle tissue of the two fish species; and to determine the Human health risk factor upon consumption of fish contaminated with metals at the barrage. Ten fish from each fish species were collected seasonally at each site using gill nets of different mesh sizes. Standards methods were followed when testing selected water and sediment constituents. For water quality sampling, the water samples were collected over four seasons (autumn, winter, spring and summer) at three sites (inflow, wall and below wall) from April 2010 to January 2011. Sediment samples were also collected using a Friedlinger mudgrab (225cm3) at the three sites during winter and summer. Fish hosts were examined for mobile ectoparasites, weighed and measured. Blood samples were drawn and skin smears were made. Fish were killed, dissected and all external and internal organs were examined as prescribed in the fish health assessment index. The condition factor was determined for each fish population. All parasites were collected, fixed and preserved using standard methods. The highest water temperature (28.5 ºC) was in spring and lowest in winter (18 ºC). Overall pH was in an alkaline condition as it ranged from 7.4 to 8.7. Most water quality parameters were recorded at higher concentration in spring which includes; water temperature, pH, conductivity, salinity, TDS, alkalinity, and turbidity. Major ions (cations and anions) recorded were all within the TWQR. Sulphates concentrations were all within the TWQR. Calcium concentration levels exceeded the typical concentration limit in spring but the levels were still within the TWQR for domestic use. Nutrients levels (nitrate, nitrite, sulphate) were very low which indicate oligotrophic conditions. Highest total nitrogen was recorded in spring which is an indicative of eutrophic conditions. Highest phosphorous concentrations were recorded in winter, spring and summer which are an indicative of eutrophic conditions. Noticeable elevated levels were recorded at the inflow in summer which is an indicative of hypertrophic conditions. The results of the metals concentrations analysed demonstrated that metals within the barrage are present in trace amounts in the water. Analysis of the metal concentrations in water, sediment and fish muscle tissue revealed that the sediment contained the highest concentrations of metals followed by fish tissue and then the water. Metals that were detected in the water column includes; aluminium, antimony, arsenic, barium, boron, iron, manganese, selenium, strontium and tin. Metals that were detected at concentrations above the TWQR for aquatic ecosystem were; aluminium, antimony and selenium. Arsenic, cadmium and chromium were recorded at concentrations above the detection limit as suggested by CCME. Zinc concentrations were recorded at levels below suggested detection limit. Aluminium, barium, boron, cadmium, chromium, manganese, selenium and strontium were all detected at elevated levels in water and above the TWQR. Among the metals recorded in the water column, significant seasonal variations in concentration were found for aluminium, barium, boron, lead selenium and strontium whereas only boron showed a significant variation between sites. In comparison to the metals concentrations accumulated in the muscle tissue of both fish species. It was noted that C.gariepinus accumulated more metals than L. rosae; however L. rosae accumulated more metals at elevated concentrations than C. gariepinus. The metals that were accumulated at elevated levels in C. gariepinus were barium, boron, zinc and selenium. In L. rosae, iron, aluminium, strontium, titanium, vanadium and arsenic accumulated at elevated levels. All these metals pose a high risk to fish and human’s health. The highest population HAI was recorded in summer for both fish species. The lowest HAI value was recorded in autumn for both fish species. Although a high HAI population value was recorded higher in summer for both fish species, in general both fish species from the barrage were in a normal condition. A high number of ectoparasites were recorded in L. rosae than in C. gariepinus while high numbers of endoparasites were recorded in C. gariepinus than L. rosae. The dominating ectoparasites for both species were from the class monogenea. Although the prevalence for Contracaecum sp. in C. gariepinus was 100% in all season, it did not influence the condition of the host. None of the parasites identified from both fish species neither reached alarmingly infection levels nor caused any visible damage to the host. In conclusion, the water quality at the Phalaborwa Barrage is slightly polluted based on the water quality parameter(phosphorous) presence and recorded of some metals at the inflow that were recorded at elevated levels above the TWQR. Further recommendations are refereed such as extension of this study to all tributaries and to include other fish species in addition to constant monitoring of the impoundment.

