Field studies of a population of Arisaema triphyllum affected by the systemic rust Uromyces ari-triphylli were conducted to examine dynamics of disease transmission and to identify factors influencing plant susceptibility to rust infection. Of undiseased plants that developed foliar infections during the growing season, 55% possessed active resistance to the rust disease, and were able to prevent the foliar infection from becoming a systemic one. Flowering increased the susceptibility of plants to both Mar and systemic infections. A phenotypic selection study was carried out to estimate selection on five plant traits and to determine the role of foliar infections of U. ari-triphylli in mediating selection. Multivariate path analysis suggests that both leaf diameter and a general size factor are under positive directional selection. Pathogen-mediated selection coefficients are small, but comparable in magnitude to overall selection coefficients (15%, on average), indicating the potential importance of diseases as selective agents in nature.

Thèse (M.Sc)--Université Laval, 1998. / Bibliogr. Publié aussi en version électronique.

Some ill. mounted. Bibliography: leaves 86-92.

<p>Rust fungi (Pucciniales) are plant pathogens that cause diseases on economically important crops worldwide and threaten native plants with extinction. Fungicides and disease-resistant plant varieties are the two primary options to control rust diseases. However, more aggressive rust races are emerging, and the current control methods are not as efficient at managing disease as they have been in the past. Thus, we must find other alternatives to keep rust fungi at low population levels to prevent high-yield losses and preserve our natural ecosystems. Biological control (BC) is one promising alternative to the current control methods. BC uses natural enemies (NEs), such as insects and microorganisms, to control pests and plant diseases. However, because the NEs of rust fungi are scarcely documented and not well characterized, using BC for rust diseases is not feasible with the current state of knowledge. Characterization studies of NEs of rust fungi are essential to select or discard potential biological control agents. How do NEs infect or feed the rust? Are NEs specific to rust species or genera? How diverse are they? and how adapted are they to different geographic regions? These are a few of the unresolved questions needed to answer to tap the potential of NEs in applied research for the biological control of rust diseases. This dissertation thesis had three aims: 1) to catalog the NEs of rust fungi from the Arthur Fungarium (PUR) rust collections emphasizing specimens from the Americas and providing barcoding sequences, photographs, and morphological descriptions. This was accomplished by thoroughly screening ca. 50% of the accepted rust genera collected over 200 years from across the globe and from 166 host plant families; 2) to describe new fungal species associated with rust fungi; and 3) to characterize the two most common NEs of rust fungi in aspects related to species diversity, host preference, geographic distribution, and antagonistic interactions. Of the 5,618 randomly screened rust specimens, we found 543 specimens with fungal NEs or hyperparasites. These belonged to the fungal genera <em>Helicobasidium</em>, <em>Ramularia</em>, <em>Sphaerellopsis</em>, <em>Simplicillium</em>, and <em>Trochila</em>. In addition to fungal antagonists, we found larvae of the gall midge <em>Mycodiplosis</em>, whose larval stage feeds rust spores, present in 287 specimens. Among these NEs, the fungal genus <em>Sphaerellopsis</em> and the fly larvae <em>Mycodiplosis</em> were the most commonly associated with rust fungi samples. Therefore, we focused on members of these two genera to determine their host-specificity, geographic distribution and describe early antagonistic interaction events. Our results suggest that members of <em>Sphaerellopsis</em> and <em>Mycodiplosis</em> do not prefer specific rust species or genera. Thus, further studies on non-target species are needed to determine how broad their host range is. In addition, we found that both NEs have a cosmopolitan distribution. However, the fly larvae of <em>Mycodiplosis</em> show distribution patterns, suggesting that some of these species are regionally restricted, especially in the Americas. This result is an exciting finding for conservation biological control where native NEs could be stimulated to increase their populations and control targeted pests. Thus, <em>Mycodiplosis</em> larvae may be a good candidate for local use to control rust diseases without introducing non-native invasive species to new environments. Lastly, we describe the antagonistic interaction events between <em>Sphaerellopsis macroconidialis</em> and the urediniospores of southern corn rust, <em>Puccinia polysora</em>. Although <em>S. macroconidialis </em>was reported as a NE of rust fungi, the nature of the interaction had not been previously described. Herein, we observed how the hyphae of <em>S. macroconidialis</em> grew along the urediniospores germinative tube and tightly coiled around this structure. We also observed a turgor loss of the germinative tube a few days after interacting with the NE. Overall, these results contribute significantly to the characterization of the NEs of rust fungi for further studies in biological control and to develop sustainable agronomical practices in controlling rust diseases.</p>

No description available.

