No description available.

Understanding the dynamics of open marine populations is difficult. Ecological processes may vary with the spatial structure of the habitat, and this variation may subsequently affect demographic rates. In a series of observational and experimental studies in the Bahamas, I examined the roles of emigration, mortality, and predation in the local population dynamics of juvenile coral-reef fishes. First, I documented mortality and emigration rates in populations of bluehead and yellowhead wrasse. Assuming that all losses were due solely to mortality would have significantly underestimated survivorship for both species on patch reefs, and for yellowheads on continuous reefs. Mortality differed between species, but emigration did not differ between species or reef types. Mortality of blueheads was density-dependent with respect to both conspecific density and total wrasse density on continuous reefs. In contrast, mortality of yellowheads varied inversely with the density of blueheads on patch reefs. Emigration rates varied inversely with distance to the nearest reef inhabited by conspecifics. In subsequent experiments, I manipulated densities of yellowhead wrasse and beaugregory damselfish, and determined that the relationship between density and mortality varied with reef spatial structure. On natural reefs, mortality rates of the wrasse were highly variable among reefs. On artificial reefs, mortality rates of both species were density-dependent on spatially isolated reefs, yet high and density-independent on aggregated reefs. Heterogeneity in the spatial structure of natural reefs likely caused variation in predation risk that resulted in high variability in mortality rates compared to artificial reefs. A final experiment demonstrated that a single resident predator caused substantial mortality of the damselfish, regardless of reef spacing. Patterns suggested that resident predators caused density-dependent mortality in their prey through a type 3 functional response on all reefs, but on aggregated reefs this density dependence was overwhelmed by high, density-independent mortality caused by transient predators. These results (1) suggest post-settlement movement should be better documented in reef-fish experiments, (2) demonstrate that the role of early post-settlement processes, such as predation, can be modified by the spatial structure of the habitat, and (3) have ramifications for the implementation of marine reserves. / Graduation date: 2004

Thesis (M.S.)--University of North Carolina at Wilmington, 2003. / Includes bibliographical references (leaves : 46-50).

Thesis (Ph.D.) -- McMaster University, 1998. / Includes bibliographical references (leaves 161-170). Also available via World Wide Web.

Thesis (M.A.)--University of Alberta, 2010. / Title from pdf file main screen (viewed July 27, 2010). "A thesis submitted to the Faculty of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Master of Arts, Dept. of Anthropology". Includes bibliographical references.

A detailed investigation into the life histories of Chrysoblephus laticeps and c. cristiceps in exploited and unexploited marine environments on the south-east coast of southern Africa is presented. The study provided information necessary for the evaluation of marine reserves as a management option for these and similar reef species. Visual underwater assessments showed a clear spatial separation between adults and juveniles of both species, suggesting a recruitment of juveniles into shallow water followed by a gradual outward migration into deeper water with age. Denslty estlmates of C. laticeps in the Noordhoek (0.0064 fish/m²) and Tsitslkamma (0.0254 fish/m²) areas were significantly different and were attributed to exploitation. Within area differences in density were also significantly correlated with temperature) depth and substratum relief. Similar comparisons for C. cristiceps were not possible because these fish shied away from divers. Habitat preferences were mirrored in the diets of both species which fed on a wide variety of reef associated benthic animals. Size of prey appeared to be gape limited, only larger fish being able to manipulate prey. Quantitative differences between the diets of fish sampled in different areas were a reflection of differences in available prey and not related to the relative density of predators. The dietary characteristics recorded in these fish were typical of search hunters. An age and growth study based on the examination of sectioned otoliths showed that both species were slow growing and long lived. Maximum recorded ages were 18 and 22 years for C. laticeps and C. cristiceps respectively. Growth rates in exploited and unexploited areas were not significantly different although there was an indication that growth was slower in the exploited areas for C. cristiceps. Several inconsistencies in otolith interpretation and terminology were evaluated. Contrary to other South African studies the results suggested that somatic growth was fastest just after spawning. This coincided with the winter months and was reflected by the deposition of a hyaline zone in the otolith. Two independent estimates, the Pauli derivation and visually assessed length frequency analysis, produced the same value for total mortality of C. laticeps in the Tsitsikamma area (0.2). This result, together with a significant difference in the rate of fishing mortality at different areas along the coast suggested that the populations sampled were discrete and supported the postulate that both species were sedentary. Further support was obtained from a mark-recapture study. Although sample numbers were low the results showed no evidence of large scale migratory patterns in these fish. An investigation of the reproductive biology of both fish showed that they were protogynous hermaphrodites, all males being derived from females with no evidence for polyandry. Males were shown to be capable of mating with a number of females and this, together with monandry, monochromatism and a small testis size, suggested a polygynous mating system in both species. Observations of the courtship behaviour in captive c. laticeps also supported polygyny. A significant difference in the mean size at sex reversal between unexploited and exploited populations supported the postulate that sex reversal was independent of the size or age of the animal. The size at which sex reversal occurred appeared to be dependent on sex ratio. A detailed yield per recruit analysis of the response of the population to different levels of fishing mortality and size at recruitment (t [subscript]r), showed that sex reversing species were particularly vulnerable to over fishing. This was due to a dramatic decline in the number of surviving individuals past t[subscript]r which resulted in a skewing of the sex ratio towards females. Evidence is presented to show that current legislation is inadequately protecting the spawner stock of both species. In conclusion it is shown that longevity, sex reversal, restricted movements and the occupation of a demersal habitat make these species particularly vulnerable to over exploitation in a size- selective fishery. The sustained yield in the linefishery is suggested to be a result of distant recruitment from relatively unexploited populations rather than the adequacy of current conservation measures. The need to protect the spawner stock is emphasised and the use of marine reserves as an additional protection for sedentary reef-dwelling species is therefore advocated.

