Megalagrion damselflies have radiated into new breeding habitats independently at least six times in the Hawaiian archipelago, and have evolved bright body coloration numerous times. We hypothesize that these radiations are correlated with specific changes in the opsin proteins. We isolated and characterized two opsin genes from nine different Megalagrion species. The opsin phylogeny is consistent with the phylogeny based on breeding habitat preference of Megalagrion species supporting the correlation between the evolutionary changes of vision and habitat shifts. dN/dS ratios of opsin sequences show that these genes are evolving under purifying selection, though some sites of the opsin genes might be evolving under positive selection. Two terrestrial-breeding Megalagrion species show higher rates of opsin gene evolution that are correlated with a rapid transformation in their breeding habitats from aquatic to terrestrial. These results support the hypothesis that opsin gene evolution has played a role in Megalagrion radiation in Hawaii.

The filtering of light by water is contingent on depth, direction and clarity. Consequently, fish must contend with a much more variable spectral world than terrestrial species. The gene family responsible for light sensitivity, the opsins, has expanded in fish. The duplication events responsible for large fish opsin gene repertoires have been characterized as part of this thesis research. The four-eyed fish, Anableps anableps, swims at the surface with its eyes at the waterline. Among many unusual adaptations, these eyes have two pupils, one above and one below the surface, giving it simultaneous access to broad spectrum aerial light and filtered aquatic light. It also has a nine cone opsin genes including duplications in three of the four cone opsin subfamilies. In situ hybridization was used to localize opsin transcripts in the retina. My data show that A. anableps expresses SWS1, SWS2 and RH2 opsins and has broad spectral sensitivity across its entire retina. In addition, I discovered that the region of the retina exposed to aquatic light expresses LWS and is, therefore, additionally red sensitive to match the longer wavelength available in cloudy water. By comparing this pattern with its normal eyed sister species, Jenynsia onca, I found that this increased red sensitivity is accomplished through the reduction of green sensitive pigments, which in A. anableps (but not J. onca) are expressed only in the ventral region of the retina that is exposed to aerial light. / Graduate

Microbial rhodopsins are abundant membrane proteins often capable of ion transport and are found in all three domains of life. Thus, many fungi, especially phyto-associated or phyto-pathogenic ones, contain these green-light-sensing photoreceptors. Proteins that perceive other wavelengths are often well characterized in terms of their impact on fungal biology whereas little is known about the function of fungal rhodopsins. In this work, five fungal rhodopsins, UmOps1 and UmOps2 from the corn smut Ustilago maydis as well as ApOps1, ApOps2 and ApOps3 from the black yeast Aureobasidium pullulans, were characterized electrophysiologically using mammalian expression systems and the patch-clamp technique to explore their ion transport properties. The latter three were modified using a membrane trafficking cassette, termed “2.0” that consists of the lucy rho motif, two Kir2.1 Golgi apparatus trafficking signals and a Kir2.1 endoplasmic reticulum export signal, what resulted in better plasma membrane localization. Rhodopsin mutants were created to identify amino acid residues that are key players in the ion transport process. Current enhancement in the presence of weak organic acids, that was already described before for the fungal rhodopsin CarO from Fusarium fujikuroi (García-Martínez et al., 2015; Adam et al., 2018), was investigated for the U. maydis rhodopsins as well as for ApOps2 by supplementing acetate in the patch-clamp electrolyte solutions. All five rhodopsins were found to be proton pumps