The invasibility, or susceptibility of an ecosystem to biological invasion is influenced by changes in biotic and abiotic resistance often due to shifts in disturbance regime. The magnitude of invasive propagule pressure interacts with an ecosystem's invasibility to determine the extent of a biological invasion. I examined how propagule pressure, forest community structure and disturbance interact to influence the invasibility of temperate Pacific Northwest forests by the newly-invasive grass, Brachypodium sylvaticum. My goal was to identify which of these factors is most instrumental in enabling the shift from establishment to population growth in B. sylvaticum at the edge of its expanding range. Both observational and experimental studies were employed to identify the many ecological components of this problem. Ecological sampling methods were used to identify trends in B. sylvaticum habitat preference and signs of habitat disturbance. In addition, an experimental study was performed to test the effects of soil and vegetation disturbance on B. sylvaticum seedling propagation. I found that while soil disturbance did not have a significant effect on seedling propagation, vegetation disturbance was implicated in B. sylvaticum spread. Higher propagule pressure and coniferous forest type were also strong predictors of increased B. sylvaticum seedling propagation and survival within established sites. My study demonstrates how propagule pressure and plant community dynamics interact to shift the invasibility of Pacific Northwest forests and facilitate the transition from establishment to spread in the invasion of B. sylvaticum.

Invasive species degrade ecosystems by altering natural processes and decreasing the abundance and diversity of native flora. Communities with major fluctuations in resource supply allow invasive species to exploit limiting resources making the community prone to invasion. In the Pacific Northwest, urban forests characterized with limited light and seasonally limited soil moisture are being dominated by nonnative English ivy (Hedera spp). Three observational studies were conducted in the Southern end of Forest Park within the Balch Creek Subwatershed in Portland, Oregon in order to understand 1) how English ivy changes over three growing seasons, 2) how the native understory composition responds to English ivy, 3) if the dominance of English ivy reduces soil moisture to neighboring plants, 4) how English ivy and two co-occurring native herbs (Hydrophyllum tenuipes and Vancouveria hexandra) physiologically respond to seasonal changes in soil moisture. Percent cover of the understory community was collected in both 2010 and 2013 growing seasons in 54 plots in order to understand the change in cover over time. Community response and the relationship with soil moisture was analyzed using percent cover of the understory community and associated environmental variables including soil moisture collected in 128 plots during the 2013 field season. Finally, 15 plots with co-occurring Hedera spp, H. tenuipes and V. hexandra were sampled for stomatal conductance, leaf water potential, and associated environmental variables. Results show ivy cover increases on average 14% between 2010 and 2013 while native understory cover increased on average < 1%. Once ivy forms dense cover over 44% there is a reduction of native richness, diversity and herb cover while also an increase in available soil moisture and deciduous canopy cover. There were disparate impacts to different functional groups and between species. As functional group, the herbaceous community was the most impacted by ivy invasion. The shrubs and fern community had a variable response to ivy invasion. Many of the fern and shrub species least impacted by ivy also had associations with high soil moisture and deciduous canopy cover. Finally, data suggests that ivy does not take advantage of seasonally limiting soil moisture to invade the understory community. This study indicates that English ivy is both efficient at water use and may have the ability to obtain water from distant locations throughout the forest. Once established, ivy has the ability to alter the community composition. Ivy removal and habitat restoration are essential in order to maintain and enhance biodiversity in Forest Park.