La maladie de la rouille foliaire du peuplier, causée par le basidiomycète Melampsora larici-populina (Mlp) cause des dégâts importants dans les peupleraies européennes. Le séquençage du génome de la souche 98AG31 de Mlp a ouvert de nouvelles perspectives pour l'identification de déterminants géniques impliqués dans le processus infectieux du champignon et notamment ceux codant des effecteurs fongiques capables de manipuler la structure et le fonctionnement de la cellule hôte pour assurer le succès de l'infection. L'analyse du transcriptome du champignon au cours des différentes phases du processus infectieux, basée sur l'utilisation de puces à oligonucléotides NimbleGen ou le séquençage massifs d'ESTs, a permis d?identifier des gènes marqueurs de la germination, de la phase de croissance biotrophe et de la sporulation du champignon. Nous avons notamment pu montrer l'induction importante de nombreux gènes codant des petites protéines sécrétées (SSPs) au cours de la phase biotrophe à 96 hpi heures post-inoculation (hpi) ainsi qu'au sein du parenchyme lacuneux à 168 hpi par microdissection à capture laser. L?analyse fine du sécrétome de Mlp, basée sur l'annotation, l'évolution et l'expression des gènes codant des SSPs a permis de mettre à jour des effecteurs candidats. Certains, spécifiquement exprimés in planta ou présentant des homologies de séquence avec des effecteurs de rouilles ont été localisés au niveau de l'haustorium. De manière intéressante, d'autre gènes candidats appartenant à des familles multigéniques sous pression de sélection positive, sont riches en cystéines, spécifiquement exprimés in planta et possèdent un motif de translocation potentiellement impliqué dans l'export de l'effecteur dans la cellule hôte. Ce travail d'analyse fine des effecteurs potentiels d'un agent de rouille à l'échelle génomique va contribuer à l'amélioration des connaissances sur la biologie de ces champignons biotrophes et contribuera à faciliter la recherche de nouvelles méthodes de lutte contre la maladie / The leaf rust disease caused by Melampsora larici-populina (Mlp) is the main disease affecting poplar plantations in Europe with severe economic losses. The recent sequencing of the genome of Mlp (strain 98AG31) opens new perspectives to identify key genes involved in the fungal infection process and particularly those encoding fungal effectors that could manipulate host cell structure and function to facilitate host colonization. Analysis of the rust transcriptome during time course infection of poplar leaves, based on NimbleGen oligoarrays and massive EST sequencing led to the identification of genes related to fungal germination, biotrophy and sporulation. A consistant induction of genes encoding small-secreted proteins (SSPs) was observed during the biotrophic growth at 96 hours post-inoculation (hpi) but also at 168 hpi in the palisade mesophyll using laser capture microdissection. Mlp Secretome analysis, based on annotation, evolution and expression of genes encoding SSPs helped in identifying candidate poplar rust effectors. Some, specifically expressed in planta or showing homologies with known rust effectors were localized around the haustorium. Interestingly, other candidate genes, belonging to multigenic families under diversifying selection are cystein-rich, specifically expressed in planta and harbour a translocation signal potentially involved in effector export inside host cell. This genome-wide analysis of putative fungal effectors will contribute to the general knowledge of rust biology and will help to set new approaches to prevent and control the disease

5 Absctract Environment and demographic characteristics of host population are important factors affecting incidence and severity of plant diseases. The aim of this study was to reveal possible effects of microclimatic and edaphic characteristics and host population demographic factors on the biotrophic pathogen Puccinia cribrata, microcyclic rust parasitising clonal evergreen plant Vinca minor. I studied the ecology of this pathosystem in natural populations of V. minor in the Soča valley in the Julian Alps in Slovenia. Rugged terrain of the Soča valley with different bedrocks allowed to study pathogen distribution at topographically diverse forest and scrub sites, greatly differing in soil depth and canopy structure. P. cribrata was significantly more likely to occur in the themophilous forest with shallow calcareous soils and open canopy than in the mesophilous forest types. Its prevalence (proportion of diseased stems in population) was also highest in this type of vegetation. Most important host population factors were population size and population density positively affecting incidence and prevalence respectively. Additionally, I tested various vegetation and topographic indexes derived from remote sensing for usability in prediction models. It appears that vegetation indexes connected with canopy...