Tsitsikamma National Park (TNP) possesses the oldest (established 1954), and one of the largest (350 km2) ‘no-take’ marine protected areas (MPA) in South Africa. A long-term monitoring (LTM) programme to observe the subtidal reef fishes in the TNP MPA was established in 2007. To date, 243 angling replicates have been completed, and a total of 2,751 fish belonging to 41 different species have been caught and released. In an era of unprecedented global biodiversity loss, data that can be used to monitor ecosystems and gauge changes in biodiversity through time are essential. This thesis aims to improve the methodological and statistical processes currently available for LTM of subtidal reef fish by providing an evaluation of the TNP MPA LTM programme. Angling data revealed definitive spatial structuring, in the form of spatial autocorrelation, and a shift in viewing spatial dependency as a statistical obstacle to a source of ecological information created a new avenue of data inference. Species-specific distribution maps identified localized habitat as the main predictor variable for species abundance, emphasizing the need for accurate a priori bathymetric information for subtidal monitoring. ‘Random forest’ analyses confirmed spatial variables are more important than temporal variables in predicting species abundance. The effectiveness of Generalized Linear Mixed Models (GAMMs) to account for spatial autocorrelation was highlighted, and evidence that disregarding spatial dependencies in temporal analyses can produce erroneous results was illustrated in the case of dageraad (Chrysoblephus cristiceps). Correlograms indicated that the current sampling strategy produced spatially redundant data and the sampling unit size (150 m2) could be doubled to optimize sampling. Temporal analyses demonstrated that after 50 years of ‘no take’ protection the TNP MPA ichthyofauna exhibits a high level of stability. Species-specific size structure was also found to be highly stable. Dageraad was the only species to exhibit a definitive temporal trend in their size structure, which was attributed to recruitment variation and the possibility that large individuals may migrate out of the study area. The inadequacy of angling as a method for monitoring a broad spectrum of the fish species was highlighted, particularly due to its selectivity towards large predators. As a result, a new sampling technique known as Stereo Baited Remote Underwater Videos (stereo-BRUVs) was introduced to the LTM programme in 2013. Stereo-BRUVs enabled sampling of 2640 fish belonging to 52 different species, from 57 samples collected in less than two years. A comparison of the sampling methods concluded that, compared to angling, stereo-BRUVs provide a superior technique that can survey a significantly larger proportion of the ichthyofauna with minimal length-selectivity biases. In addition, stereo-BRUVs possess a higher statistical power to detect changes in population abundance. However, a potential bias in the form of ‘hyperstability’ in sites with unusually high fish densities was identified as a possible flaw when using stereo-BRUVs. In an attempt to provide a more rigorous method evaluation, simulation testing was employed to assess the ability of angling and stereo-BRUVs to accurately describe a decreasing population. The advantage of this approach is that the simulated population abundances are known, so that each sampling method can be tested in terms of how well it tracks known abundance trends. The study established that stereo- BRUVs provided more accurate data when describing a distinct population decline of roman (Chrysoblephus laticeps) over 10- and 20-year periods. In addition, spawner-biomass was found to be a more accurate population estimate than relative abundance estimates (CPUE and MaxN) due to the inclusion of population size structure information, highlighting the importance of length-frequency data. The study illustrated that an evaluation framework that utilizes simulation testing has the potential to optimize LTM sampling procedures by addressing a number of methodological questions. This includes developing a procedure that aligns data collected from different sampling methods by applying correction factors, thus ensuring LTM programmes are able to adapt sampling strategies without losing data continuity.

