In this thesis, we investigate the quantum mechanical interaction of light with matter in the form of a gas of ultracold atoms: the atomic ensemble. We present a theoretical analysis of two problems, which involve the interaction of quantized electromagnetic fields (called signal and idler) with the atomic ensemble (i) cascade two-photon emission in an atomic ladder configuration, and (ii) photon frequency conversion in an atomic diamond configuration. The motivation of these studies comes from potential applications in long-distance quantum communication where it is desirable to generate quantum correlations between telecommunication wavelength light fields and ground level atomic coherences. In the two systems of interest, the light field produced in the upper arm of an atomic Rb level scheme is chosen to lie in the telecom window. The other field, resonant on a ground level transition, is in the near-infrared region of the spectrum. Telecom light is useful as it minimizes losses in the optical fiber transmission links of any two long-distance quantum communication device. We develop a theory of correlated signal-idler pair correlation. The analysis is complicated by the possible generation of multiple excitations in the atomic ensemble. An analytical treatment is given in the limit of a single excitation assuming adiabatic laser excitations. The analysis predicts superradiant timescales in the idler emission in agreement with experimental observation. To relax the restriction of a single excitation, we develop a different theory of cascade emission, which is solved by numerical simulation of classical stochastic differential equation using the theory of open quantum systems. The simulations are in good qualitative agreement with the analytical theory of superradiant timescales. We further analyze the feasibility of this two-photn source to realize the DLCZ protocol of the quantum repeater communication system. We provide a quantum theory of near-infrared to telecom wavelength conversion in the diamond configuration. The system provides a crucial part of a quantum-repeater memory element, which enables a "stored" near-infrared photon to be converted to a telecom wavelength for transmission without the destruction of light-atom quantum correlation. We calculate the theoretical conversion efficiency, analyzing the role of optical depth of the ensemble, pulse length, and quantum fluctuations on the process.

This thesis presents the investigations of Rubidium atoms in magneto-optical traps and triply charged Thorium ions in electrodynamic traps for future advances in long-distance quantum telecommunication, next generation clocks, and fundamental tests of current physical theories. Experimental realizations of two core building blocks of a quantum repeater are described: a multiplexed quantum memory and a telecom interface for long-lived quantum memories. A color change of single-photon level light fields by several hundred nanometers in an optically thick cold gas is demonstrated, while preserving quantum entanglement with a remotely stored matter excitation. These are essential elements for long-distance quantum telecommunication, fundamental tests of quantum mechanics, and applications in secure communication and computation. The first trapping and laser cooling of Thorium-229 ions are described. Thorium-229 nuclear electric quadrupole moment is revealed by hyperfine spectroscopy of triply charged Thorium-229 ions. A system to search for the isomer nuclear transition in Thorium-229 is developed and tested with the excitation of a forbidden electronic transition at 717 nm. Direct excitation of the nuclear transition with laser light would allow for an extremely accurate clock and a sensitive test bed for variations of fundamental physical constants, including the fine structure constant.