Lago de las Morrenas 4 (9.498056° [degrees] N, 83.486111° [degrees] W, 3466 m elev.) is the lowest lake in a chain of glacial lakes located in the Valle de las Morrenas, a valley facing almost due north from Cerro Chirripó, the highest peak in the Cordillera de Talamanca in Costa Rica. Coarse resolution analyses of pollen, microscopic charcoal, and loss-on-ignition of a ca. 10,000 year sediment record from Lago de las Morrenas 4 was carried out to complement and extend previous research on the environmental history of the Chirripó highlands and to provide context for high-resolution sampling and analysis of early Holocene sediments. The focus of the high-resolution analysis was the period around 8200 cal yr BP, the time of a prominent Holocene climatic event recognized at many northern hemisphere sites between ca. 8000 and 8400 cal yr BP. The high-resolution sampling of sediments encompassing the time period of the 8200 yr BP event revealed a sharp increase in microscopic charcoal indices coincident with a shift from fibrous silty organic sediment to granular peat. These shifts, which occurred ca. 7900 cal yr BP, are interpreted to reflect an interval of drier climate and lower lake level. A decrease in Poaceae pollen percentages and an increase in Alnus pollen from montane forests may reflect reduced pollen production within the páramo at this time. The peak charcoal concentration and influx value at ca. 7800 cal yr BP in the Morrenas 4 record may match a similar peak in the macroscopic charcoal record from nearby Morrenas 1 that occurred ca. 8000 cal yr BP. Both peaks may correspond to the 8200 yr BP event.

Facilitative interactions can have a powerful influence on the structure of plant communities and must be accounted for in efforts to restore disturbed and invaded habitats, such as the now rare coastal sage scrub (CSS) of California. In this study, I tested for evidence of facilitative effects by the native shrubs Eriogonum fasciculatum var. foliolosum and Artemisia californica on germination and survival of the CSS native annual forb Phacelia distans. P. distans seeds were planted near patches of native shrubs, both under the shrub canopy where any facilitative effects should be strongest, and 0.5 m away in the more exposed grassland. To determine whether the shrub-forb relationship was affected by the presence of invasive annuals, E. fasciculatum sites were assigned either invasive annual removal or non-removal control treatment; no removal treatments were carried out for A. californica. P. distans had significantly higher germination but lower survivorship under the canopy of E. fasciculatum. The results showed no overall effect of invasive removal, but there was a weak interaction effect with location; in shrub-canopy plots, invasive species further lowered survivorship. A. californica showed neither facilitative nor negative effects of this shrub species on either germination or survivorship of P. distans, in contrast with the results for E. fasciculatum. Although E. fasciculatum appears to facilitate the germination of native forbs under its canopy, it also seems to have a negative effect on survival. The weak interaction between location and removal to further decrease survival under the canopy when invasives are present, and the abundance of grasses growing under the canopy, suggest that native shrubs may facilitate the growth of invasive annuals as well as the germination of natives. Consequently, controlling invasive grass abundance may be necessary to capture the benefits of shrub facilitation for the restoration of native CSS herbs.

