No description available.

No description available.

is a functionally diverse large group of proteins sharing a jelly roll β-barrel fold. An enzymatic member 3-hydroxyanthranilate-3,4-dioxygenase (HAO) and a non-enzymatic member pirin, which is a human nuclear metalloprotein of unknown function present in all human tissues, were selected for structural and functional studies in this dissertation work. HAO is an important enzyme for tryptophan catabolism and for 2-nitrobenzoic acid biodegradation. In this work, seven catalytic intermediate were captured in HAO single crystals, enabling for the first time a nearly complete structural snapshot viewing of the entire molecular oxygen activation and insertion mechanism in an iron- and O2-depedent enzyme. The rapid catalytic turnover rate was found achieved in large part by protein dynamics that facilitates O2 binding to the catalytic iron, which is bound to the enzyme by a facile 2-His-1-carboxylate ligand motif. An iron storage and chaperon mechanism was also discovered in the bacterial source of this enzyme, which led to a proposed novel biological function of a mononuclear iron-sulfur center. Although human pirin protein shares the same structural fold with HAO, its iron ion is coordinated by a 3-His-1-carboxylate ligand motif. Pirin belongs to a subset of proteins whose members are playing regulatory functions in the superfamily. In this work, pirin is shown to act as a redox sensor for the NF-κB transcription factor, a critical mediator of intracellular signaling that has been linked to cellular responses to pro-inflammatory signals which controls the expression of a vast array of genes involved in immune and stress responses.

is a functionally diverse large group of proteins sharing a jelly roll β-barrel fold. An enzymatic member 3-hydroxyanthranilate-3,4-dioxygenase (HAO) and a non-enzymatic member pirin, which is a human nuclear metalloprotein of unknown function present in all human tissues, were selected for structural and functional studies in this dissertation work. HAO is an important enzyme for tryptophan catabolism and for 2-nitrobenzoic acid biodegradation. In this work, seven catalytic intermediate were captured in HAO single crystals, enabling for the first time a nearly complete structural snapshot viewing of the entire molecular oxygen activation and insertion mechanism in an iron- and O2-depedent enzyme. The rapid catalytic turnover rate was found achieved in large part by protein dynamics that facilitates O2 binding to the catalytic iron, which is bound to the enzyme by a facile 2-His-1-carboxylate ligand motif. An iron storage and chaperon mechanism was also discovered in the bacterial source of this enzyme, which led to a proposed novel biological function of a mononuclear iron-sulfur center. Although human pirin protein shares the same structural fold with HAO, its iron ion is coordinated by a 3-His-1-carboxylate ligand motif. Pirin belongs to a subset of proteins whose members are playing regulatory functions in the superfamily. In this work, pirin is shown to act as a redox sensor for the NF-κB transcription factor, a critical mediator of intracellular signaling that has been linked to cellular responses to pro-inflammatory signals which controls the expression of a vast array of genes involved in immune and stress responses.

No description available.

Reaktionen von molekularem Sauerstoff mit organischen Molekülen sind aufgrund dessen einzigartigen Triplett-Zustands Spin-verboten. Daraus resultiert eine hohe energetische Barriere für solche Reaktionen, welche ein Problem für effektive Oxidationsreaktionen zur Energiegewinnung oder Synthese unter Verwendung von Sauerstoff darstellt. Ein Weg das Spin-Verbot zu umgehen, besteht in der Verwendung von Übergangsmetallkomplexen, allen voran Eisen-Komplexen, die ungepaarte d-Elektronen aufweisen, wodurch alternative Reaktionspfade beschritten werden können. Die vorliegende Arbeit beschäftigt sich in diesem Zusammenhang mit der Sauerstoffaktivierung an verschiedenen, synthetischen nicht-Häm-Eisen-Komplexen, wobei gleichzeitig die Problematik der vollständigen vier-Elektronen-Reduktion von O2 adressiert wird. Besagte nicht Häm-Komplexe sind inspiriert durch enzymatische Vorbilder, die in der Lage sind, O2 zu aktivieren und selektiv umzusetzen, jedoch in ihrer Eigenschaft als große Biomoleküle als schwer-untersuchbar und nicht-synthetisierbar gelten. In vier Studien wird erstmals für den synthetischen nicht-Häm-Bereich die direkte Verwendung von molekularem Sauerstoff zur Gewinnung von Eisen-Sauerstoff-Intermediaten, die für Mechanismen der Sauerstoffreduktion und für Substratoxidationen relevant sind, gezeigt. Die identifizierten Eisen(IV)-Oxido-, Eisen(III)-Superoxido- und Eisen(III)-Peroxido-Kupfer(II)-Spezies wurden mit spektroskopischen Methoden wie der Mößbauer-Spektroskopie charakterisiert. Damit stellen diese untersuchten Systeme sowohl funktionale als auch strukturelle Modelle für wichtige Enzyme wie die lösliche Methanmonooxygenase, die Cytochrom-c-Oxidase oder Klasse Ia Ribonukleotidreduktasen dar. Insgesamt liefert die Arbeit damit einen weiteren wichtigen Schritt für die Adaptierung biologischer Vorbilder hin zur Entwicklung neuer künstlicher Systeme, die auf günstigem, ungiftigem Eisen sowie auf Sauerstoff als universell verfügbaren Oxidationsmittel basieren. / Due to the unique triplet ground state of molecular oxygen its reactions with organic molecules are spin-forbidden due to the unique triplet state of O2. This results in a high energetic barrier for such reactions, which poses a problem for effective oxidation reactions for energy production or the use of dioxygen in synthesis. One way to circumvent the energetic barrier of spin forbidden reactions is to use transition metal complexes, especially iron complexes, which have unpaired d-electrons and allow alternative reactions pathways. In this context, the present work deals with oxygen activation on various synthetic non-heme iron complexes, while at the same time addressing the challenging four-electron reduction of O2. The mentioned non-heme complexes are inspired by enzymes that effectively activate and selectively convert O2. However, these enzymes are considered difficult to study and cannot be efficiently synthesized as they are large biomolecules. This work consists of four studies, that show the direct use of molecular oxygen to obtain iron-oxygen intermediates, which are relevant for mechanisms of oxygen reduction and substrate oxidation. The use of dioxygen in this synthetic non-heme context is unprecedented. Different iron(IV)-oxido, iron(III)-superoxido and iron(III)-peroxido-copper(II) species were characterized using various spectroscopic methods such as Mößbauer spectroscopy. They serve as structural as well as functional models for important enzymes such as the soluble methane monooxygenase, the cytochrome c oxidase or class Ia ribonucleotide reductases. Overall, this work adds another important step on the way to adapting biological principles to the development of new artificial systems based on affordable, non-toxic iron complexes and oxygen as the universally available oxidant.