The exceptional environment of the Red Sea has lead to high rates of endemism and biodiversity. Located at the periphery of the world’s coral reefs distribution, its relatively young reefs offer an ideal opportunity to study biogeography and underlying evolutionary and ecological triggers. Here, I provide baseline information on putative seasonal recruitment patterns of reef fishes along a cross shelf gradient at an inshore, mid-shelf, and shelf-edge reef in the central Saudi Arabian Red Sea. I propose a basic comparative model to resolve biogeographic patterns in endemic and cosmopolitan reef fishes. Therefore, I chose the genetically, biologically, and ecologically similar coral-dwelling damselfishes Dascyllus aruanus and D. marginatus as a model species-group. As a first step, basic information on the distribution, population structure, and genetic diversity is evaluated within and outside the Red Sea along most of their global distribution. Second, pelagic larval durations (PLDs) within the Red Sea environmental gradient are explored. For the aforementioned, PLDs of the only other Red Sea Dascyllus, D. trimaculatus, are included for a more comprehensive comparison. Third, to further assess ongoing pathways of connectivity and geneflow related to larval behavior and dispersal in Red Sea reef fishes, the genetic composition and kinship of a single recruitment cohort of D. aruanus arriving together at one single reef is quantified using single nuclear polymorphisms (SNPs). Genetic diversity and relatedness of the recruits are compared to that of the standing population at the settlement reef, providing insight into putative dispersal strategies and behavior of coral reef fish larvae. As a fourth component to study traits shaping biogeography, the ecology and adaptive potential of the cosmopolitan D. aruanus is described by studying morphometric-geometrics of the body structure in relation to the stomach content and prey type from specimen along the cross-shelf of the central Red Sea and at a site outside the Red Sea, in Madagascar, and approach whether foraging strategies change depending on geographic location and environment, and if differences in diet are followed by phenotypic plasticity. Jointly, results suggest that biological responses and putative adaptive strategies are correlated with different biogeographic ranges and habitat preferences.

This study conducted the first high-resolution investigation of the ichthyofaunal assemblages on a high-latitude coral reef in the Western Indian Ocean (WIO). Two-Mile reef, in South Africa, is a large, accessible patch-reef, and was selected as a candidate study area. Although the effect of season in structuring coral reef fish communities is most-often overlooked, the relationship between these fish communities and their habitat structure has been investigated. In South Africa, however, neither of these potential community-level drivers has been explored. As coral reefs worldwide are faced with high levels of usage pressure, nondestructive underwater visual census (UVC) techniques were identified as the most appropriate survey methods. This study had two primary aims that were; (1) to identify the most suitable technique for the UVC of coral reef fishes, and to test variations of the selected technique for appropriateness to implementation in long-term monitoring programs, and (2) to determine if possible changes to ichthyofaunal community structure could be related to trends in season and/or habitat characteristics. A review of the literature indicated that the most appropriate UVC method for surveying epibenthic coral reef fishes is underwater transecting. To compare the traditional slate-based transects to variations that implement digital image technology, slate transects were compared to a first-attempt digital photographic transect technique, and digital videographic transects. Videographic transects produced the most favourable species richness, abundance, and standard deviations of the three techniques. Diversity was not significantly different between transect techniques. The minimum required sample size was lowest for videographic transects (17 replicates), intermediate for photographic transects (27 replicates) and highest for slate transects (37 replicates). Videographic and photographic transects required greater analysis time to generate counts, but required lower observer training time. While videographic transects produced the lowest proportion of species considered unidentifiable, all three transect techniques showed similar functionality to surveying epibenthic coral reef fishes. Videographic transects were therefore identified as the most appropriate UVC technique for this study. Videographic transects at shallow (6 – 14 m), intermediate (14 – 22 m) and deep (22 – 30 m) depths in mid-winter and mid-summer, sampled a total of 41 families consisting of 209 species and 18172 individuals, dominated by pomacentrids in abundance and labrids in richness. The fish assemblages on Two-Mile Reef were found to be similar in composition to lower-latitude WIO reefs. Overall ichthyofaunal abundance and richness was significantly higher in summer than in winter, and was higher at shallow sites than at intermediate and deep sites. A multivariate approach confirmed differences between seasons at shallow depths but not between seasons at intermediate and deep depths. The fish assemblages on Two-Mile Reef can therefore be described as being comprised of four relatively distinct communities: a shallow, winter community; a shallow, summer community; a year-round intermediate community; and a year-round deep community. The distributions of discriminating species indicated that high abundances of the algal-feeding pomacentrids are observed only at shallow and intermediate sites while high abundances of the zooplanktivorous serranid subfamily, the Anthiinae, are observed predominantly at deep sites. Assessment of all measured supplementary variables indicated that of all factor combinations, observed patterns could be ascribed most strongly to depth. Quantification of reef characteristics indicated that as depth increases, habitat complexity decreases, benthic communities shift from dense coral domination to sparse sponge domination, and algal biomass and cover decreases. The ability of the videographic transect technique to detect changes in community structure with season and depth indicates that season and depth should be accounted for in future high-latitude ichtyofaunal surveys, and that the videographic transect technique is suitable for implementation in long-term monitoring programs on coral reefs. The similarity in fish assemblages between Two-Mile Reef and lower latitude regions suggests that the protocol for surveying epibenthic coral reef fishes, resulting from this study, is relevant throughout the continental WIO.

published_or_final_version / Biological Sciences / Master / Master of Philosophy