Most estimates of wood supply do not reflect the true availability of wood resources. The availability of wood resources ultimately depends on collective wood harvesting decisions across the landscape. Both social and biophysical constraints impact harvesting decisions and thus the availability of wood resources. While most constraints do not completely inhibit harvesting, they may significantly reduce the probability of harvest. Realistic assessments of woody availability and distribution are needed for effective forest management and planning. This study focuses on predicting the probability of harvest at forested FIA plot locations in Virginia. Classification and regression trees, conditional inferences trees, random forest, balanced random forest, conditional random forest, and logistic regression models were built to predict harvest as a function of social and biophysical availability constraints. All of the models were evaluated and compared to identify important variables constraining harvest, predict future harvests, and estimate the available wood supply. Variables related to population and resource quality seem to be the best predictors of future harvest. The balanced random forest and logistic regressions models are recommended for predicting future harvests. The balanced random forest model is the best predictor, while the logistic regression model can be most easily shared and replicated. Both models were applied to predict harvest at recently measured FIA plots. Based on the probability of harvest, we estimate that between 2012 and 2017, 10 – 21 percent of total wood volume on timberland will be available for harvesting. / Master of Science

With exploding human populations and landscapes that are changing, an increasing number of wildlife species are brought to the brink of extinction. In Canada, the eastern hog-nosed snake, 'Heterodon platirhinos', is found in a limited portion of southern Ontario. Designated as threatened by the Committee on the Status of Endangered Wildlife in Canada (COSEWIC), this reptile has been losing its habitat at an alarming rate. Due to the increase in development of southern Ontario, it is crucial to document what limits the snake’s habitat to direct conservation efforts better, for the long-term survival of this species. The goals of this study are: 1) to examine what environmental parameters are linked to the presence of the species at a landscape scale; 2) to predict where the snakes can be found in Ontario through GIS-based habitat suitability models (HSMs); and 3) to assess the role of biotic interactions in HSMs. Three models with high predictive power were employed: Maxent, Boosted Regression Trees (BRTs), and the Genetic Algorithm for Rule-set Production (GARP). Habitat suitability maps were constructed for the eastern hog-nosed snake for its entire Canadian distribution and models were validated with both threshold dependent and independent metrics. Maxent and BRT performed better than GARP and all models predict fewer areas of high suitability when landscape variables are used with current occurrences. Forest density and maximum temperature during the active season were the two variables that contributed the most to models predicting the current distribution of the species. Biotic variables increased the performance of models not by representing a limiting resource, but by representing the inequality of sampling and areas where forest remains. Although habitat suitability models rely on many assumptions, they remain useful in the fields of conservation and landscape management. In addition to help identify critical habitat, HSMs may be used as a tool to better manage land to allow for the survival of species at risk.

La Réunion est une île volcanique du Sud-Ouest de l’Océan Indien, située à 800 km à l’Est de Madagascar et appartenant à l’archipel des Mascareignes, avec Maurice et Rodrigues. Ce territoire est un département français d’outremer et par conséquent les lois européennes sur la qualité des eaux des cours d’eau s’y appliquent. La chimie de l’eau n’étant pas suffisante pour surveiller la qualité des eaux, les bio-indicateurs peuvent compléter le diagnostic. Dans cette thèse, les diatomées ont été choisies pour évaluer la qualité des eaux courantes. Les diatomées de La Réunion ne sont connues que par des articles épars avec la description de nouvelles espèces. Pendant quatre ans, six campagnes de prélèvements ont été menées sur les rivières pérennes. Ce travail a permis d’acquérir des connaissances sur la flore diatomique épilithique des cours d’eau pérennes de La Réunion et par conséquent sur la biodiversité de ces milieux. De plus, l’écologie des diatomées a été étudiée statistiquement, avec les arbres de régression multivariable (ARM), l’IndVal et ses extensions et les moyennes pondérées, ce qui a permis d’acquérir des connaissances sur l’écologie des communautés, l’autoécologie des espèces et donc sur la qualité de l’eau des rivières. Les résultats intégrés de cette thèse ainsi que les travaux réalisés dans le cadre d’une collaboration avec l’Irstea, ont abouti à une nouvelle méthode indicielle, l’Indice Diatomique Réunion ou IDR, permettant d’évaluer la qualité écologique des cours d’eau. / The volcanic Réunion Island is situated in the southwest Indian Ocean, 800 km to the east of Madagascar; it belongs to the Mascarene archipelago with Mauritius and Rodrigues. This territory is a French oversea department and therefore follows EU laws rivers water quality. The water chemistry is not enough to monitor the quality of water and bioindicators can complete the diagnosis. In this thesis, diatoms have been choosen to assess the quality of the running waters. The diatoms of Réunion Island are only known through scarce articles with bthe description of new species. During four years, six sampling campaigns were conducted on the perennial rivers. The gain of this work is the knowledge of the epilithic diatom flora of Réunion Island perennial rivers and therefore the biodiversity of these environments. Moreover, the study of the diatom ecology by statistics, like Multivariable regression trees (MRT), IndVal and these extensions, Weighted Average (WA) allows acquire knowledge about their community ecology, their autoecology and accordingly on the quality of the river water. The results included in this thesis as well as the work done in collaboration with Irstea, led to a new index method, the Diatomic Index Réunion or IDR, to assess the ecological quality of rivers.

