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Severe weather events frequently affect important marine fish stocks and fisheries along the United States Atlantic and Gulf of Mexico coasts. However, the effects of these events on fish and fisheries are not well understood. The availability of self-reported data from two fisheries in a region frequently affected by tropical cyclones provided a unique opportunity to investigate short-term responses to past events. This study involved selecting severe weather events, calculating changes in effort and catch-per-unit- effort (CPUE), and analyzing those changes across various temporal, spatial, and species-specific scenarios. Responses in each variable were analyzed within and across scenario factors and explored for correlations and linear multivariate relationships with hypothesized explanatory variables. A negative overall directional change was identified for logbook fishing effort. Based on both correlations and linear models, changes in logbook fishing effort were inversely related to changes in average maximum wind speed. Severe weather events are more likely to affect fishing effort than catch rates of reef-fish species. However, lack of responses in CPUE may also relate to the ability of this study to detect changes. The temporal and spatial scales analyzed in this study may not have been adequate for identifying changes in effort for the headboat fishery, or in CPUE for either fishery. Although there was no region-wide response in CPUE associated with severe weather events, further research on this topic is necessary to determine if storm-induced changes in fishery data are likely strong, long-lasting, or widespread enough to influence the outcome of stock-wide assessments. / Master of Science

published_or_final_version / Ecology and Biodiversity / Doctoral / Doctor of Philosophy

Mesophotic reefs represent biodiverse ecosystems that may act as a refuge for depth-generalist coral species threatened in shallow habitats. Despite the importance of coral-algal symbioses, few studies focus on mesophotic zooxanthellae assemblages and their influence on connectivity. This study compared zooxanthellae in Montastraea cavernosa at shallow and mesophotic depths at Flower Garden Banks National Marine Sanctuary and McGrail Bank. Mesophotic corals contained more zooxanthellae and more chlorophyll a and c2 per unit area coral. Increased zooxanthellae within mesophotic corals may represent an adaptive strategy to optimize light capture in low-light environments. Genetic profiles for zooxanthellae assemblages from shallow and mesophotic corals showed similar diversity across banks and between depths. The dominant sequence making up assemblages was identified as Symbiodinium type C1. Similar assemblage diversity suggests that zooxanthellae assemblages will not limit connectivity potential between shallow and mesophotic corals at these reefs. / Includes bibliography. / Thesis (M.S.)--Florida Atlantic University, 2016. / FAU Electronic Theses and Dissertations Collection

Coral reefs worldwide are threatened by many environmental disturbances including harmful algal blooms (HABs) which have been increasing on Florida coasts over the past decade. Research has mainly focused on HAB identification, percent cover and other effects on the benthos but the relationship of HABs with upper trophic levels has received less attention. To study this relationship, a two-year investigation on a 10-m deep reef off of Hallandale Beach, was conducted. Stationary fish census coupled with benthic transect videos were conducted quarterly between April 2005-July 2007. A significant correlation between Lyngbya sp. blooms and alterations in fish assemblages was observed. Lyngbya had a negative interaction with fish species and abundance; additionally, HAB sample periods were significantly different from low algal abundance periods. Blooms of Dictyota sp. had no measurable relationship with the fish assemblage indicating HABs may have variable impacts on fishes depending on family, species and chemistry of the algae. / by Rex E. Baumberger, Jr. / Thesis (M.S.)--Florida Atlantic University, 2008. / Includes bibliography. / Electronic reproduction. Boca Raton, Fla., 2008. Mode of access: World Wide Web.