Thesis (MSc. (Zoology)) -- University of Limpopo, 2014 / The Olifants River is presently one of the most threatened river systems in South Africa. The Upper and Middle catchments are heavily impacted by anthropogenic activities, however little is known of the status of the river in the Lower catchment in the Limpopo Province. Thus the aim of this study was to evaluate the impact of water quality on the health of Oreochromis mossambicus and Schilbe intermedius at the Phalaborwa Barrage. This was achieved through assessing the water (seasonally) and sediment quality (bi-annually) at three sites in the Phalaborwa Barrage (inflow, middle and the wall). Ten specimens of each of the two selected fish species were seasonally collected using gill nets of different mesh sizes from May 2010 to January 2011. The water, sediment and the dorsal muscle tissues from both fish species were analysed for selected metals at an accredited laboratory by means of ICP-OES spectrometry and the human health risk factor upon consumption of fish contaminated with metals was assessed. Fish health was determined at the field laboratory by applying the HAI, PI and IPI. In addition, the condition factor (CF) was determined for the selected fish species during all seasons. All water constituents with the exception of turbidity during spring (wall), anions (Cl, F and SO4) and cations (Ca, K, Mg and Na) fell within the target water quality range (TWQR) for aquatic ecosystems throughout the study. Inorganic nitrogen concentrations showed eutrophic (spring) and oligotrophic conditions (autumn, winter and summer), while phosphorus indicated eutrophic (autumn, winter and spring) and hypertrophic (summer) conditions throughout the study. There was no significant difference in anions (F=0.07; df=3; p=0.97), cations (F=0.57; df=3; p=0.64) and nutrients (F=0.79; df=3; p=0.56) detected in water. The metals that were detectable in the water samples were: Al, Fe, Sn, B, Sr, Se, Ba, Mn, Sb and As, while in sediment all metals (Fe, Al, Ti, Mn, Ba, B, Zn, Ag, V, Cr, Ni, Sr, Sn, Co, Cu, Cd, Pb, As and Sb) were detected with the exception of Se. The average metal concentrations detected above the TWQR are; Al, Fe, Se, Sn, Sb and As, in the sediment only Cr and Cd were above suggested quality guidelines. There was no significant difference in metals detected in water (F=0.05; i df=3; p=0.98) and sediment (F=1.62; df=1; p=0.21). Higher HAI values were recorded for S. intermedius than O. mossambicus, indicating that O. mossambicus was in better health than S. intermedius. For S. intermedius, parasites contributed the most to the total HAI followed by abnormal liver conditions, haematocrit levels (internal variables) and abnormal gills (external variable). While for O. mossambicus, parasites, liver, haematocrit (internal variables), gills, eyes, fins and skin (external variables) contributed to the HAI values. There was no significant difference in HAI values for O. mossambicus (F=1.9; df=3; p=0.15) and S. intermedius (F=2.58; df=3; p=0.66) throughout the study. The PI and IPI for ectoparasites for both fish species, were higher than the PI for endoparasites. There was a significant difference for PI values of O. mossambicus (F=0.07; df=3; p=0.041) and S. intermedius (F=3.65; df=3; p=0.019) during the study. Oreochromis mossambicus had higher CF values than S. intermedius and both fish species had values that indicated good fish. Metals that were detectable in O. mossambicus muscle tissue included: Ba, B, Zn, Fe, Sr, Al, Mn, Cr, Ag, Pb, Ni, Cu, Se, V, Sb, Ti, Sn and Co, while for S. intermedius Ba, B, Zn, Fe, Al, Cr, Sr, Mn, Cu, As, Pb, Se, Sn, Ag, Ti, Ni, Sb and Co were recorded. There was no significant difference in bioaccumulation levels between the two fish species (F=1.412; df=3; p=0.250). The human health risk assessment indicated that fish muscle tissues are unsuitable for continuous (weekly/daily) consumption. As some carcinogenic metals i.e. Pb, Cr and Sb for O. mossambicus and Pb, As and Cr for S. intermedius were detected at HQ levels of more than 50 times the recommended value of one. In conclusion, the Phalaborwa Barrage is impacted by metals (Al, Fe, Se, Sn, Sb and As) and occasionally with nutrients. The water and sediment quality and metal bioaccumulation have confirmed the latter statement and to a lesser extent the HAI, PI and IPI. The human risk assessment done indicated that continuous consumption of fish by humans, especially O. mossambicus may have adverse effects on the health of humans.