unidirectionally transporting protons out of the cytosol upon green-light exposure with every rhodopsin exhibiting special features or unique characteristics in terms of the photocurrents. To name just a few, UmOps1, for example, showed a striking pH-dependency with massive enhancement of pump currents in the presence of extracellular acidic pH. Moreover, especially ApOps2 and ApOps3 showed very high current densities, however, the ones of ApOps3 were impaired when exchanging intracellular sodium to cesium. Concerning the mutations, it was found, that the electron releasing group in UmOps1 seems to be involved in the striking pH effect and that the mutation of the proton donor site resulted in almost unfunctional proteins. Moreover, a conserved arginine inside ApOps2 was mutated to turn the proton pump into a channel. Regarding the effect of weak organic acids, acetate was able to induce enhanced pump currents in UmOps1 and ApOps2, but not in UmOps2. Due to the capability of current production upon light illumination, microbial rhodopsins are used in the research field of optogenetics that aims to control neuronal activity by light. ApOps2 was used to test its functionality in differentiated NG108-15 cells addressing the question whether it is a promising candidate that can be used as an optogenetic tool. Indeed, this rhodopsin could be functionally expressed in this experimental system. Furthermore, microscopic studies were done to elucidate the localization of selected rhodopsins in fungal cells. Therefore, conventional (confocal laser scanning or structured illumination microscopy) as well as novel super-resolution techniques (expansion or correlated light and electron microscopy) were used. This was done on U. maydis sporidia, the yeast-like form of this fungus, via eGFP-tagged UmOps1 or UmOps2 expressing strains. Moreover, CarO-eYFP expressing F. fujikuroi was imaged microscopically to confirm the plasma membrane and tonoplast localization (García-Martínez et al., 2015) with the help of counterstaining experiments. UmOps1 was found to reside in the plasma membrane, UmOps2 localized to the tonoplast and CarO was indeed found in both of these localizations. This work gains further insight into rhodopsin functions and paves the way for further research in terms of the biological role of rhodopsins in fungal life cycles. / Mikrobielle Rhodopsine sind häufig vorkommende Membranproteine, welche oft fähig sind, Ionen zu transportieren. Sie kommen in allen drei Domänen vor. So weisen auch Pilze – vor allem pflanzenassoziierte oder pflanzenpathogene – diese Grünlichtrezeptoren auf. Proteine, die andere Wellenlängen empfangen können, sind bereits häufig gut in Bezug auf ihren Einfluss auf die Pilzbiologie untersucht, wohingegen nur wenig über die Funktion der pilzlichen Rhodopsine bekannt ist. Hier wurden fünf Rhodopsine, UmOps1 und UmOps2 des Maisbeulenbrandes Ustilago maydis, sowie ApOps1, ApOps2 und ApOps3 des schwarzen Hefepilzes Aureobasidium pullulans bezüglich ihrer Ionentransport-Eigenschaften mit Hilfe von Säugerzelllinien und der Patch-Clamp Technik untersucht. Die drei letzteren wurden mit der „2.0“-Modifikation ausgestattet, bestehend aus dem lucy rho Motif, zwei Kir2.1 Golgiapparat Transfer- und einem Kir2.1 Endoplasmatischen Retikulum-Export-Signal, was zu einer besseren Plasmamembran-Lokalisierung der Proteine führte. Es wurden weiterhin Rhodopsin-Mutanten hergestellt um Aminosäuren zu identifizieren, welche im Ionentransport Schlüsselfunktionen einnehmen. Des Weiteren wurde der Effekt von schwachen organischen Säuren auf den Ionentransport der U. maydis Rhodopsine und auf ApOps2 mittels Supplementation der Patch-Clamp-Elektrolyten mit Acetat untersucht. Dieser Effekt wurde bereits früher für CarO aus Fusarium fujikuroi nachgewiesen (García-Martínez et al., 2015; Adam et al., 2018) und bezeichnet eine Erhöhung der lichtinduzierten Ströme durch die extrazelluläre Anwesenheit schwacher organischer Säuren. Alle fünf untersuchten Rhodopsine wurden als Grünlicht getriebene Pump-Rhodopsine identifiziert, welche