With exploding human populations and landscapes that are changing, an increasing number of wildlife species are brought to the brink of extinction. In Canada, the eastern hog-nosed snake, 'Heterodon platirhinos', is found in a limited portion of southern Ontario. Designated as threatened by the Committee on the Status of Endangered Wildlife in Canada (COSEWIC), this reptile has been losing its habitat at an alarming rate. Due to the increase in development of southern Ontario, it is crucial to document what limits the snake’s habitat to direct conservation efforts better, for the long-term survival of this species. The goals of this study are: 1) to examine what environmental parameters are linked to the presence of the species at a landscape scale; 2) to predict where the snakes can be found in Ontario through GIS-based habitat suitability models (HSMs); and 3) to assess the role of biotic interactions in HSMs. Three models with high predictive power were employed: Maxent, Boosted Regression Trees (BRTs), and the Genetic Algorithm for Rule-set Production (GARP). Habitat suitability maps were constructed for the eastern hog-nosed snake for its entire Canadian distribution and models were validated with both threshold dependent and independent metrics. Maxent and BRT performed better than GARP and all models predict fewer areas of high suitability when landscape variables are used with current occurrences. Forest density and maximum temperature during the active season were the two variables that contributed the most to models predicting the current distribution of the species. Biotic variables increased the performance of models not by representing a limiting resource, but by representing the inequality of sampling and areas where forest remains. Although habitat suitability models rely on many assumptions, they remain useful in the fields of conservation and landscape management. In addition to help identify critical habitat, HSMs may be used as a tool to better manage land to allow for the survival of species at risk.

With exploding human populations and landscapes that are changing, an increasing number of wildlife species are brought to the brink of extinction. In Canada, the eastern hog-nosed snake, 'Heterodon platirhinos', is found in a limited portion of southern Ontario. Designated as threatened by the Committee on the Status of Endangered Wildlife in Canada (COSEWIC), this reptile has been losing its habitat at an alarming rate. Due to the increase in development of southern Ontario, it is crucial to document what limits the snake’s habitat to direct conservation efforts better, for the long-term survival of this species. The goals of this study are: 1) to examine what environmental parameters are linked to the presence of the species at a landscape scale; 2) to predict where the snakes can be found in Ontario through GIS-based habitat suitability models (HSMs); and 3) to assess the role of biotic interactions in HSMs. Three models with high predictive power were employed: Maxent, Boosted Regression Trees (BRTs), and the Genetic Algorithm for Rule-set Production (GARP). Habitat suitability maps were constructed for the eastern hog-nosed snake for its entire Canadian distribution and models were validated with both threshold dependent and independent metrics. Maxent and BRT performed better than GARP and all models predict fewer areas of high suitability when landscape variables are used with current occurrences. Forest density and maximum temperature during the active season were the two variables that contributed the most to models predicting the current distribution of the species. Biotic variables increased the performance of models not by representing a limiting resource, but by representing the inequality of sampling and areas where forest remains. Although habitat suitability models rely on many assumptions, they remain useful in the fields of conservation and landscape management. In addition to help identify critical habitat, HSMs may be used as a tool to better manage land to allow for the survival of species at risk.

In this thesis an analysis is performed on operation times for different sized products in a manufacturing company. The thesis will introduce and summarise most of the theory needed to perform regression and also cover a worked example where three different regression models are learned, evaluated and analysed. Conformal prediction, which at the moment is a hot topic in machine learning, will also be introduced and will be used in the worked example.

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Approved for public release; distribution in unlimited. / In this thesis we develop a procedure for detecting erroneous payments in the Defense Finance Accounting Service, Internal Review's (DFAS IR) Knowledge Base Of Erroneous Payments (KBOEP), with the use of supervised (Logistic Regression) and unsupervised (Classification and Regression Trees (C & RT)) modeling algorithms. S-Plus software was used to construct a supervised model of vendor payment data using Logistic Regression, along with the Hosmer-Lemeshow Test, for testing the predictive ability of the model. The Clementine Data Mining software was used to construct both supervised and unsupervised model of vendor payment data using Logistic Regression and C & RT algorithms. The Logistic Regression algorithm, in Clementine, generated a model with predictive probabilities, which were compared against the C & RT algorithm. In addition to comparing the predictive probabilities, Receiver Operating Characteristic (ROC) curves were generated for both models to determine which model provided the best results for a Coincidence Matrix's True Positive, True Negative, False Positive and False Negative Fractions. The best modeling technique was C & RT and was given to DFAS IR to assist in reducing the manual record selection process currently being used. A recommended ruleset was provided, along with a detailed explanation of the algorithm selection process. / Lieutenant Commander, United States Navy