This study consisted of two research projects in the Wyoming big sagebrush (Artemisia tridentata ssp. wyomingensis (Beetle & A. Young) S.L. Welsh) alliance, the most extensive of the big sagebrush complex in the Intermountain West. In the first project, we intensively sampled 107 relatively undisturbed, late seral Wyoming big sagebrush sites across the High Desert, Humboldt, and western Snake River Ecological Provinces to investigate vegetation heterogeneity and the relationship of environmental factors with vegetation characteristics. Vegetation characteristics were highly variable across the region. Perennial grass and total herbaceous cover varied more than six and sevenfold, respectively between minimum and maximum values. Sagebrush cover averaged 12%, but ranged between 3 and 25%. With the exception of perennial grass cover (p<0.0001, r²=0.52), limited variability in other vegetation characteristics was explained by environmental variables. In the second project, we investigated the functional role of Wyoming big sagebrush by using undisturbed and sagebrush removed (with burning) treatments and comparing vegetation and microsite characteristics under (subcanopy) to between sagebrush canopy (interspace) zones. Wyoming big sagebrush influenced associated vegetation and microsites. On sites receiving high incidental radiation, perennial grass and total herbaceous cover and density were greater in the subcanopy than interspace zones (p<0.05). On north aspects, these differences were not as pronounced suggesting sagebrush's influence on associated vegetation is site dependent. Temperature extremes were mediated and soil water content was greater in the subcanopy than interspace zones during the growing season. Results indicated that the subcanopy zone can be a more favorable environment to herbaceous vegetation than the interspace zone. Wyoming big sagebrush is important to community resource capture and use. Plots with sagebrush had greater soil water content at the start of the growing season and produced more total biomass compared to where sagebrush had been removed in both post-fire years (p<0.05). However, higher Thurber's needlegrass photosynthetic rates and greater herbaceous cover and production where sagebrush had been removed suggested that more resources were available to herbaceous vegetation in the absence of sagebrush. / Graduation date: 2006

In river ecology the description and understanding of near-natural ecosystem functionality is a difficult task to achieve as the majority of river floodplains have been intensively impacted by human activities. This work addresses ecological functionality of a relatively unimpacted large river system, focussing on the lateral dynamic and connectivity mechanisms driving aquatic vegetation processes. Macrophytes were found to be very patchily distributed at the riverscape scale, being mainly confined to low energy lateral habitats in the floodplain, such as backwaters. Backwaters provided favourable conditions for plants to colonise and recruit and contributed highly to species diversity and productivity at the floodplain scale. Differences between backwaters were attributed to the frequency of connectivity with the main channel during flood events. Nevertheless, the ecological mechanism driving diversity through flooding appears not to be related to flow disturbance. Biomass produced in backwaters was found to remain stable after potentially scouring floods. Therefore the hypothesis that flood disturbances promote species diversity through the removal and destruction of biomass and rejuvenate communities such that species coexistence is increased was rejected. Rather, it appears that diversity in backwaters increases along a temporal gradient as a response to the input of colonists and their accumulation overtime through successive flood inputs. Despite the apparently non-destructive effect of floods on macrophyte biomass, backwaters appear to have a significant role in exporting large amounts of plant propagules from the site of production. Backwaters represented a net source of propagules which highly enriched the main channel pool of potential colonists. However, whereas propagules could be dispersed for long distances in flood flows the probability for them to reach a suitable downstream habitat was extremely low. This work showed that dispersal at baseflow and entry to backwaters through the downstream end after short dispersal drift provided a greater chance of successful colonisation despite the individually much shorter distance moved. Backwaters were demonstrated to be rather isolated aquatic habitats, even though they experience hydrological connectivity, suggesting that primary colonisation of these sites is a limiting step. Instead, colonisation was shown to rely primarily on propagules generated internally by established plants. Whereas colonisation could occur via internal re-organisation of existing plant propagules, the backwater seed bank could also contribute to the macrophytes species established in backwaters. Such contribution was consistently low to medium along a gradient of disturbances and connectivity and showed independence from such river flow processes. Species richness was found to be higher in the established species than in the seed bank, suggesting that asexual reproduction is prioritised by aquatic vegetation in riverine backwaters. The occurrence or persistence of macrophyte species in backwaters depends upon rhizome and plant shoot regeneration. The lack of influence of connectivity revealed that plants may originate from both in situ and externally waterborne vegetative propagules derived from other upstream backwaters. This research demonstrated that the lateral dynamic and associated connectivity are major components of river floodplain ecology which generate a wide spectrum of habitats and have a controlling effect on vegetation processes. Therefore a naturally dynamic ecological state is required to support ecosystem functionality in large river floodplains and especially to maintain a high level of species diversity, productivity and colonisation of backwaters by macrophytes.