Protonen unidirektional aus dem Zytosol transportieren. Hierbei zeigten die lichtinduzierten Ströme jedes Rhodopsins spezielle Eigenschaften und Merkmale. Unter anderem zeigte UmOps1 eine unerwartete pH-Abhängigkeit indem die Pumpströme bei extrazellulärem sauren pH massiv erhöht wurden. Des Weiteren zeigten sowohl ApOps2 als auch ApOps3 sehr hohe Stromdichten, wobei jedoch die von ApOps3 rapide abnahm, sobald intrazelluläres Natrium durch Caesium ersetzt wurde. Bezüglich der Rhodopsin- Mutanten konnte gezeigt werden, dass die Proton-Releasing-Group von UmOps1 wahrscheinlich in die erstaunliche pH-Abhängigkeit involviert ist und dass die Mutation des Proton-Donors zu meist nicht funktionalen Proteinen führt. Ein konserviertes Arginin in ApOps2 wurde mutiert um das Pump-Rhodopsin in einen Kanal umzuwandeln. Der Schwache-Organische-Säure-Effekt konnte für UmOps1 und ApOps2, nicht aber für UmOps2 nachgewiesen werden. Wegen ihrer Ionentransport-Eigenschaften werden mikrobielle Rhodopsine in der Optogenetik eingesetzt um neuronale Zellen mittels Lichts zu steuern. Hier wurde ApOps2 benutzt um dessen Funktionalität in ausdifferenzierten NG108-15 Zellen zu testen und ob dieses Rhodopsin ein vielversprechender Kandidat für optogenetische Anwendungen wäre. In der Tat gelang es, ApOps2 funktional in diesem Testsystem zu exprimieren. Des Weiteren wurde die Lokalisation von UmOps1 und UmOps2 in Sporidien (hefeähnliche Form von U. maydis) mittels eGFP-Label untersucht, sowie die Plasmamembran- und Tonoplast-Lokalisierung von CarO-eYFP in F. fujikuroi (García- Martínez et al., 2015) mittels Gegenfärbungen bestätigt. Hierfür wurden konventionelle (konfokale Laserraster-, sowie strukturierte Beleuchtungsmikroskopie) und auch neuartige hochaufgelöste Mikroskopie-Methoden (Expansions- und korrelative Licht- und Elektronenmikroskopie) verwendet. Es konnten hier weitere Einblicke in die Funktionen pilzlicher Rhodopsine gewonnen werden, welche den Weg für weitere Forschung in Bezug auf den Einfluss dieser Proteine auf das Leben der Pilze ebnen.

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Fireflies are some of the most captivating organisms on the planet. Because of this, they have a rich history of study, especially concerning their bioluminescent and visual behavior. Among insects, opsin copy number variation has been shown to be quite diverse. However, within the beetles, very little work on opsins has been conducted. Here we look at the visual system of fireflies (Coleoptera: Lampyridae), which offer an elegant system in which to study visual evolution as it relates to their behavior and broader ecology. They are the best-known case of a terrestrial organism that communicates through the use bioluminescence. The molecular basis for this communication is relatively simple: one gene-family (opsins) controls the detection of the signal, and one gene family (luciferase) controls the production of the signal. We use a transcriptomic approach to sample for and investigate opsin evolution in fireflies. We also present the first total evidence approach using both an extensive molecular matrix and a robust morphological matrix to reconstruct the lampyrid phylogeny. We then use this phylogeny to assess the hypothesis that adult use of bioluminescence occurred after the origin of Lampyridae. We find evidence for only two expressed opsin classes in each of the nine firefly species studied, one in the ultra-violet sensitive and one in the long-wavelength sensitive areas of the visible spectrum. Despite the need for most adult fireflies to respond to a clearly sexual and colorful visual signal (bioluminescence) to maximize fitness, their visual system is relatively simple, and does not match the trend for opsin duplication found in other insect groups. All subfamilies except for Lampyrinae are recovered as monophyletic; Pterotinae and Ototretinae are recovered within the Lampyridae. The ancestral state of adult bioluminescence is suggested to be non-bioluminescent, with at least three gains and at least three losses.

