The isolation of deoxyribonucleic acid (DNA) was studied in the diploma thesis by using three different methods: phenol extraction, salting with sodium chloride and magnetic separation with reversible adsorption of nucleic acids on different magnetic carriers. There were used five different properly functionalized carriers for the isolation of DNA: magnetic silicagel, P(HEMA-co-GMA) ox. I, P(HEMA-co-GMA) ox. II, Dynal DNA Direct and Perovskit 439. The reversible imobilization of DNA on the magnetic carrier was proceeded under the conditions of high concentration of NaCl and poly(ethyleneglycol) (PEG). There was induced the condensation of DNA by 2 M NaCl and PEG with molecular mass 6000 for binding of the DNA to the magnetic carriers and the final concentration of PEG in the separation mixture was 8 and 16 %. The aim was to gain the DNA of quality suitable for polymerase chain reaction (PCR). The DNA was isolated from the bacterial cultures of three probiotic strains, L. amylovorus CCM 4380T, L. zeae CCM 7069 T, L. plantarum CCM 7039T, which were cultivated in MRS medium. The DNA was also isolated from the fermented dairy products: Jihočeský zákys s ovocem jahoda (the fermented dairy product with the probiotic culture of Lactobacillus acidophilus, Bifidobacterium lactis and Streptococcus thermophilus), Revital active (the yogurt with inulin and the probiotic culture of Lactobacillus rhamnosus, Lactobacillus acidophilus and Bifidobacterium sp.) and Actimel višeň (the dairy product with the probiotic culture of Lactobacillus casei). When the PCR with the isolated DNA was passed off, the PCR products were detected by the gel electrophoresis with agarose. The success of the DNA isolation of the probiotic bacteria by phenol extraction, salting with NaCl and by magnetic separation, was verified by the PCR method. The method of magnetic separation using magnetic carriers was also verified for the isolation of DNA of quality suitable for PCR from the probiotic fermented dairy products.

Ce travail s’intéresse à l’étude de l’adsorption sélective du phénol dans des solutions d’hydrocarbures pour la purification des biocarburants issus de la biomasse de la 2ème génération. L’objectif de ce travail est de proposer, à l’aide d’une approche expérimentale et théorique, un adsorbant présentant à la fois une grande capacité d’adsorption du phénol, une sélectivité envers le phénol même en présence d’autres composés aromatiques ainsi qu’un bon pouvoir régénératif dans des conditions douces.Plusieurs familles d’adsorbants sont étudiées : des zéolithes Y et USY avec différents cations de compensation de charge (H+ et Na+) et différentes proportions de la surface micro et de mésoporeuse, des solides siliciques ayant des variables teneurs en groupement silanols et du charbon actif comme solide de référence. Les résultats d’adsorption montrent que dans les micropores des zéolithes, le phénol « interne » peut s’adsorber au nombre de 2 à 4 molécules par supercage, sans pouvoir entrer dans les cages sodalites. Dans la surface mésoporeuse des zéolithes USY et des solides siliciques, la quantité de phénol « externe » adsorbée dépend de la densité des silanols. En présence de toluène dans le mélange, les sites acides montrent une sélectivité importante envers l’adsorption du phénol, cette sélectivité est justifiée par une énergie d’interaction du phénol supérieure à celle du toluène sur ces sites. En revanche, l’adsorption du phénol sur le Na+ et les groupements silanols est affectée respectivement par la présence de faibles et de hautes teneurs en toluène. L’étude de la capacité de régénération des adsorbants met en évidence que les espèces phénoliques fortement liées sont formées sur les sites acides des zéolithes Y (H+Y, Na+Y et USY).Le meilleur compromis en termes de capacité d’adsorption de phénol, de sélectivité et de pouvoir régénératif est obtenu sur la zéolithe H+Y présentant un rapport Si/Al de 2,9. / This work focuses on the study of the selective adsorption of phenol from hydrocarbon solutions for the purification of 2nd generation biofuels. The objective of this work is to propose, using experimental and theoretical approaches, an adsorbent that can gather a good adsorption capacity of phenol, a selectivity towards phenol even in the presence of other aromatic compounds as well as good regeneration capacity under mild conditions.Several adsorbents were studied: Y and USY zeolites with different cations (H+ and Na+) and different proportions of micro and mesoporous surfaces, silica based solids presenting variable amount of silanol group and charcoal as a reference. The adsorption results show that, in the microporous of zeolites, the "internal" phenol can be adsorb to the number of 2 to 4 molecules per supercage, without being able to enter in the sodalite cages. In the mesoporous surface of the USY zeolites and the silica based solids, the amount of adsorbed "external" phenol depends on the density of the silanol groups. In the presence of toluene in the mixture, the acidic sites show a high selectivity towards phenol adsorption, this selectivity is justified by a higher interaction energy of phenol than toluene over these sites. Whereas, the adsorption of phenol over Na+ cation and over the silanol groups was respectively affected at low and high toluene levels. The study of the regeneration capacity of the adsorbents shows that the strongly bounded phenolic species are formed on the acidic sites of Y zeolites (H+Y, Na+Y and USY).The best compromise in terms of phenol adsorption capacity, selectivity and regeneration ability was obtained over the H+Y zeolite presenting a Si/Al ratio of 2.9.