The vast majority of terrestrial plant species live in symbiosis with arbuscular mycorrhizal fungi (AMF). AMF and plants live in complex networks, with roots of individual plants hosting multiple AMF, and single AMF colonizing multiple plants concurrently. Through the exchange of resources, the two partners of this symbiosis can have great effects on each other, effects which can ripple through both communities. What determines the patterns of associations between the partners is still largely unknown. In this dissertation, I examine a variety of factors, and in particular host identity, that could drive the community composition of AMF in roots. I began by surveying the diversity of AMF in roots of 12 plant species at a remnant bunchgrass prairie in Oregon, U.S.A. (Chapter 2). To do that, I first designed new primers for use in polymerase chain reaction (PCR) to specifically amplify DNA from all Glomeromycota species. Using those primers, I found 36 distinct AMF phylogenetic groups, or operational taxonomic units (OTUs) in the roots from the prairie. The proportion of OTUs in the basal order Archaeosporales was greater than in many other environmental surveys. I also conducted an in silico analysis to predict how effectively previously published primers would detect the whole diversity of OTUs I detected. I then assayed AMF community composition in the roots of 50 plants from nine plant species (Chapter 3). To do that, I designed primers specific to 18 of the OTUs detected in the initial field survey and used them to test for the presence of each OTU in the roots individual plants. I used that data to test if AMF community composition in individual roots correlated with host identity, spatial distribution, or soil characteristics. I found host identity was associated with both the richness and the structure of root AMF communities, while spatial distribution and soil characteristics were not. Finally, I performed an experimental test of the effect of host identity and community context on AMF community assembly (Chapter 4). I grew plants from four native perennial plant species, including two common and two federally endangered plants, either individually or in a community of four plants (with one plant of each species). I analyzed the AMF community composition in the roots of all plants after 12 weeks of growth with exposure to a uniform mix of field soil as inoculum. I found that host species identity affected root AMF richness and community composition, and community context affected AMF richness. Only one of the endangered species was highly colonized by AMF, and I did not detect unique AMF communities associated with it. This dissertation provides information on the diversity of AMF at a remnant bunchgrass prairie, an ecosystem which has been the subject of very few studies of AMF. Although a complex mix of factors interact to determine AMF community composition in roots, this work provides strong evidence that host identity plays a major role in that process. / Graduation date: 2013

Thesis (DSc)--Stellenbosch University, 2008. / ENGLISH ABSTRACT: No abstract available / AFRIKAANSE OPSOMMING: Geen opsomming beskikbaar

The Kafue Flats floodplain wetland system in southern Zambia is under increasing climate and human pressures. Firstly, drought episodes appear more prevalent in recent years in the region and secondly, two dams were built on the lower and upper ends of the wetland in 1972 and 1978, respectively, across the Kafue River which flows through the wetland. The study uses multi-temporal remote sensing to assess change in extent and vigour of green vegetation, and extent of water bodies and dry land cover on the Kafue Flats. The change detection's management value is assessed. Four normalised, co-registered digital Landsat images from 24 September 1984, 3 September 1988, 12 September 1991 and 20 September 1994 were used. The main change detection method used was comparison of classifications, supplemented by Normalised Difference Vegetation Index (NDVI) and Principal Component Analysis (PCA) change detection. Ancillary land use and environmental data were used in interpreting the change in the context of cause and effect. The results indicate inconsistent trends in the changes of most land cover classes, as a result of manipulation of the wetland by man through annual variations in the timing and magnitude of regulated flows into the wetland, as well as burning. However, the results also show spatial reduction in the wetland's dry season dense green reed-grass vegetation in upstream sections which are not affected by the water backing-up above of the lower dam. Sparse green vegetation is replacing the dense green vegetation in these upstream areas. It is inferred that this dry season degradation of the wetland threatens bird species which may use the reeds for dry season nesting. It is proposed that ground surveying and monitoring work at the micro-habitat level is necessary to ascertain the implications of the losses. It is concluded that, in spite of difficulties, multi-temporal remote sensing has a potential role in wetland change assessment on the Kafue Flats at the community level, but that it needs to be supplemented by targeted, micro-habitat level ground surveys.