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Un contrôle précis de la maturation ovocytaire et de la ponte sont essentiels au succès de la reproduction sexuée au sein le règne animal. Ces processus sont coordonnés précisément par des signaux endocriniens et/ou environnementaux, selon les espèces, mais beaucoup reste à apprendre sur leurs régulations. Chez les cnidaires, de nombreuses méduses du groupe des hydrozoaires sont connues pour produire des gamètes en réponse à la transition nuit/jour. Pour caractériser les machineries cellulaires et moléculaires liant la réception de la lumière à l'initiation de la maturation ovocytaire, j'ai étudié la méduse hydrozoaire Clytia hemisphaerica. Mon travail de thèse s’est découpé en trois parties, chacune impliquant l'identification d'un composant moléculaire clé de ce processus.Mon étude initiale faisait partie d'une collaboration avec N. Takeda (Asamushi) et R. Deguchi (Sendai), chercheurs qui avaient, avant le début de ma thèse, identifié chez Clytia les Hormones d'Incitation de Maturation ovocytaire endogènes (MIH) comme étant des tétrapeptides de type WPRPamide, produit par clivage de deux précurseurs à neuropeptides. J'ai montré par hybridation in situ et immunofluorescence que les deux gènes précurseurs du MIH sont exprimés par un type de cellules neurosécrétrices localisées au niveau de l’ectoderme de la gonade, et que les peptides MIH sont sécrétés par ces mêmes cellules suite à une stimulation lumineuse. Cette étude a posé les bases permettant l'identification des régulateurs agissant en amont et en aval du MIH, et plus spécifiquement ceux impliqués dans la photoréception de l’ectoderme de la gonade et la réception du MIH par les ovocytes.Pour identifier le récepteur du MIH de Clytia (CheMIHR) dans les ovocytes, j'ai compilé à partir de données transcriptomiques issues de tissus de gonades, une liste de 16 protéines candidates de la famille des Récepteurs Couplés aux Protéines G (GPCR). J'ai cloné les 16 cDNAs et, utilisant une méthode de « deorphelinisation » de GPCR basée sur de la culture cellulaire (collaboration avec P. Bauknecht et G. Jékély; MPI, Tübingen), j’ai pu identifier un GPCR activée par des peptides MIH synthétiques. Sa fonction in vivo comme récepteur essentiel du MIH a été confirmée par la méthode d'édition génétique CRISPR/CAS9. La délétion ainsi produite, entraînant un déplacement du cadre de lecture au sein du gène CheMIHR, a détérioré la croissance des colonies de polypes et le comportement de ponte des méduses matures. Confirmant la fonction de CheMIHR, la maturation ovocytaire chez des mutants CheMIHR ne pouvait pas être déclenchée par la lumière ou par addition de MIH synthétiques, mais pouvait être rétablie en utilisant des analogues au cAMP, molécule connue pour agir en aval de la réception du MIH dans les ovocytes d’hydrozoaires. Des analyses phylogénétiques ont montré que Clytia MIHR est affilié à un sous-ensemble de familles de neuropeptides de bilaterians impliqués dans divers processus physiologiques, notamment la régulation de la reproduction. Des hybridations in situ sur les méduses Clytia, ont en outre montré l'expression des précurseurs de CheMIH et de CheMIHR dans des cellules neurales hors de la gonade, suggérant un rôle plus large du couple CheMIH-MIHR que la seule initiation de la maturation ovocytaire.Pour mieux comprendre la photoréception des gonades chez Clyita, j'ai montré que la ponte est sélectivement incitée par la lumière bleu-cyan, et mis en évidence, grâce à l’analyse de données de transcriptome de gonade, qu’un photopigment de la famille des Opsin (Opsin9) est hautement exprimé dans l'ectoderme. De façon saisissante, les hybridations in situ ont montré que le gène Opsin9 est exprimé dans les mêmes cellules sécrétant le MIH. L'introduction d'une mutation de changement de cadre de lecture dans le gène Opsin9 via la technologie CRISPR/Cas9 a empêché la maturation ovocytaire et la ponte des méduses mutantes en réponse à la lumière... / Tight control of oocyte maturation and of gamete release is essential for successful sexual reproduction in the animal kingdom. These processes are precisely coordinated by endocrine and/or environmental cues, depending on the species, but much remains to be learned about their regulation. Within the Cnidaria, many hydrozoan jellyfish are known to spawn mature gametes following dark/light transitions. To characterise the cellular and molecular machinery linking light reception and oocyte maturation initiation, I have studied the hydrozoan jellyfish Clytia hemisphaerica. My thesis