Candida tropicalis yeast is a microorganism that possesses high tolerance for phenol and strong phenol degrading activity. This yeast is capable of utilizing phenol as the sole source of carbon and energy without formation of any secondary waste product. Catechol-1,2- dioxygenase was isolated from cytosolic fraction of this yeast by the procedure consisting of chromatography on DEAE-Sepharose and gel permeation chromatography on Sephadex G- 100. The catechol-1,2-dioxygenase was purified to homogeneity. The enzyme activity was followed by HPLC (catechol consumption and/or cis,cis-muconic acid formation). The activity profiles at different temperatures showed temperature optimum of 30řC. Kinetic characterizations were studying in different values of pH. The values of Km and Vmax of 0,52 mM and 17,2 nM/min for consumption of catechol, respectively, and 0,34 mM and 12,6 nM/min for formation of cis,cis-muconic acid, respectively, were found at optimum pH of the reaction, pH 7,6.

Trichloroethylene (TCE) is a toxic pollutant that has become a widespread problem by seeping into groundwater across the developed world. Clean-up of sites contaminated with TCE is extremely difficult due to the absence of an efficient and cost-effective method for clean-up. Bioremediation efforts include a variety of potential microbial candidates with various metabolic capabilities as clean up options of contaminated sites. Cupriavidus necator, a soil bacterium was found to possess the ability to degrade TCE via a phenol-dependent pathway. Previous research by Ayoubi and Harker (1998) created a strain (MM02) capable of constitutive TCE degradation but the underlying genetic alteration causing constitutive production of the phenol hydroxylase pathway (PHL) and TCE breakdown was poorly characterized. We attempted to gain further understanding of the alterations that occurred in the PHL pathway to cause TCE to break down and replicate constitutive TCE degradation in a new strain with reduced foreign elements that may be introduced into the environment. Strain MM02 possessing this constitutive degradation activity and strain MM01were sequenced and compared to discover the source of this variation. A 210 base-pair deletion in the beginning of the PHL operon was identified and is likely the cause of this altered activity. The new strain of C. necator (MM14) was created using traditional bacterial mating methods and included a cleanly introduced kanamycin resistance gene and its associated promoter which could drive constitutive expression of the PHL pathway. The TCE degradation abilities of strains MM01, MM02, and MM14 were evaluated through the TCE degradation assay and gas chromatography. We had difficulty accurately measuring the concentration of TCE due to its volatile nature and dramatically altered the method ultimately reducing variation and capturing TCE concentrations in assays. When accurate readings were obtained, none of the strains measured exhibited quantifiable TCE degradation activity when compared to controls. Our results showed .08% of the degradation by strain MM02 measured previously (P. J. Ayoubi, 1997). Based on our findings, we were unable to replicate the TCE degradation caused my MM02 and our genetically modified strain also failed to breakdown TCE.