M.Sc. / The catchment area of the Olifants River has, over a number of years, been exposed to extensive mining, agriculture and urbanisation activities in the Witbank-Middelburg and Phalaborwa regions which has largely contributed to the deterioration of water quality. Of major concern is the influence anthropogenic activities have on the aquatic ecosystem of the Olifants River within the Kruger National Park and how me health of fish residing In these waters is affected. To determine fish health, a biological monitoring method, the Health Assessment Index (H41), was tested for the first time In South Africa. Four surveys were conducted at Mamba and Balule In the Olifants River, Kruger National Park during 1994 (February, May, July and November). An additional survey was conducted in February 1995 at Loskop Dam. Samples of water and sediment were taken for analysis of metals and physical and chemical water parameters. A maximum of 20 Clarias gariepinus fish were sampled at each location. Evaluation of the fish was done according to guidelines set in the HAI and parasite population composition (prevalence, abundance, mean intensity) was determined. Organ and tissue samples including gills, liver, muscle and skin were analysed for the bioaccumulation of chromium, copper, Iron, manganese, nickel, lead, strontium and zinc, using atomic absorption spectrophotomeby. Metal concentrations in the water at Mamba and Balule were within guideline limits, whereas concentrations at Loskop Dam were above guidelines. As reflected by the application of the Aquatic toxicity Index, Loskop Dam presented with the poorest water quality followed by Mamba then Balule. It was found that certain physical and chemical variables namely fluoride, potassium, sulphate and total dissolved solids concentrations at Mamba and Balule were relatively high, particularly during drier months. Metals accumulated in organs and tissues, with the highest concentrations In the gills followed by the liver, skin and muscle. The discriminant analysis, utilising metal bloaccumulation, discriminates between water quality at Mamba and Balule, revealing a 100 % classification probability for each survey. Values obtained In the application of the HAI indicated that variables with good predictor accuracy were plasma protein, all parasites, endoparasites, liver, white blood cell counts, ectoparasites, skin, fins and gills. The discriminant function for the HAI generally Indicated variables similar to those exhibiting high predictor accuracy. The discriminant function showed relatively low classification probability for each survey. In case 1, where separate endo- and ectoparasite variables were Included in the determination of me discriminant function, probability for me entire study ranged between 47.5 % and 84.2 %. In case 2, where endo- and ectoparasite variables were given a refined score rating system, probability ranged between 62.5 % and 100 %. The low classification probability Indicates either the Importance of repetitive testing for this technique or a total departure from it. Results showed that fish populations with higher HAI values are found in water of poorer quality (Mamba), while healthier fish populations i.e. with lower RAI values are found In water of better quality (Balule). Parasite data shows a similar tendency by indicating that ectoparasites are abundant in water of higher quality, while endoparasftes increase in water of poorer quality. The HAI reflects the condition of fish populations in relation to their aquatic environment, therefore, the HA/ gives an indication of water quality and should be used as a first level screening tool. If complemented by a parasite survey, distinguishing between endoand ectoparasites, the results from the HAI will be enhanced.

M.Sc. / Hydrocynus vittatus, commonly known as the tigerfish, plays an important role in riverine ecology. It is a top predator which roams the open waters of most larger river systems in southern Africa. Their presence in a freshwater ecosystem has a dramatic impact on the fish community structure. It is known that dams and weirs have a negative effect on the migration of the tigerfish. It is also evident that tigerfish do not occur in certain areas in some of the rivers where they have been present historically. The Olifants and Letaba Rivers in the Kruger National Park (KNP) are two of a few rivers within South Africa where tigerfish do occur. The KNP represents the edge of the most southern distribution of tigerfish in southern Africa. It was therefore expected that the tigerfish do not function optimal in the Olifants and Letaba Rivers as they are subjected to waters with high concentrations of silt and low flow which influences migration and successful breeding. Breeding migrations does however take place during the summer months after which the tigerfish returns to the Massingire Dam in Mozambique to avoid the colder winter temperatures in the rivers. Gonad development coincide with the yearly summer rainfall patterns. A deviation of the expected 1:1 male:female sex ratio to favour the males was experienced in both rivers, which may be the result of over population. Females were found to grow to a larger size than the males and were extremely fecund. Although H. vittatus is believed to be mainly piscivorous, other food items such as invertebrates, played an important role in the diet of small and large tigerfish in both the Olifants and Letaba Rivers. Invertebrates were mostly preyed upon which implies that optimal feeding conditions for the tigerfish does not prevail in these systems and that they have to adapt to satisfy their feeding requirements. Tigerfish is more abundant in the Olifants than in the Letaba River. The overall growth performance or phi prime (4)) values for H. vittatus in the Olifants River was determined and compares well to the overall growth performance of tigerfish in the Okavango River and Lake Kariba. However the maximum length calculated for tigerfish in the Olifants River (Lco = 52.40 cm ) is smaller than the Lco values (56.06 cm) for the Okavango River. The mortality rate of tigerfish in the Olifants River exceeds those in the Letaba River which means that the life expectancy is longer in the Letaba as opposed to the Olifants River. Successful artificial spawning revealed some of the secrets of the reproduction strategy of this species. Tigerfish has semi pelagic eggs, are very small (0.65 mm), negatively buoyant and slightly adhesive for bentic and epibiotic incubation, and it is expected that tigerfish would spawn in open water, on a sandy substrate in the vicinity of aquatic vegetation. First hatching took place at 22h 30 min after fertilization. Vertical movement of the larvae lasts for two days, which allows for downstream movement and dispersement of the larvae. It was found that tigerfish replace their teeth on a regular basis as they grow larger. Transition from conical to functional dentition takes place 45 days after hatching. Replacement of sets of teeth occurs during all phases of its lifespan. It is a quick proses of three to six days during which all teeth are replaced in both the upper and lower jaws.