Phakopsora pachyrhizi H. Syd and P. Syd, the causal organism of soybean rust (SBR) was first reported in Japan in 1902. In 1934 the pathogen was found in several other Asian countries and as far south as Australia. In India, SBR was first reported on soybeans in 1951. There have been several early reports of SBR in equatorial Africa but the first confirmed report of P. pachyrhizi on the African continent was in 1996 from Kenya, Rwanda and Uganda. Since then, the pathogen has spread south with reports from Zambia and Zimbabwe in 1998 and in Mozambique in 2000. In February 2001, P. pachyrhizi was first detected on soybeans near Vryheid, in Northern KwaZulu-Natal, South Africa (SA). As the season progressed, the disease was observed in other parts of the province, and epidemic levels were found in the Cedara, Greytown, Howick and Karkloof production regions. Soybean rust subsequently spread to Amsterdam and Ermelo in the Highveld region of SA. The disease reappeared in SA in March 2002. It is now established that the pathogen is a threat to soybean production in the country with yield losses in the region of 10-80%. A literature review on SBR investigating the taxonomy of the pathogen, its morphology, symptoms, host range, infection process, epidemiology, control options and the economic importance of P. pachyrhizi was complied to provide the necessary background information to conduct research under local conditions and to assist in interpretation of results of experiments. Epidemiological trials were conducted at the University of KwaZulu-Natal under controlled environmental conditions in a dew chamber and conviron. Development of P. pachyrhizi on the susceptible cultivar (LS5995) was quantified in combinations of seven temperatures (15,19,21,24,26,28 and 30°C) and five leaf wetness durations (LWD) (6,9,12,14 and 16hrs) at three relative humidities (RH) (75%, 85% and 95%). Studies indicate that optimum temperature for uredospore infection is 21-24°C with a LWD greater than 12hrs and RH 85-95%. The number of pustules as well as lesion size on the abaxial and adaxial leaf surface increased with increasing LWD at all the RH values tested. Infection did not occur on plants incubated at 15°C and 30°C at 85% or 95%RH whereas at 75%RH infection did not occur on plants incubated at 15°C, 19°C and 30°C regardless of LWD. Number of pustules per lesion produced at 75%, 85% and 95%RH was highest at 24°C and showed a gradual increase with increasing LWD. Lesion size on both leaf surfaces increased after 12hrs LWD at 24°C at 75% and 85%RH whereas at 95%RH lesion size increased after 14hrs LWD at 24°C. Exposure of uredospores to ultraviolet light which is equivalent to ultraviolet C (sunlight) which is < 280nm, shows a decrease in germination (7%). Under continuous darkness, the germination percentage was found to range from 58% after 48 hrs. Germination was found to peak at 16hrs in darkness with a gradual decrease as time increased whereas germination under ultraviolet light was highest after 6hrs with a gradual decrease with increased exposure to light. Germ tube lengths were found to be shorter when exposed to ultraviolet light (107µm) compared to controls kept in the dark (181µm). Results obtained clearly show a negative effect of ultraviolet light on the germination and germ tube length of uredospores. A 0.1 ml suspension of uredospores on 1.25% water agar Petri dishes was exposed to cycles of 14h ultraviolet light and 10h darkness for 48h. Results indicate an increase in germination percentage of uredospores when exposed to 10h of darkness following a 14h period under ultraviolet light. Controlled environmental studies were conducted to determine alternative hosts of P. pachyrhizi in SA. The control used in this experiment was Prima 2000, a susceptible cultivar to soybean rust. Seven legume plants [Cajanus cajan (L.) Huth, Glycine max (L.) Merr, Lablab purpureus (L.) Sweet, Lupinus angustifolius (L.) Finnish, Phaseolus vulgaris (L.), Pueraria lobata (M&S) Wild and Vigna unguiculata (L.) Walp] and three dry bean lines (Bonus; OPS-RS2 and PAN 159) showed typical SBR symptoms when rated after 21 days post inoculation with uredospores for percentage disease severity. Disease severity was significantly different within the alternative hosts, but G. max, P. vulgaris and P. lobata were not significantly different from Prima 2000 (control). A uredospore suspension of 2.5 x 10(5) uredospores ml(-1) from plants that showed typical SBR symptoms was made and inoculated on to Prima 2000, a susceptible soybean cultivar. Uredospores from pustules on G. max, L. purpureus, L. angustifolius, P. vulgaris, P. lobata, V. unguiculata, Bonus and PAN 159 produced viable uredospores on PRIMA 2000. These plants are considered alternative hosts of P. pachyrhizi. Effect of leaf age on susceptibility of soybean to SBR was tested under controlled environmental conditions. Mean number of lesions as well as lesion size were greater on younger leaves than on older leaves of plants at the same physiological age. Plants at the early vegetative and reproductive stages had a significantly lower number of lesions as well as a smaller lesion size. Plants at the V6 and R1 growth stages were significantly more susceptible to P. pachyrhizi than plants at other developmental stages. Trichoderma harzianum Rifai, Eco-77® a commercial biological control product, was evaluated for its efficacy as a biological control agent of P. pachyrhizi. Trichoderma harzianum sprayed at the standard concentration on infected soybean plants was significantly more effective in controlling P. pachyrhizi than plants sprayed at 1/2X and 2x the standard concentration. This was noted in both Trial 1 and 2. Data indicate that spraying the filtrate two days after inoculation produces less disease. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