Phenol Formaldehyde (PF) and polymeric isocyanate (pMDI) are the two main types of adhesives used in the production of structural wood-based composites. Much is unknown about various aspects of adhesion between these two types of resins and wood. The present research describes the development of techniques which will permit an enhanced understanding of 1.) the extent of cure of PF within a wood based composite, 2.) the scale of molecular level interactions between PF and pMDI and wood, 3.) mechanical performance and durability of wood-adhesive bonds. Correlations were established between conventional methods of characterization of neat PF (thermomechanical analysis, swelling studies) and measurements made using 13C CP/MAS NMR. These correlations were then utilized to characterize PF cured in the presence of wood. The use of 13C labeled PF allowed estimates of relative degrees of resin conversion to be made. The use of 13C and deuterium labeled PF allowed qualitative estimates of resin molecular rigidity to be made. The scale of molecular level interactions between PF and pMDI and wood was probed using NMR relaxation experiments. Evidence was shown to suggest the formation of an interpenetrating polymer network (IPN) morphology existing at both types of wood-resin interphases. The formation of the IPN morphology was strongly influenced by resin molecular weight, cure temperature and the presence of solvent. A new test geometry for the evaluation of the fracture toughness of wood-adhesive bonds was developed. Consistent and reliable results were obtained. It was found that low molecular weight PF possessed enhanced durability over high molecular weight. / Ph. D.

Thesis (DTech (Chemistry))--Cape Peninsula University of Technology, 2016. / The use of ozone as an advanced oxidation process is gathering wide spread attention with the major limitation to its application being its cost of operation and design considerations. While the general approach of most researches is to buttress the already known fact of the efficacy of the process, little attention is given to studying the by-products of ozone reactions with organics. The aims of this study were to investigate the efficacy of the ozonation process for removing recalcitrant phenolics: phenol, 2-chlorophenol (2CP), 4-chlorophenol (4CP) and 2,4-dichloropheno (2,4DCP) from aqueous medium with a view of understanding various reaction pathways of the process and identifying possible intermediates and residual compounds using liquid chromatography-mass spectrometry (LC-MS). The choice of the selected chlorophenols would also elucidate the role of the positioning of the chlorine atoms in determining reaction rates, pathways and subsequent mechanisms and by-products. Sequel to this, oxy-hydroxy iron in β-phase (β-FeOOH, akaganite) and various β-FeOOH bonded composites on support metal oxides (Al2O3, NiO and TiO2) were prepared via hetero-junction joining, and explored as a possible promoter to improve the efficiency of the ozonation process. Apparent first order reaction rates constants of tested phenolics was in the order 2,4-DCP > 2-CP > Phenol > 4-CP, irrespective of the tested pH. The individual rates however increased with increasing pH. The position 4 chlorine atom was found to be least susceptible to hydroxylative dechlorination. Catechol intermediate and pathway was identified as the major degradation pathway for phenol and 2-CP, while 4-chlorocatechol pathways were more important for 4-CP and 2,4-DCP. The formation of polymeric dimers and trimers by all compounds was pronounced at alkaline pH. Heterogeneous catalytic ozonation using β-FeOOH reduced ozonation time for 4-CP by 32%. Mechanism for β-FeOOH/ozone catalysis showed that the catalyst suffered reductive dissolution in acidic pH and the kinetics of 4-CP removal using the catalyst was best described using a two stage kinetic model. The first stage was attributed to heterogeneous catalysis of ozone breakdown on β-FeOOH surface generating faster reacting radicals, while the second stage was due to homogeneous catalysis by reduced Fe2+ ions in solution. β-FeOOH stabilized on NiO at a 5% ratio exhibited superior catalytic property compared to the other tested composites. Characterization by high-resolution transmission electron microscopy (HRTEM) affirmed a β-FeOOH-NiO bonded interfaced composite which was stable as a iv catalyst over four (4) recycle runs. The mechanism of operation of the composite was via an increased ozone breakdown to radicals as monitored via photoluminescence experiments. The composite material produced satisfactory results when tested on real wastewater samples. Results from this study contribute to the current understanding on reaction mechanisms for ozone with phenols and chlorophenols, for the first time monitoring time captured intermediates via liquid chromatography-mass spectrometric method, which preserves the integrity of reaction intermediates. Also this study proposes heterogeneous catalysts; β-FeOOH and β-FeOOH bonded composites as possible improvements for simple ozone based water purification systems.