As fossil fuel resources become more and more scarce, attention has been turned to alternative sources of fuels and energy. One promising prospect is the conversion of methane (natural gas) to methanol, which requires an initial activation of a C-H bond and subsequent formation of a C-O bond. The most well studied methodologies for both C-H activation and C-O bond formation involve oxidation of the metal center. Metal complexes with facile access to oxidation states separated by four charge units, required for two subsequent oxidations, are rare. Non-oxidative methods to perform C-H bond activation or C-O bond formation must be pursued in order for methane to methanol to become a viable strategy. In this dissertation studies on redox and non-redox methods for both C-H activation and C-O bond formation are discussed. In the early chapters C-O bond formation in the form of reductive functionalization is modeled. Polypyridine ligated rhodium complexes were studied computationally to determine the properties that would promote reductive functionalization. These principles were then tested by designing an experimental complex that could form C-O bonds. This complex was then shown to also work in acidic media, a critical aspect for product stabilization. In the later chapters, non-oxidative C-H activation is discussed with Ir complexes. Both sigma bond metathesis and concerted metalation deprotonation were investigated. For the former, the mechanism for an experimentally known complex was elucidated and for the latter the controlling factors for a proposed catalyst were explored.

L’oxydation catalytique des liaisons C-H, en condition aérobie est l’une des réactions « phare » de la chimie, aussi bien d’un point de vue fondamental qu’industriel. Le principal défi consiste en l’utilisation de l’oxygène moléculaire comme oxydant « vert » pour l’activation de ces liaisons C-H. De nombreuses métalloprotéines, telles que les mono-oxygénases (Fe, Cu), sont capables de réaliser ces réactions dans des conditions douces. Une stratégie actuelle consiste à développer des systèmes synthétiques capables de reproduire de manière efficace les propriétés catalytiques de ces enzymes. L’objectif principal de nos travaux a été de synthétiser et de caractériser des modèles de mono-oxygénases solubles (sMMO) et membranaires (pMMO). Deux approches ont été développées. La première a consisté à élaborer des ligands ditopiques dissymétriques, dont les deux sites de coordination tris-(2-pyridymethyl)amine “TPA” et pyridinedicarboxamide “PydCA”, sont enclavés dans un seul macrocycle afin de favoriser une distance intermétallique optimale. La seconde stratégie est basée sur la synthèse de ligands ditopiques où les motifs coordinants, tetraazacyclotetradecane “cyclam” et dipicolylamine “DPA”, sont séparés par un espaceur de type phényle. Ces deux approches ont conduit à l’obtention et à la caractérisation, à l’état solide (structure aux rayons X) et en solution (spectroscopie, électrochimie), de nombreux complexes mono et dinucléaires du fer, du cuivre et du cobalt. L’étude de la réactivité de certains complexes mononucléaires vis-à-vis des oxydants tels que O2 et H2O2, en l’absence de substrats organiques, a permis d’identifier des espèces métal-oxygène. L’oxydation catalytique de substrats organiques a également été réalisée. / Catalytic oxydation of C-H bonds using molecular oxygen as ‘green’ oxidant remains a great challenge from both fundamental and industrial point of views. Many metalloproteins, such as copper end iron-based mono-oxygenases are able to perform these reactions under mild conditions. A current strategy is to develop synthetic complexes which can reproduce the efficiency of such enzymes. The main objective of our work has been to synthesize and characterize new models of soluble (sMMO) and particulate (pMMO) mono-oxygenases. Two approaches have been developed. The first strategy was to synthesize unsymmetrical dinucleating ligands bearing two coordination sites, tris-(2-pyridylmethyl)amine “TPA” and pyridinedicarboxamide “PydCA”, which are embedded in a single macrocycle to favor intermetallic interaction. The second strategy is based on the synthesis of dinucleating ligands where coordinating patterns, tetraazacyclotetradecane “cyclam” and dipicolylamine “DPA”, are separated by a phenyl type spacer. These two approaches have led to the formation and characterization in the solid state (X-ray structure) and in solution (spectroscopy, electrochemistry) of many mononuclear and dinuclear iron, copper and cobalt complexes. The study of the reactivity of some mononuclear complexes towards oxidants such as O2 and H2O2, in absence of organic substrates, has led to the identification of metal-oxygen species. Catalytic oxidation of organic substrates was also conducted.