Nomadic pastoralism is an ancient subsistence strategy, historically balanced and in continuity with sedentary societies. Sedentarization of nomads occurs normally because of ecological disasters, economic opportunities, urbanization, and government policy. In this paper, I examine the effect of changing land use patterns on nomadic pastoral populations in Asia, Africa, and the Middle East, using biogeographic methodology to further explore the contemporary relationship between humans and their environments. Nomadic population information gleaned from diverse ethnographic studies, and GIS data on anthropogenic biome distributions, were used to calculate changes in nomadic population, area of developed land, and nomadic/sedentary population density over the last century in seven countries. There was a significant decrease in the proportion of national populations practicing nomadic pastoralism (paired t-test, p=0.0038, n=7), but no significant overall change in total nomadic populations (paired t-test, p=0.41, n=7); nomadic population decreased in all countries but Sudan and Somalia. There was also no significant change in undeveloped land available for nomadic pastoralism (mean change -12.5%, S.D. ±15.8, paired t-test p=0.07, n=7), though the area of land available for nomadic pastoralism decreased in most countries. There was a negative linear correlation between land development and nomadic population when Somalia and Sudan were omitted (r2=0.84). Nomadic population density decreased in most countries, but increased in Somalia and Sudan. Some nomadic populations may be experiencing an extinction debt effect, where habitat loss combines with increased population density (Somalia, Sudan), but in most others where the population seemed to decrease more rapidly than would be expected due to habitat loss (Saudi Arabia, Mauritania, Iraq, and Afghanistan). The variable relationship between density and habitat loss implies that social factors often overshadow the ecological: though there is a correlation between habitat loss and nomadic population decline, causation is unclear. Despite the limitations of this study, nomadic populations do seem to have a natural balance with their cultural and biological environments that is disrupted by changes in social dynamics with sedentary populations and their subsequent environmental impacts. The loss of cultural diversity inherent in this disruption may decrease the flexibility and adaptability of the overall biosocial human ecosystem.

Termites ecologically engineer their environment by producing termitaria (mounds) used by many other species as dens, lookouts or food sources. The role of termite mounds in biological communities is relatively unknown, despite their ubiquitous nature. I investigated their impact on vertebrates in the Tsavo region of Kenya. Through the characterization of mounds, trapping, direct observation, and collecting microclimate data, I was able to determine the importance of mounds to vertebrates. I found uniform dispersion of mounds, that soil type is correlated with the size of mounds, and that vertebrate activity increases with mound size. I also found no significant differences in overall numbers of animals and species between mound and non-mound areas. Reptiles were found at mound sites significantly more than at non-mound sites, especially the great plated lizard and short-necked skink. I determined that mounds’ microclimate is less variable than that of the ambient. More work is needed to further our understanding of termite mounds' impacts on vertebrates. This study led to discoveries of species not known to be in the area by myself or my affiliated parties.

World-wide amphibian declines sparked concern and encouraged investigation into potential causes beginning in the 1980’s. Infectious disease has been identified as one of the major potential contributors to amphibian declines. For example, Ranavirus has caused amphibian die-offs throughout the United States. Investigators isolated Ranavirus from dead or moribund amphibians during large-scale die-offs of amphibians in the Cades Cove area of Great Smoky Mountains National Park in 1999-2001. In 2009, after nearly a decade without follow-up monitoring, I undertook an investigation to determine if the virus persisted in the area, and if so, to assess spatial, temporal, and taxonomic patterns in prevalence. Three amphibian breeding ponds, including Gourley Pond, the site of these earlier mortality events, were monitored for Ranavirus during the 2009 amphibian breeding season. A peak in prevalence occurred at Gourley Pond corresponding to a massive amphibian die-off. Prevalence varied among three different taxonomic groups during this mortality event with the highest prevalence, 84%, detected in larval Ambystomatids, 44.4% prevalence in adult Newts, and no virus detected in adult Plethodontids. I did not detect virus at either of the other two breeding ponds despite equivalent sampling effort, similar community composition, and close proximity to Gourley Pond. These results suggest that the severity and spatial extent of Ranavirus in Cades Cove remains unchanged since its initial detection a decade ago. Also, despite the observed massive die-offs there is no evidence of local amphibian extinction at Gourley Pond.