Groundwater contamination is a concern due to the large number of people that can become exposed to the contaminant. The chemicals benzene and phenol are known groundwater contaminants. The main health problem caused by benzene or phenol is bone marrow toxicity. Benzene and phenol are also immunotoxins reported to cause decreased thymic weights, altered lymphocyte mitogenic responses, and lower antibody production. Cytokines are key signaling molecules produced by the cells of the immune system to activate other cells in the immune system, produce antibodies, and recruit other cells to sites of inflammation. The purpose of this study was to determine if exposure to benzene or phenol in drinking water for 30 days could lead to alterations in IL-l, IL-6, and TNFa production in in vitro activated murine macrophages, or in IL-2, IL-3, and IFNy production in in vitro activated murine lymphocytes. Cytokine mRNA and protein production were evaluated to determine if any alteration occurred. Benzene and phenol exposure resulted in significantly decreased thymus weights. Interleukin-2 mRNA production was increased at the medium dose (200 mg/L) but the IL-2 protein secreted from the lymphocytes of benzene-treated mice was unchanged. The macrophages from benzene-treated mice showed a decrease at all dosage levels in both TNFa mRNA and protein production. These macrophages also produced increased JLIa mRNA at the medium benzene concentration, although this increase did not mean an increase of IL-Ia protein secreted. Mice given phenol at the medium (20 mg/L) and high (100 mg/L) dosages had decreased 30-day body weights. The production ofiL-3 mRNA was decreased in the lymphocytes of mice receiving both low and high concentrations of phenol. Lowered TNFa mRNA values were observed in the macrophages from phenoltreated mice. Interleukin-la mRNA production was increased in the macrophages of mice given the low (5 mg/L) dose of phenol. The TNFa cytokine protein was decreased at the low and medium doses, and the IL-l a protein level was decreased at the medium and high doses. The results indicate that benzene and phenol in groundwater should continue to be a concern for public and regulatory agencies.