The first of a series of mass mortalities of Nile crocodiles in the Olifants and Letaba rivers in the Kruger National Park (KNP) was reported in the winter of 2008. The present study investigated the levels and possible effects on eggshell thickness of inorganic elements and organic pollutants in Nile crocodile eggs from these rivers, and comparing them with eggs from a reference crocodile farm and a reference dam inside the KNP. The egg contents were analyzed for chlorinated organic compounds and brominated flame retardants. Eggshells and egg contents were analyzed for inorganic elements. The elemental concentrations in the eggshells and contents were low when compared with previous studies. The highest concentrations were found in the eggs from the reference crocodile farm. The eggs from the reference dam and the crocodile farm had thicker shells, and the eggs from the Olifants and Letaba rivers had thinner shells. Not all eggs in a female develop at the same rate, while eggshell formation presumably occurs at the same time for all eggs. As a result, the elemental profile of egg contents may differ between eggs of the same clutch, but less so for the shells. Weak or no associations were found between the elemental concentrations of the content and eggshells and eggshell thinning. A possible organic pollutant–induced eggshell thinning effect was found. The compounds found were not at levels that could have caused the mortalities, but may affect the sex ratios through endocrine disruption. Further studies are therefore required. / Thesis (M.Sc (Environmental Science))--North-West University, Potchefstroom Campus, 2011.

The first of a series of mass mortalities of Nile crocodiles in the Olifants and Letaba rivers in the Kruger National Park (KNP) was reported in the winter of 2008. The present study investigated the levels and possible effects on eggshell thickness of inorganic elements and organic pollutants in Nile crocodile eggs from these rivers, and comparing them with eggs from a reference crocodile farm and a reference dam inside the KNP. The egg contents were analyzed for chlorinated organic compounds and brominated flame retardants. Eggshells and egg contents were analyzed for inorganic elements. The elemental concentrations in the eggshells and contents were low when compared with previous studies. The highest concentrations were found in the eggs from the reference crocodile farm. The eggs from the reference dam and the crocodile farm had thicker shells, and the eggs from the Olifants and Letaba rivers had thinner shells. Not all eggs in a female develop at the same rate, while eggshell formation presumably occurs at the same time for all eggs. As a result, the elemental profile of egg contents may differ between eggs of the same clutch, but less so for the shells. Weak or no associations were found between the elemental concentrations of the content and eggshells and eggshell thinning. A possible organic pollutant–induced eggshell thinning effect was found. The compounds found were not at levels that could have caused the mortalities, but may affect the sex ratios through endocrine disruption. Further studies are therefore required. / Thesis (M.Sc (Environmental Science))--North-West University, Potchefstroom Campus, 2011.

