Introduction: Assessing brain maturation in preterm neonates is essential for the health of the neonates. Machine learning methods have been introduced as a prospective assessment tool for neonatal electroencephalogram(EEG) signals. Explainable methods are essential in the medical field, and more research regarding explainability is needed in the field of using machine learning for neonatal EEG analysis. Methodology: This thesis develops an explainable machine learning model that estimates postmenstrual age in very preterm neonates from EEG signals and investigates the importance of the features used in the model. Dual-channel EEG signals had been collected from 14 healthy preterm neonates of postmenstrual age spanning 25 to 32 weeks. The signals were converted to amplitude-integrated EEG (aEEG) and a list of features was extracted from the signals. A regression tree model was developed and the feature importance of the model was assessed using permutation importance and Shapley additive explanations. Results: The model had an RMSE of 1.73 weeks (R2=0.45, PCC=0.676). The best feature was the mean amplitude of the lower envelope of the signal, followed by signal time spent over 100 µV. Conclusion: The model is performing comparably to human experts, and as it can be improved in multiple ways, this result indicates a promising outlook for explainable machine learning model applications in neonatal EEG analysis.

Design and development / Respiratory distress syndrome (RDS) is a major cause of mortality and long-term morbidity annually affecting 14% preterm infants worldwide. Therapies have been developed to overcome this common disorder; however, limitations exist with these treatments that often lead to complications including bronchopulmonary dysplasia (BPD). One approach to address RDS is to implement a microfluidic oxygenator that serves as a respiratory support system for preterm neonates while the lungs fully develop, extra-uterine. This artificial lung assist device (LAD) is characterised by its non-invasiveness (given that it is connected via umbilical vessels), pumpless configuration, ambient air operation, portability and low priming volume. Furthermore, the LAD is formed by single oxygenator units (SOU) that are stacked in a parallel array which allows for usage on different body weights. The objective of this thesis is to design an electrochemical system to provide an in-situ enriched O2 environment able to supply 1.9 ml O2/min for use in the SOU while maintaining the simplicity of operation of the oxygenator. An inexpensive, electrically powered and compact device was envisioned allowing for a higher permeation flux to fully oxygenate the blood. Moreover, the system would be easy to manufacture, low maintenance and avoid the risk of gas contamination. In the initial work, different designs of electrolytic cells were developed and tested. The two- chamber design connected by a gel membrane showed an O2 production 10 times higher than with previous designs with 42 mg O2/L. Subsequently, different supporting electrolytes were tested. NaOH demonstrated a better performance and no degradation of the electrode in contrast to NaCl and Na2SO4. Stainless steel mesh (SSM) and graphite sheet electrodes were then tested; it was observed that stainless steel produced 3.4 times more dissolved oxygen (DO) than graphite with 28.3 mg O2/L. Experimentation with electrolysis of water showed that the DO in water reached stability 3 min after the electrolysis process was initiated measuring a change of DO of 29 mg/L at 3 A. Furthermore, an active oxygenation (AO) system was developed for in-vitro experiments via electrolysis of water and compared to a passive oxygenation (PO) system exposing blood to enriched O2 air and ambient air, respectively. It was demonstrated that AO provided 300% greater oxygenation to blood than PO. The electrolysis chamber designed for the microfluidic oxygenator allows the oxygenator to maintain its essential characteristics of simplicity and low cost while increasing the rate of oxygenation of blood. Preterm neonates suffering from RDS need an artificial lung that can partially support the oxygenation of their blood. Thus, combining the oxygenator with the O2 generation in-situ system enables a greater blood O2 uptake of 300% making possible the development of an efficient artificial lung. / Thesis / Master of Applied Science (MASc)