work had three parts, each involving the identification of a key molecular component of this process.My initial study was part of a collaboration with N. Takeda (Asamushi) and R. Deguchi (Sendai), who identified the endogenous oocyte Maturation-Inducing Hormones (MIH) in Clytia as WPRPamide-related tetrapeptides, generated by cleavage of two neuropeptide precursors. I showed by in situ hybridization and immunofluorescence that Clytia MIH is produced by neurosecretory cells of the gonad ectoderm that co-express the two precursor genes, and that it is secreted upon light stimulation. This study paved the way for identification of regulators acting upstream and downstream of MIH release in the gonads, specifically the ones involved in photoreception in the gonad ectoderm, and in MIH reception by the oocytes. To identify the Clytia MIH receptor (CheMIHR) in the oocytes, I compiled a shortlist of 16 candidate G protein-coupled receptors (GPCRs) from gonad transcriptome data. I cloned all 16 cDNAs and, using a cell culture-based "GPCR deorphanization" assay (collaboration with P. Bauknecht and G. Jékély; MPI, Tübingen), identified one GPCR that was activated by synthetic MIH peptides. Its in vivo function as the essential MIH receptor was confirmed by CRISPR/Cas9 gene editing. Introduction of a frame-shift mutation in the CheMIHR gene impaired growth of Clytia polyp colonies and also the spawning behaviour of mature medusae. Confirming the function of CheMIHR, oocyte maturation in CheMIHR mutants could not be triggered by light or by synthetic MIH, but could be restored using cell-permeable analogues of cAMP, known to act downstream of MIH reception in hydrozoan oocytes. Phylogenetic analyses showed that Clytia MIHR is related to a subset of bilaterian neuropeptide hormone receptor families involved in diverse physiological processes, including regulation of reproduction. Accordingly, in situ hybridization showed the expression of Clytia MIH precursors and MIHR in non-gonadal neural cells, suggesting a wider role of Clytia MIH-MIHR besides oocyte maturation initiation.To address gonad photoreception, I showed that Clytia spawning is selectively induced by blue-cyan light, and then identified using gonad transcriptome data an opsin photopigment (Opsin9) highly expressed in the ectoderm. Strikingly, in situ hybridization showed that Opsin9 is expressed in the MIH-secreting cells. Introduction of a frame-shift mutation into the Opsin9 gene via CRISPR/Cas9 prevented oocyte maturation and spawning of mutant jellyfish in response to light. Anti-MIH immunofluorescence and rescue experiments with synthetic MIH showed that the essential function of Opsin9 is upstream of MIH release. Spawning in Clytia thus appears to be regulated by a dual function photosensory-neurosecretory cell type, perhaps retained from a distant metazoan ancestor...

Screening of a deeply sequenced transcriptome using Illumina sequencing as well as the genome of the tardigrade Hypsibius dujardini revealed a set of five opsin genes. To clarify the phylogenetic position of these genes and to elucidate the evolutionary history of opsins in Panarthropoda (Onychophora + Tardigrada + Arthropoda), we reconstructed the phylogeny of broadly sampled metazoan opsin genes using maximum likelihood and Bayesian inference methods in conjunction with carefully selected substitution models. According to our findings, the opsin repertoire of H. dujardini comprises representatives of all three major bilaterian opsin clades, including one r-opsin, three c-opsins, and a Group 4 opsin (neuropsin/opsin-5). The identification of the tardigrade ortholog of neuropsin/opsin-5 is the first record of this opsin type in a protostome, but our screening of available metazoan genomes revealed that it is also present in other protostomes. Our opsin phylogeny further suggests that two r-opsins, including an "arthropsin", were present in the last common ancestor of Panarthropoda. While both r-opsin lineages were retained in Onychophora and Arthropoda, the "arthropsin" was lost in Tardigrada. The single (most likely visual) r-opsin found in H. dujardini supports the hypothesis of monochromatic vision in the panarthropod ancestor, whereas two duplications of the ancestral panarthropod c-opsin have led to three c-opsins in tardigrades. Although the early-branching nodes are unstable within the metazoans, our findings suggest that the last common ancestor of Bilateria possessed six opsins: two r-opsins, one c-opsin, and three Group 4 opsins, one of which (Go opsin) was lost in the ecdysozoan lineage.