No estudo das comunidades florestais, estabelecer a importância relativa dos fatores que definem a composição e a distribuição das espécies é um desafio. Em termos de gradientes ambientais o estudo das respostas das espécies arbóreas são essenciais para a compreensão dos processos ecológicos e decisões de conservação. Neste sentido, para contribuir com a elucidação dos processos ecológicos nas principais formações florestais do Estado de São Paulo (Floresta Ombrófila Densa de Terras Baixas, Floresta Ombrófila Densa Submontana, Floresta Estacional Semidecidual e Savana Florestada) este trabalho objetivou responder as seguintes questões: (I) a composição florística e a abundância das espécies arbóreas, em cada unidade fitogeográfica, variam conforme o gradiente edáfico e topográfico?; (II) características do solo e topografia podem influenciar na previsibilidade de ocorrência de espécies arbóreas de ampla distribuição em diferentes tipos vegetacionais? (III) existe relação entre o padrão de distribuição espacial de espécies arbóreas e os parâmetros do solo e topografia? O trabalho foi realizado em parcelas alocadas em unidades de conservação (UC) que apresentaram trechos representativos, em termos de conservação e tamanho, das quatro principais formações florestais presentes no Estado de São Paulo. Em cada UC foram contabilizados os indivíduos arbóreos (CAP ≥ 15 cm), topografia, dados de textura e atributos químicos dos solos em uma parcela de 10,24 ha, subdividida em 256 subparcelas. Análises de correspodência canônica foram aplicadas para estabelecer a correspondência entre a abundância das espécies e o gradiente ambiental (solo e topografia). O método TWINSPAN modificado foi aplicado ao diagrama de ordenação da CCA para avaliar a influência das variáveis ambientais (solo e topografia) na composição de espécies. Árvores de regressão \"ampliadas\" (BRT) foram ajustadas para a predição da ocorrência das espécies segundo as variáveis de solo e topografia. O índice de Getis-Ord (G) foi utilizado para determinar a autocorrelação espacial das variáveis ambientais utilizadas nos modelos de predição da ocorrência das espécies. Nas unidades fitogeográficas analisadas, a correspondência entre o gradiente ambiental (solo e topografia) e a abundância das espécies foi significativa, especialmente na Savana Florestada onde observou-se a maior relação. O solo e a topografia também se relacionaram com a semelhança na composição florística das subparcelas, com exceção da Floresta Estacional Semicidual (EEC). As principais variáveis de solo e topografia relacionadas a flora em cada UC foram: (1) Na Floresta Ombrófila Densa de Terras Baixas (PEIC) - teor de alumínio na camada profunda (Al (80-100 cm)) que pode refletir os teor de Al na superfície, acidez do solo (pH(H2O) (5-25 cm)) e altitude, que delimitou as áreas alagadas; (2) Na Floresta Ombrófila Densa Submontana (PECB) - altitude, fator que, devido ao relevo acidentado, influencia a temperatura e incidência de sol no sub-bosque; (3) Na Savana Florestada (EEA) - fertilidade, tolerância ao alumínio e acidez do solo. Nos modelos de predição BRT, as variáveis químicas dos solos foram mais importantes do que a textura, devido à pequena variação deste atributo no solo nas áreas amostradas. Dentre as variáveis químicas dos solos, a capacidade de troca catiônica foi utilizada para prever a ocorrência das espécies nas quatro formações florestais, sendo particularmente importante na camada mais profunda do solo da Floresta Ombrófila Densa de Terras Baixas (PEIC). Quanto à topografia, a altitude foi inserida na maioria dos modelos e apresentou diferentes influências sobre as áreas de estudo. De modo geral, para presença das espécies de ampla distribuição observou-se uma mesma tendência quando à associação com os atributos dos solos, porém com amplitudes dos descritores edáficos que variaram de acordo com a área de estudo. A ocorrência de Guapira opposita e Syagrus romanzoffiana, cujo padrão variou conforme a escala, foi explicada por variáveis com padrões espaciais agregados que somaram entre 30% e 50% de importância relativa no modelo BRT. A presença de A. anthelmia, cujo padrão também apresentou certo nível de agregação, foi associada apenas a uma variável com padrão agregado, a altitude (21%), que pode ter exercido grande influência na distribuição da espécie ao delimitar áreas alagadas. T. guianensis se associou a variáveis ambientais preditoras com padrão espacial agregado que somaram cerca de 70% de importância relativa, o que deve ter sido suficiente para estabelecer o padrão agregado em todas as escalas. No entanto, a influência dos fatores ambientais no padrão de distribuição da espécie não depende apenas do ótimo ambiental da espécie, mas um resultado da interação espécie-ambiente. Concluiu-se que: (I) características edáficas e topográficas explicaram uma pequena parcela da composição florística, em cada unidade fitogeográfica, embora a ocorrência de algumas espécies tenha se associado ao gradiente edáfico e topográfico; (II) a partir de características dos solos e da topografia foi possível prever a presença de espécies arbóreas, que apresentaram particularidades em relação a sua associação com o solo de cada