Graduation date: 2006 / Canopy gap formation is a major factor contributing to maintenance of overstory species diversity and stand structure in forests and may be integral to development of understory shrub and herb layers as well. Acknowledgement of gap formation as a fundamental feature of natural forests has led to consideration of gaps as an option in forest management regimes. This study examined understory vegetation communities across canopy gaps created as a part of the Density Management Study (DMS), which investigates the effectiveness of a thinning regime in promoting late-successional habitat development in young Douglas-fir forests of western Oregon. Patterns in understory vegetation community composition in and around 0.1 and 0.4ha gaps created as a part of the DMS treatment were investigated. The primary goal of this research was to investigate the potential role of canopy gap creation in fostering heterogeneity in understory vegetation communities, and to examine the extent of gap influence on the surrounding thinned forest matrix. Tree species distributions have been shown to partition across gaps in tropical forest systems through differential responses of species to gradients in resource availability, a pattern known as gap partitioning. In temperate forests, understory vegetation communities are much more diverse than the overstories, and display a greater array of habitat requirements. Therefore, understory communities may be more likely than overstories to exhibit gap partitioning in these forests. Patterns in understory community composition across gaps suggest that gap partitioning has occurred. The strength of this partitioning effect appears to differ between gap sizes, as smaller gaps showed a less powerful effect. Abundance of ruderal species was strongly related to gap partitioning in larger gaps, while smaller gaps were dominated by competitor species. Partitioning may be related to an interactive relationship between harvest-related ground disturbance and resource gradients. Therefore, considerations of gap partitioning processes should take into account intensity and spatial distribution of ground disturbance in relation to resource gradients. In addition, conditions necessary for the expression of gap partitioning in understory vegetation communities may be rare in natural gaps in this region. The influence of gaps on understory vegetation communities in the surrounding forest appears to be relatively small. This small influence extent may help explain the lack of a stand level response to gap formation in these stands. Larger gaps exhibit a slight influence on the understory plant community in the surrounding forest to the north of the gap. In small gaps, there seemed to be an influence of the surrounding forest on gap interiors, resulting in an area of influence smaller than the physical gap area. This relationship may indicate that the area of gap influence on understory vegetation may not scale linearly with physical gap size. Species diversity was higher in gap interiors than in surrounding thinned forests. However this effect was partially due to the presence of exotic species, which showed an affinity for gap interiors. Late successional associated species were negatively related to gap interiors, but only in the larger gap size. Gap creation appears to be promoting small scale species diversity in these stands, but creation of large gaps may also promote the establishment of exotic species and may have a negative effect on late successional associated species. However, any and all of these effects may be transient, as understory communities will be strongly affected by overstory re-establishment, and related changes in resource availability. In general, gap formation may influence small-scale stand heterogeneity as evidenced by understory plant communities, but this effect may rely strongly on the nature of gap formation and intensity of disturbance related to this formation.

Thesis (Ph. D.)--University of Hawaii at Manoa, 2004. / Includes bibliographical references. / Also available by subscription via World Wide Web / xiv, 177 leaves, bound ill., maps 29 cm

Macrophytes are an integral component of lake littoral zones and play an irreplaceable role in maintaining the ecological balance of wetlands. Recent research has highlighted the role of lake-scale environmental factors (or “filters”) and catchment- and/or landscape-scale processes in explaining variation in macrophyte communities across different scales. In this work, the effects of land-use and connectivity on macrophyte communities were explored at two contrasting spatial scales (i.e. local catchment scale and topographic catchment scale). At the local catchment scale, the results revealed strong scale-dependency. The effects of land use on macrophyte richness were most apparent at fine spatial scales (within 0.5 to 1 km) and significantly outweighed the importance of hydrology. In terms of growth form composition, the effects of hydrological connectivity were stronger than those of land use, with the greatest effect observed at an intermediate distance (~ 5 km) from the lake. The study on the hydrologically-connected lake pairs indicated that environmental filters were more influential in explaining species turnover than lake connectivity. Interestingly, geographical connectivity explained more of the variability in species turnover than hydrological connectivity. Moreover, the relative importance of environmental filters and lake connectivity to species turnover was very sensitive to the degree of human disturbance. The multi-scale interaction analyses indicated the effect of lake alkalinity on macrophyte composition is strongly influenced by catchment scale variables including hydrological features and land use intensity. The turnover in macrophyte composition in response to variability in alkalinity was stronger in catchments with low lake and stream density and weaker in catchments with a more highly developed hydrological network. Lake abiotic variables were found to have more influence on macrophyte composition in lowland catchments with a higher intensity of human disturbance. Moreover, the catchment-scale factors promoting the establishment of different communities were found to vary between catchments depending on lake type, the degree of environmental heterogeneity and hydrological connectivity.