An overall process of globalization influences major changes in companies’ bussiness strategy. Supply chain management (SCM) becomes one of the most prioritetical activities in company. Seeking to survive in hard competition, they must improve their distribution strategies. Spreading Net technology requires flexible company to work directly with suppliers and to be able to react quickly and reasonably to demanding environmental changes. The classic objective of SCM is to be able to have the right products in the right quantities (at the right place) at the right moment at minimal cost. This requires a close integration of effective control functions and SCM to assure correctness and maturity of sending and receiving information, complience with internal company rules and supply strategies. This paper analyses SCM information systems emphasising their principles, pecularities and weaknesses. A new control method of SCM is introduced — „SCM using complex control methods“. It adds content management principles to current SCM control methods. This paper describes system concept, system architecture and generic business process models. To prove effectiveness of this method software was designed, developed and implemented in one big trading company. Additionally quality research of implemented software was made and it showed the effectiveness of applying quality assurence in software implementation process.