This work reports the elucidation of the structure of a copolymer generated by the cross- catalyzed reactions of PF and pMDI prepolymers.  The electronic behavior of phenolic monomers as perturbed by alkali metal hydroxides in an aqueous environment was studied with 1H and 13C NMR.  Changes in electronic structure and thus reactivity were related to solvated ionic radius, solvent dielectric constant, and their effect on ion generated electric field strength. NMR chemical shifts were used to predict order of reactivity for phenolic model compounds with phenyl isocyanate with good success.  As predicted, 2-HMP hydroxymethyl groups were more reactive than 4-HMP in forming urethane bonds under neutral conditions and 2-HMP hydroxymethyl groups were more reactive than 4-HMP in forming urethane bonds under alkaline conditions. The structure of the reaction products of phenol, benzyl alcohol, 2-HMP, and 4-HMP with phenyl isocyanate were studied using 1H and 13C NMR under neutral organic and aqueous alkaline conditions.  Reactions in THF-d8 under neutral conditions, without catalyst, were relatively slow, resulting in residual monomer and the precipitation of 1,3-diphenyl urea from the carbamic acid reaction.  The reactions of phenol, 2-HMP, and 4-HMP in the presence of TEA catalyst favored the formation of phenyl urethanes (PU). Reactions with benzyl alcohol, 2-HMP, and 4-HMP in the presence of DBTL catalyst favored the formation of benzyl urethanes (BU).  Reactions of 2-HMP and 4-HMP led to formation of benzylphenyldiurethane (BPDU).  DBTL catalysts favored formation of BDPU strictly by a benzyl urethane pathway, while TEA favored its formation mostly via phenyl urethane, although some BU was also present.  Under aqueous alkaline conditions, 2-HMP was more reactive than 4-HMP, exhibiting an enhanced reactivity that was attributed to intramolecular hydrogen bonding and a resulting resonance stabilization of the phenolic aromatic ring. ATR-FTIR spectroscopic studies generated real time structural information for model compound reactions of the cross-catalyzed system, differentiating among reaction peaks generated by the carbamic acid reaction, PU and BU formation.  ATR-FTIR also permitted monitoring of propylene carbonate hydrolysis and accelerated alkaline PF resole condensation.  ATR-FTIR data also showed that the overall reaction stoichiometry between the PF and pMDI components drove copolymer formation.  Benzyl urethane formation predominated under balanced stoichiometric conditions in the presence of ammonium hydroxide, while phenyl urethane formation was favored in its absence.  Accelerated phenolic methylene bridge formation became more important when the PF component was in excess in the presence of sufficient accelerator.  A high percentage of free isocyanate was present in solid copolymer formed at ambient temperature. The combination of ammonium hydroxide and tin (II) chloride synergistically enhanced the reactivity of the materials, reducing the residual isocyanate. From 13C CP/MAS NMR of the copolymer, the presence of ammonium hydroxide and tin (II) chloride and the higher PF concentration resulted in substantial urethane formation.  Ammonium hydroxide favored formation of benzyl urethane from the 2-hydroxymethyl groups, while phenyl urethane formed in its absence.  The low alkalinity PF resole with ammonium hydroxide favored benzyl urethane formation.  Comparison of these results with the 13C NMR model compound reactions with phenyl isocyanate under alkaline conditions confirmed high and low alkalinity should favor phenyl and benzyl urethane formation respectively.  These cross catalyzed systems are tunable by formulation for type of co-polymer linkages, reactivity, and cost. / Ph. D.

In this study southern pine scrim was treated with low molecular weight melamine formaldehyde (MF), phenolic formaldehyde (PF), and furfuryl alcohol (FA) at different loadings and formed into 25-mm thick panels. Mechanical, dimensional and biological properties were evaluated. Results showed that samples treated with 5 percent MF had the highest MOE, MOR and work to maximum load values (15.3 GPa, 54.2 MPa and 25.4 KJ/m3, respectively), while those treated with 10 percent MF had the highest internal bond and edgewise toughness values of 390 kPa and 12 N•m, respectively. With respect to dimensional stability, samples treated with 20 percent FA had the lowest swelling value (ASE = 36.8 percent), and the lowest water absorption value (27.5 percent). Dynamic swelling test revealed much higher ASE value (> 45 percent) for furfurylated samples. As for termite resistance, both untreated and treated samples had little weight loss (1.10-1.56 percent), high visual rating (8-9.3/10), and 100 percent mortality in laboratory test.

This research took place in 3 stages. In the first stage, lignin graphene (LG) was synthesized using a catalytic thermal conversion process. In stage 2, the time and temperature correlations for polyvinyl acetate (PVAc) and phenol resorcinol formaldehyde (PRF) adhesives were found and PRF showed stronger correlation when doped with carbon nanomaterials. Stage 3 evaluated the effect of the nanomaterials on radio frequency (RF) heating time and adhesive strength. It was found that all versions of the PRF adhesive resulted in higher shear strength values when cured in room temperature for 24 hours or in an oven at 170 °F for 30 minutes. The combination of PRF + 0.5 % LG and 120 s RF heating resulted in significantly higher block shear strengths when compared to the other RF heating durations. Pine lumber was selected as it is the single most important commercial/structural species in North America, by volume. A substantial portion of pine is directed to glue-laminated timber and cross-laminated timber. Both industries use or can use RF curing and as such both may benefit from improvements developed herein.