fitofisionomia; (III) a partir de associações descritivas o solo e a topografia influenciam o padrão de distribuição espacial das espécies, na proporção em que contribuem para a presença das mesmas. / In the study of forest communities, establish the relative importance of the factors that define the composition and distribution of species is a challenge. In terms of environmental gradients study the responses of tree species are essential to the understanding of ecological processes and conservation decisions. In this regard, to contribute to the elucidation of ecological processes in the main forest formations of São Paulo (Dense Ombrophylous Forest of Lowlands, Submontane Dense Ombrophylous Forest, Semideciduous Forest and Savanna Woodland) this study aimed to answer the following questions: (I) floristic composition and tree species abundance in each phytogeographic unit change according to edaphic and topographic gradient?; (II) soil characteristics and topography can influence the occurrence of predictability of tree species widely distributed in different types of vegetation? (III) there is a relationship between spatial distribution pattern of tree species and the soil parameters and topography? The work was carried out in allocated plots in protected areas (PA) with the four main forest formations in terms of conservation and size of Sao Paulo. In each PA was sampled individual trees, topography, texture data and chemical properties of the soil on a plot of 10.24 ha, subdivided into 256 subplots. Canonical corresponding analyzes (CCA) were applied to establish the correspondence between the abundance of species and environmental gradient (soil and topography). The modified TWINSPAN method was applied to CCA ordination diagram to evaluate the influence of environmental variables (soil and topography) on species composition. Boosteed Regression Trees (BRT) were adjusted for predicting the occurrence of the species according to soil variables and topography. The Getis Ord-index (G) was used to determine the spatial autocorrelation of environmental variables used in the BRT models. In analyzed phytogeographic units, correspondence between the environmental gradient (soil and topography) and abundance of species was significant, especially in Savanna Woodland. The soil and topography also correlated with the floristic composition similarity of the subplots, with the exception of Semicidual Seasonal Forest (EEC). The main soil and topography variables related to floristic in each PA were: (1) Dense Ombrophylous Forest of Lowlands (PEIC) - aluminium content in the deep layer (Al (80-100 cm)) which may reflect the Al content at the surface, soil acidity (pH (H2O) (5-25 cm)) and altitude, which outlined the flooded areas; (2) Submontane Dense Ombrophylous Forest (PECB) - elevation, due to the rugged terrain influences the temperature and light incidence in the understory; (3) Savanna Woodland (EEA) - fertility, tolerance to aluminum and soil acidity. In BRT prediction models, the chemical soil variables were more important than the texture due to small variation of this soil attribute in the sampled area. Among the soil chemical variables, cation exchange capacity was used to predict the species occurrence in four forest formations and particularly important in the soil deepest layer on the Dense Ombrophylous Forest of Lowlands (PEIC). In relation to topography, elevation was included in most models and had different influences on the study areas. Overall, the species widely distributed showed the same trend as the association with the attributes of the soil, but with amplitudes of edaphic descriptors that change according to the study area. The occurrence of the Guapira opposita and Syagrus romanzoffiana, whose pattern change according to the scale, was explained by variables with aggregated spatial patterns that amounted to between 30% and 50% relative importance in the BRT model. The presence of A. anthelmia, which defaults also presented certain level of aggregation, was associated only with one aggregate variable, elevation (21%), which may have exerted great influence on the species distribution to delimit wetlands. T. guianensis was related with the predictive environmental variables of aggregate spatial pattern which totaled to about 70% relative importance, what must have been enough to establish the aggregate pattern at all scales. However, the influence of environmental factors (soil and topography) on the species distribution pattern depends not only on the environmental optimum of the species, but a result of species-environment interaction. We concluded that: (I) soil and topographical characteristics explain a small portion of the floristic composition in each phytogeographic unit, although the occurrence of some species have been associated to the soil and topographic gradient; (II) from soil characteristics and topography it was possible to predict the presence of tree species, which showed particular in relation to its association with the soil of each vegetation type; (III) from descriptive associations soil and topography influence the spatial distribution pattern of the species, to the extent that contribute to the presence of the same.