Hardwood bottomland ecosystems provide critical habitat for various wildlife among numerous ecosystem services. Since the 1800s, these forested wetlands have been logged and drained for agriculture. The federal government passed a series of legislative acts that protected wetlands and provided monetary support for restoration. The Wetlands Reserve Program (WRP) was established in 1990 with the goal of restoring ecological function in wetlands. Although several studies have measured plant and wildlife responses to WRP restorations, no standard protocol has been developed to monitor the state of ecological restoration at sites. Index of biotic integrity (IBI) models are commonly used to evaluate ecological function by assigning scores derived from biological characteristics measured at disturbed sites and comparing them with reference sites. Therefore, the objectives of my study were to: (1) characterize vegetation, amphibian and bird communities among 17 WRP restoration and 4 reference bottomland sites, and (2) develop IBI models for these communities to use in monitoring ecological restoration. My study was conducted across 10 counties in western Tennessee from March – August 2008, and communities were measured using standard sampling techniques. I detected 15 amphibian and 95 bird species at bottomland WRP sites, which ranged 2 – 21 years old. Anurans were common among sites, but salamanders were only detected at reference sites containing mature forests. The bird community changed predictably in response to succession, with grassland birds dominating young restoration sites and scrub-shrub and forest birds dominating older restoration and reference sites. Vegetation structure was related to site age, and a good predictor of bird community composition. Variables retained in the vegetation IBI model included density of snags, logs and overstory trees, basal area, and percent vertical cover measured using a profile board. The bird IBI model contained relative abundance of bark feeding, branch nesting, and twig nesting guilds. Presence of salamanders was the only variable in the amphibian IBI model. My results indicate that the WRP is contributing to the regional biodiversity of western Tennessee. The IBI models that I developed can be used for monitoring ecological restoration in Tennessee hardwood bottomlands; however, their applicability outside this region should be validated.

The ecological impact of past extinction events is one of the central issues in paleobiology. In face of present environmental changes, a better understanding of past extinctions will enable us to identify the magnitude of biodiversity crises and their underlying processes. The Late Neogene was a time of extraordinary climatic reorganization, including Northern Hemisphere glaciation, the rise of the Central American Isthmus, and associated changes in environmental conditions. Therefore, the Late Neogene extinctions of marine molluscs of South Florida present an ideal platform to examine the interaction between environmental changes and biotic response. In the present study, three different aspects of the Late Neogene extinctions are examined: temporal diversity patterns, selectivity patterns, and the impacts of these extinction events on ecological interactions. In the first part of this study, the diversity pattern of marine bivalves of Florida during the Late Neogene. Using bulk samples enables to take account of varying sampling intensity and underlying relative abundance distributions in diversity estimation. Comparison of sample-standardized diversity analyses shows that both richness and evenness of marine bivalve community declined at the Tamiami - Caloosahatchee transition, which coincides with the proposed first phase of the Late Neogene extinctions at the end of the Pliocene. Although magnitude of biodiversity loss was severe during these late Neogene extinction events, extinction risk was non-randomly distributed across taxa. Selectivity analyses, a combination of both commonly used non-parametric tests and logistic regressions, suggest that abundance or local population size was positively related with survivorship during the late Neogene. As other biological or ecological traits can influence this observed relation between abundance and extinction vulnerability, multivariate approach is used to control for these traits. Even after effects of geographic range and feeding mode is considered, the positive relation between abundance and survivorship, which supports predictions from biological studies, is evident in case of these Late Neogene extinction events. While present analyses show that the increase in relative abundance of Chione is a major factor in driving changes in community compositions, interactions between Chione and its' drilling predators also varied during the Late Neogene. This study suggests that identification of predators is a critical part of evaluation of prey-predator interactions. When drill hole traces of two predatory gastropod groups, muricids and naticids, are differentiated based on a revised site selectivity criteria, temporal trend of prey size selectivity differs from previous reports. Both groups exhibit some changes in predatory behavior during phases of the Late Neogene extinctions, suggesting that previous hypothesis of prey turnover at the Caloosahatchee - Bermont transition cannot explain the observed temporal trends of prey size selectivity in the present study.