La maladie de la rouille foliaire du peuplier causée par des champignons du genre Melampsora (Pucciniales, Basidiomycètes) affecte largement les peupleraies en France. Ces champignons possèdent des cycles de vie complexes et infectent deux hôtes différents. La sécrétion de molécules appelées effecteurs est nécessaire lors du processus d'infection par le champignon afin de manipuler les processus de l’hôte et de contourner son immunité. La compréhension de leur rôle est centrale en phytopathologie moléculaire. Au cours de cette thèse, l’analyse du transcriptome de Melampsora larici-populina (Mlp) au cours de son cycle sexué lors de l'infection des deux hôtes, le peuplier et le mélèze, révèle la présence d'une majorité de gènes exprimés communément chez les deux hôtes et d'une fraction exprimée spécifiquement chez chaque hôte, notamment des gènes codant des effecteurs candidats. Des cribles fonctionnels réalisés sur un répertoire d’effecteurs candidats de Mlp ont révélé deux candidats d’intérêt. L’effecteur MLP124017 interagit avec des protéines de la famille TOPLESS-RELATED PROTEINS et présente une structure similaire à des protéines NUCLEAR TRANSPORT FACTOR 2 LIKE. L'effecteur MLPCTP1 est localisé dans les chloroplastes en système hétérologue tabac et chez le peuplier. Les fonctions de ces effecteurs restent à élucider mais ces travaux ouvrent de nouvelles perspectives quant à la diversité et au rôle des effecteurs chez les Pucciniales. L'analyse préliminaire du génome de M. allii-populina montre des répertoires comparables en gènes et en effecteurs candidats par rapport à Mlp ainsi qu'une expansion de la taille du génome due à l’invasion par des éléments transposables / The poplar rust disease is caused by fungi belonging to the Melampsora genus (Pucciniales, Basiodiomycota) that cause important damages in poplar plantations in France. These fungi achieve their complex life cycles on two different host plants. The secretion of molecules called effectors that alter cell processes and impair immunity are required to set a successful infection. A central theme of molecular phytopathology is to understand how these molecules function in the host cell. In this PhD thesis, the transcriptome analysis of M. larici-populina (Mlp) during its sexual cycle while infecting its two host plants, poplar and larch, revealed a majority of genes commonly expressed on both hosts and a fraction specifically expressed on each host, including genes encoding candidate effectors. Effectoromic screens developed on a panel of Mlp candidate effectors revealed two candidates of interest. The candidate effector MLP124017 interacts with proteins of the TOPLESS-RELATED PROTEINS family and presents a structure similar to NUCLEAR TRANSPORT FACTOR 2 LIKE proteins. The MLPCTP1 effector is translocated inside chloroplasts of the heterologous plant tobacco and poplar. The functions of these two effectors remain to be determined but the functional characterization initiated in this thesis opens new perspectives in term of diversity and roles of effectors in Pucciniales. The preliminary analysis of the M. allii-populina genome shows similar repertoires of genes and candidate effector genes compared with Mlp as well as an increased genome size due to transposable elements invasion