No description available.

Le monoxyde d'azote est exclusivement synthétisé chez les mammifères par une famille d’hémoprotéines, les NO-Synthases. Le cœur de l’activité des NO-Synthases est l’activation de l’oxygène c'est-à-dire l’activation de l’intermédiaire réactionnel FeIIO2. Cette étape est contrôlée par la réactivité intrinsèque du fer, par les transferts de proton et les transferts d’électron. Elle doit être parfaitement maîtrisée car elle contrôle le chemin catalytique emprunté et la nature du produit final. Comprendre l’étape d’activation de l’oxygène est essentiel à la compréhension du rôle biologique et/ou pathologique de la NO-Synthase de mammifère. Cette question s'étend aux NO-Synthases bactériennes pour lesquelles on ne connait ni le mécanisme moléculaire ni la fonction biologique. Ce manuscrit propose une analyse approfondie de l’étape d’activation de l’oxygène de la NO-Synthase. Dans un premier temps, nous avons étudié l’influence de l’environnement proximal sur la réactivité intrinsèque du fer et l’activation de l’oxygène. Nous avons généré des protéines mutées qui modifient les propriétés électroniques de la liaison proximale de l’hème. Ces protéines mutées ont été caractérisées par différentes spectroscopies (résonance paramagnétique électronique, Raman de résonance). Dans un second temps nous avons directement étudié le complexe FeIIO2, en présence d’analogues de substrat, grâce à des analyses de cinétique rapide en flux continu et en flux arrêté (stopped-flow). Dans un troisième temps, le rôle du cofacteur tetrahydrobioptérine dans le transfert de proton et d’électron a été étudié par une méthode de piégeage à des temps très courts : le freeze-quench. L'ensemble de nos résultats montrent que l’activation de l’oxygène est régulée par les propriétés électro-donneuses du ligand proximal et par le réseau de liaisons H distal. Nous mettons en évidence des différences dans le rôle redox du cofacteur tetrahydrobioptérine entre la NO-Synthase de mammifère et la NO-Synthase bactérienne. La difficulté majeure pour comprendre l’étape d’activation de l’oxygène de la NO-Synthase réside dans la complexité et la rapidité de la réaction catalytique. Dans ce contexte, nous avons cherché à adapter une méthodologie qui a prouvé son efficacité dans le cas des cytochromes P450 : la cryo-réduction couplée à des sauts en température. / Nitric oxide is exclusively synthesized by NO-Synthases in mammals. The heart of the NO-synthase activity is oxygen activation, which corresponds to the activation of the FeIIO2 intermediate. This step depends on the heme electronic properties and on the electron and proton transfers. Oxygen activation has to be well mastered to control exactly the nature of the end-product. Understanding the oxygen activation step is necessary to better understand the biological/pathological role of the mammalian NO-Synthases. Furthermore, bacterial NO-Synthases function and oxygen activation mechanism are unknown. This PhD work proposes a deep analysis of the oxygen activation step in NO-Synthases. First, proximal environment has been studied with mutated proteins. These mutations impact the electronic properties of the heme proximal bond. Spectroscopic analyses of these mutants have been done by electron paramagnetic resonance and resonance Raman. Then, we have studied the FeIIO2 intermediate with substrate analogs which has necessitated continuous flow and stopped-flow analyses. Finally, the role of the tetrahydrobiopterin cofactor in the electron and proton transfer has been studied and clarified thanks to a very fast trapping method : the freeze-quench. Our results show that the oxygen activation step is elaborately controlled by the proximal bond electron donation and the distal H bond network. At the same time we show some differences between mammalian and bacterial NO-Synthases concerning the redox role of the tetrahydrobiopterin cofactor. The major obstacle to understand the oxygen activation step resides in the complexity of the active site chemistry and the rate of catalytic reactions. For this reason, we propose to adapt an already successful protocol to trap some intermediates in the cytochromes P450 mechanism : cryo-reduction coupled with temperature jumps.