ABSTRACT Recent archaeological investigations indicate that coastal Fort Walton cultures in the St. Joseph Bay region of northwest Florida emphasized marine and estuarine foraging. These late prehistoric (A.D. 1000-1500) peoples collected fish, shellfish, and other aquatic resources. At the Richardson's Hammock site (8Gu10), radiocarbon-dated to about A.D. 1300, as at dozens of other shell middens around this salty bay, large gastropods were a major subsistence component. This adaptation is in sharp contrast with that of contemporaneous inland Fort Walton societies, who relied on maize agriculture. It is unknown whether coastal groups represent separate hunter-gatherer-fisher populations or seasonal migrations by inland farming villagers. This thesis research uses stable oxygen and carbon isotope analysis on lightning whelks (Busycon sinistrum) to determine the seasonality of Fort Walton foraging, and compares the environment of prehistoric St. Joseph Bay with that of the modern bay. Oxygen isotope profiles suggest that shellfish collecting was relegated primarily to the summer months, producing a scheduling conflict with the primary growing season for maize in northwest Florida. Thus, it is argued that coastal and inland Fort Walton probably represent separate culture groups. The relationship between d18Oshell and d13Cshell indicates similar environmental and climatic conditions between prehistoric St. Joseph Bay and today. However, modern whelks are depleted in d13C compared to Fort Walton whelks, which reflects both twentieth century CO2 emissions and years of dredging and wastewater pollution entering the bay.

The monotypic cave carabid genus Darlingtonea is widely distributed along the eastern band of the Mississippian/Pennyroyal plateau in Kentucky and northern Tennessee. DNA sequence data from the mitochondrial gene cytochrome oxidase subunit I (COI) was collected from one to four individuals from 27 populations, and patterns of phylogeography and population structure were inferred from COI haplotypes. A hierarchical analysis of molecular variance found low nucleotide diversity within populations and statistically significant variation among geographically-defined groups tested based on two a priori hypotheses of structure. Population structure among five distinct genetic clusters identifies approximate locations of barriers to gene flow among closely grouped caves in the upper Rockcastle River drainage. Partial sequences of one mitochondrial (COI) and one nuclear (wingless) gene were gathered from 60 to 106 terminal taxa, including representatives of all five genera of cave trechines from Kentucky and Tennessee. Alignments were analyzed using maximum parsimony, Bayesian, and maximum likelihood methods of phylogenetic inference. Comparison of analyses demonstrates conflicting tree topologies among individual markers and different reconstruction methods. Despite a lack of consensus regarding genus-level relationships, most analyses supported each genus as natural (monophyletic) with the exception of Pseudanophthalmus

Facilitative interactions can have a powerful influence on the structure of plant communities and must be accounted for in efforts to restore disturbed and invaded habitats, such as the now rare coastal sage scrub (CSS) of California. In this study, I tested for evidence of facilitative effects by the native shrubs Eriogonum fasciculatum var. foliolosum and Artemisia californica on germination and survival of the CSS native annual forb Phacelia distans. P. distans seeds were planted near patches of native shrubs, both under the shrub canopy where any facilitative effects should be strongest, and 0.5 m away in the more exposed grassland. To determine whether the shrub-forb relationship was affected by the presence of invasive annuals, E. fasciculatum sites were assigned either invasive annual removal or non-removal control treatment; no removal treatments were carried out for A. californica. P. distans had significantly higher germination but lower survivorship under the canopy of E. fasciculatum. The results showed no overall effect of invasive removal, but there was a weak interaction effect with location; in shrub-canopy plots, invasive species further lowered survivorship. A. californica showed neither facilitative nor negative effects of this shrub species on either germination or survivorship of P. distans, in contrast with the results for E. fasciculatum. Although E. fasciculatum appears to facilitate the germination of native forbs under its canopy, it also seems to have a negative effect on survival. The weak interaction between location and removal to further decrease survival under the canopy when invasives are present, and the abundance of grasses growing under the canopy, suggest that native shrubs may facilitate the growth of invasive annuals as well as the germination of natives. Consequently, controlling invasive grass abundance may be necessary to capture the benefits of shrub facilitation for the restoration of native CSS herbs.