Water is a crucial natural resource, indispensable to food production, life, the environment, power generation, industry, sanitation and hygiene. The presence of Organochlorine Pesticides (OCPs) in the environment is not wanted due to their negative effects on human beings and animals. As a result, there is a need to continuously monitor their presence in the environment. In this study, surface water samples were collected once a month during the dry season and during wet season from the selected five points along the Olifants River and stored at a temperature of < 50C before analysis. The OCPs were extracted with dichloromethane (DCM) using the Liquid-Liquid Extraction (LLE) method. After undertaking the sample through the clean- up process, the crude extracts obtained were put into the column chromatography and eluted with hexane, about 1.5 μL of the purified extracts were analysed by the Gas Chromatographic- Mass Spectrophotometer (GC/MS). The percentage recoveries, varied from 32- 116 % for p, p’-DDT and 4,4'-DDD respectively in triply spiked water samples. The standard deviation for most of the compounds is less than±0.04, with the exclusion of Heptachlor (±0.14). The seasonal variability of OCPs in water samples along Olifants River results show that in dry season, the Olifants River is mostly polluted at the Oxford site with (BHC-beta, Aldrin, Heptachlor-epoxide, Endosulfan-alpha and Endrin), at the Ga- Selati site with (Heptachlor-epoxide and Endrin) and at the Wolvekrans site with (Endosulfan-alpha), with Aldrin up to 834.20 ng/ L indicating the highest hazard toward the aquatic environment while in summer the Olifants River is mostly polluted at the Ga- selati site with BHC-beta and at the Waterval site with (Heptachlor and BHC-gamma) with BHC- gamma up to 560 ng/ L indicating the highest hazard toward the aquatic environment. The levels reached from the Olifants River catchment were meaningfully above the drinking water quality guidelines for organic chemical recommended by WHO, 2006 i.e. (BHC-gamma,DDT-44, Aldrin, dieldrin and Endrin are (2.0,1.0,0.03,0.03 and 0.6) respectively for the protection of the domestic use, aquatic ecology and agricultural use (irrigation and livestock watering) for compounds with local guideline values; while, the international water quality guidelines to protect the aquatic ecosystems are 0.00083 ng/mℓ (4,4’DDD), 0.00059 ng/mL (4,4’DDE), (4,4’DDT), 0.00021 ng/mL (heptachlor), 0.0092 ng/mℓ (α-HCH), 0.0186 ng/mL (γ- HCH), and chronic values are 0.056 ng/mL (ENDO I and II) and 0.0023 ng/mL endrin) (USEPA, 2002). Levels detected were significantly higher than some research studies conducted up to now in South African aquatic environments. These results confirm the contamination of the Olifants River catchment by the OCPs. / Water and Sanitation / M. Sc. (Environmental Science)

Thesis (M. Sc. (Geography)) -- University of Limpopo, 2021 / Acid Mine Drainage (AMD) is the acidic water emanating from the mine tailing dams into the surrounding environment. AMD is regarded as a major environmental threat associated with mining. The lower Olifants River in the Kruger National Park (KNP) is considered an environmentally sensitive area, which exhibits high levels of aquatic ecosystems and supports a variety of terrestrial ecosystems within and around the KNP. The Phalaborwa mining industries have been discharging the acid mine drainage contaminated-water into the Ga-Selati River, a tributary to the Olifants River. Although the impacts in the upper Olifants River catchment have been well documented, it was the amount of AMD witnessed at KNP and the dying of fish within the lower Olifants River that raised issues of concerns. Hence, the study investigated the impact of acid mine drainage on water quality of the lower Olifants River, modelled the distribution of the dissolved heavy metals in the stream, and evaluated the applied mine wastewater management strategies at Phalaborwa mining industries. In this study, water samples were collected seasonally (winter, spring, and summer) from 2019 to 2020, and the analytical methods and procedures were optimized for the determination of selected elements in the water samples. During the study, ion chromatography (IC) was used to detect chloride (Cl), sulphate (SO4 - ), nitrate (NO3), and fluoride (F), Inductively Coupled Plasma Optical Emission Spectroscopy (ICP-OES) was used to detect pH, turbidity, electrical conductivity (EC), total dissolved solids (TDS), magnesium (Mg), manganese (Mn), sodium (Na), potassium (K), aluminium (Al) and calcium (Ca). Modelling of the distribution of dissolved heavy metals was performed using the inverse distance weighted (IDW) interpolation technique available in ArcGIS 10.8 software. The range of pH across four sampling sites was between 7.77 and 9.11, indicating an alkaline pH. The concentration of measured parameters elevated downstream points with some exceeding the target water quality range (TWQR) for aquatic ecosystems. The elevated concentration of SO4 - at sites 3 and 4 (downstream points) showed that the acid mine drainage is still a matter of concern at the lower Olifants River catchment. However, the GIS models showed a decreasing trend of the concentration of heavy metal towards the KNP.