The preterm delivery (<37 weeks gestation) rates are generally 5-9% in Europe, 12-13% in the US, and each year about 13 millions preterm infants are born worldwide (MacDorman and Mathews, 2009; Slattery and Morrison, 2002). The early exposure to the extra-uterine environment increases the risks of perinatal brain injury, involving more often the white matter. The white matter injury is characterized by a potential subsequent occurrence of cognitive problems, of developmental delay and of major motor deficits (e.g. cerebral palsy). <p>The most widely used imaging technique for studying neonatal brain is cranial ultrasound that can be performed at bedside and detects major brain abnormalities (hemorrhage, infarctions, cysts, dilatation of the lateral ventricles). However, it has a poor sensitivity for non-cystic or diffuse white matter abnormalities (WMA), the most common form of white matter injury in preterm infants. In comparison to ultrasound, MR (magnetic resonance) imaging has been reported to be superior in detecting WMA and is considered as an essential modality for imaging the neonatal brain. The standard sequences (e.g. T1-, T2-weighted imaging) are routinely performed for assessing not only brain anatomy, but also for evaluating brain lesions. Nevertheless, ¡§conventional MR imaging¡¨ has been criticized because it is limited in qualitative assessment and it does not provide information on the extent of specific white matter pathways injuries. <p>Currently, diffusion tensor imaging (DTI) enables more detailed exploration of white matter microstructure. Furthermore, DTI is now the best in vivo technique capable of delineating white matter pathways and quantifying microstructural changes not visible on conventional MR imaging. Diffusion tensor tractography allows the reconstruction of the principal white matter fibers. Moreover, it also provides diffusion indices like fractional anisotropy (FA), mean diffusivity (MD), longitudinal diffusivity (£f//), transverse diffusivity (£f¢r) that help assess the changes in fiber tracts, even before myelination becomes histologically evident. <p>Structural MR imaging studies performed in neonates are scarce. A number of essential questions are still under debate, concerning the normal white matter structure, as well as premature brain injury. First, left language lateralization and right handedness are complex phenomena incompletely understood and the question rises whether structural lateralization already exist in healthy preterm neonates at term-equivalent age. Second, it is of interest to know whether gender-related structural differences exist in healthy preterm neonates. Finally, in the assessment of preterm brain injury, the relationship between WMA on conventional imaging and altered diffusion indices in fiber tracts is still unclear. Therefore, the aims of the thesis were to investigate the brain structure in a population of preterm neonates at term-equivalent age by DTI and probabilistic tractography.<p>The first part of this thesis (Study I and Study II) was devoted to the study of white matter structural characteristics in healthy preterm neonates. Previous studies have shown that structural asymmetries in language and motor related fibers are present in adults and in infants (Dubois et al. 2009; Westerhausen et al. 2007). Our hypothesis was that these structural asymmetries are already present in preterm neonates at term-equivalent age. In Study I, DTI and probabilistic tractography were performed and we found volume and microstructural asymmetries in the language related parieto-temporal superior longitudinal fasciculi (SLF), in the motor related corticospinal tract (CST) and in the motor part of the superior thalamic radiation (STR) as well. In Study II, we found that compared to boys, girls have larger relative tract volumes and an advanced maturation in language and motor related fiber tracts. <p>The second part of this thesis (Study III) investigated whether WMA on conventional MR imaging are related to abnormalities within the fiber tract microstructures. WMA were classified as normal, mild, moderate and severe according to Woodward¡¦s classification (Woodward et al. 2006). Woodward and colleagues studied a large population (167 infants) of preterm infants at term equivalent age with MRI. They demonstrated that WMA were important predictors of neurological outcomes by comparing their results with the neurological outcomes of those infants at corrected age of two. We found that compared to neonates with no abnormalities, infants with mild abnormalities have significantly higher ƒÜ¢r in the right CST, the left anterior thalamic radiation (ATR), the left sensory STR and bilateral motor STR. Those findings might be related to injuries of premyelinating oligodendrocytes resulting in subsequent failure of both development and ensheathment of axons. Considering that those fiber tracts connect important cortical zones, microstructural changes in those fiber tracts might be responsible for the later neurodevelopment deficits in motor and cognitive functions. <p>We concluded that structural asymmetries and gender differences in motor and language related fibers are present in healthy preterm neonates at term-equivalent age well before the development of speech and hand preference. Structural asymmetries and gender differences have to be considered in neonatal white matter assessment. Finally, altered DTI indices are associated with WMA on conventional MR imaging in preterm neonates. Our results suggest that disrupted premyelination is the major correlate with WMA rather than axonal pathology. Non-invasive DTI and tractography constitute an additional tool for the assessment of white matter injuries, as it could provide more adequate diagnostic information on brain microstructure in preterm neonates at term-equivalent age. / Doctorat en Sciences médicales / info:eu-repo/semantics/nonPublished

Le cadre neuroconstructiviste du développement cognitif, en considérant la variabilité des contraintes qui agissent dès la conception et façonnent le développement, apparaît pertinent pour considérer l’influence des expériences sensorielles précoces sur le développement neurocomportemental des nouveau-nés prématurés. Ils évoluent dans un environnement particulier et ont une vulnérabilité aux troubles neurodéveloppementaux, auxquels des atypies du traitement tactile et temporel sont associées. L’objectif de ce travail de thèse est d’étudier les compétences tactiles et temporelles des nouveaux nés prématurés, et d’évaluer l’effet de l’environnement précoce sur ces perceptions. La perception tactile passive et la cognition ont été étudié auprès de 61 nouveau-nés prématurés (nés entre 32 et 34SA) à 35 semaines d’âge corrigé. Les réponses d’orientation manuelle lors de stimulations tactiles passives du membre supérieur ont été mesurées lors d'un paradigme d’habituation et de déshabituation (changement de localisation ou pause dans la séquence de stimulation). Les prématurés montrent une réponse d'orientation manuelle aux stimuli, qui diminue lors de la répétition, indépendamment de son emplacement sur le bras. L'habituation est retardée chez les sujets nés le plus tôt, à un petit poids et ayant vécu davantage d’expériences douloureuses. Enfin, les prématurés perçoivent les changements de localisation du stimulus et l'intervalle interstimulus, ce qui suggère un développement prénatal des capacités de traitement temporel. Ces capacités de traitement temporel et leur utilisation pour générer une prédiction sensorielle ont été évaluées au cours d’une seconde étude. 19 nouveau-nés prématurés (nés entre 31 et 32 SA) ont été soumis à une séquence tactile (régulière ou irrégulière) aux âges corrigés de 33 et 35 SA. Les variations de flux sanguin cérébral été mesurées. Aux deux âges corrigés, les stimuli tactiles sont associés à une réponse hémodynamique au sein du cortex somatosensoriel. À 33 semaines d’âge gestationnel corrigé les omissions dans la séquence sont associées à une augmentation du flux sanguin cérébral, qui indique que les prématurés forment des prédictions sensorielles, indépendamment du groupe expérimental. Ce travail de thèse permet de mieux caractériser les capacités de traitement tactile et temporel des nouveau-nés prématurés, qui manquent d’investigations récentes et approfondies. De plus, il apporte des arguments rationnels qui pourraient permettre de proposer des thérapies sensorielles à ces patients, basées sur leurs capacités de perception. / The neuroconstructivist theoretical framework of cognitive development, taking into account the variability of the constraints that act from the conception to shape development, is relevant to consider the early influence of sensory experiences on the neurobehavioral development of preterm neonates. They evolve in a particular environment and are vulnerable to neurodevelopmental disorders, to which atypical tactile and temporal processing are associated. The aim of the thesis is to study tactile and temporal abilities in preterm newborns and to evaluate the effect of the early environment on these perceptions. We included 61 preterm neonates (born between 32 and 34 weeks of gestational age (wGA)). At 35 weeks of corrected gestational age, we measured orienting responses (forearm, hand, and fingers movements) during vibrotactile stimulation of their hand and forearm, during a habituation and dishabituation paradigm, the dishabituation being either a location change or a pause in the stimulation sequence. Preterm newborns displayed a manual orienting response to vibrotactile stimuli which significantly decreased when the stimulus was repeated, regardless of the stimulated location on the limb. Habituation was delayed in subjects born at a younger gestational age, smaller birth weight, and having experienced more painful care procedures. Preterm neonates perceived changes in stimulus location and interstimulus time interval, suggesting a prenatal development of temporal processing capacities. These temporal processing abilities and their use to generate sensory prediction are being evaluated in a second study. 19 premature neonates (born between 31 and 32wGA) were presented with a tactile sequence (regular or irregular) at 33 and 35 weeks of corrected GA. Variations in cerebral blood flow were measured. At both corrected GA, tactile stimuli are associated with a hemodynamic response in the primary somatosensory cortex. At 33 weeks of corrected GA, omissions in the sequence are associated with an increase in cerebral blood flow, which indicates that premature neonates form sensory predictions, regardless of their experimental group. This thesis work allows to better characterize the tactile and temporal processing abilities in premature neonates, which lack recent and thorough investigation. In addition, it provides rational arguments that could help to propose sensory therapies to these patients, based on their perceptual abilities.