Tidal exchanges of organic carbon, nitrogen and phosphorus between a south temperate Sarcocornia marsh and its associated estuary are examined. Subterranean water flow was small, and the hydraulic exchange between the two systems largely surficial. The dominant tidal signal was semi-diurnal, and the extent of inundation of the marsh varied considerably as a consequence of interactions of semi-lunar tidal cycles with changes in daily mean sea level. Annual net fluxes of organic carbon were directed from the marsh to the estuary, but amounted to less than 2% of marsh aerial net primary productivity. This indicates the incompatibility of E.P. Odum's outwelling hypothesis to this marsh-estuarine system. The direction of net flux of organic carbon switched on a time-scale of days. These directions were largely correlated with mesoscale oceanic events, which materially altered the extent of marsh inundation, and which provided evidence of the mutual exclusivity of outwelling of DOC from the marsh and oceanic upwelling. Laboratory mesocosm experiments using intact marsh blocks of sediment from the marsh were conducted to identify the proximate processes and interactions at the marsh-water interface responsible for the variability of marsh-estuarine exchanges. Patterns of fluxes of organic carbon, total nitrogen and phosphorus were markedly different in the structurally contrasted tidal creek and Sarcocornia Zone regions of the marsh. Both regions exported these components, but the fluxes of organic carbon and total phosphorus were significantly larger from the tidal creek than from the Sarcocornia zone, and the opposite applied to nitrogen. The presence of brachyuran crabs . the most numerous macrofauna on the marsh enhanced the flux of carbon, nitrogen and phosphorus from the marsh biocoenosis, largely as a result of the effect of their bioturbation. Evidence is examined which suggests that differential mobilization of nutrients in the two zones by crabs is responsible for biogeochemical coupling of these two regions , which may account for the elevated productivity of salt- marsh systems

Crabs are conspicuous inhabitants of temperate salt marshes and tropical mangroves and interact with their environment through several processes. However, detailed information on crab community processes is absent for most South African estuaries and nearshore coastal regions. This study evaluated the primary producers supporting crab species in the salt marsh dominated Swartkops estuary and the mangrove Mngazana estuary. Various methods estimating crab abundances were also assessed in different microhabitats and the larval distribution of crabs in the coastal zone was also investigated. Various methods for estimating crab abundance have been employed in the past, each with its inherent biases. The microhabitat of a mangrove forest in Australia was structurally altered by the manipulation of the litter, pneumatophores and the associated algae. These alterations did not affect the behavioural activity or the numbers of crabs recorded in any of the experimental treatments by either visual counts or pitfall traps. However, the number of crabs caught in the pitfall traps differed between the sites. Species-specific behaviour which was not investigated in this study may bias crab abundance estimates when using pitfall traps and therefore requires further investigation. Benthic consumers inhabiting shallow coastal environments may ultimately have the origin of their nutrition in a number of possible sources. Isotopic and gut content analysis of Thalamita crenata and juvenile Scylla serrata in the Mngazana estuary in South Africa revealed that these two portunids are able to share a habitat by resource partitioning. Differences were noted for species-specific utilization of primary producers not only between seasons within a site, but also between sites. This highlighted the use of locally produced primary producers sustaining food webs in estuaries. Mangrove production in the Mngazana estuary is very important and contributes to most of the carbon in the underlying sediments in the mangrove forest. However, the relatively large number of species and biomass encountered in this estuary may also be attributed to the fact that the different species are able to exploit of a number of different resources. The variation in stable isotope analysis of the different crab species throughout the estuary indicated that these crabs able to occupy the same habitat by feeding on a number of different resources and may preferentially select for a specific primary producer. A stable isotope of crabs in the salt marsh Swartkops estuary indicated that the dominant primary producer sustaining crab communities may even take place on a relatively smallscale. Sesarma catenata found at the inner marsh site recorded more depleted carbon signatures than those encountered in the other sites approximately 100 m away, and reflected signatures similar to the locally-encountered inner marsh plants. The relatively enriched nitrogen signatures of the anthropogenically-impacted Swartkops estuary is an indication of extensive inputs due to urbanization and industrialization, in contrast to the relatively pristine Mngazana estuary which exhibited low nitrogen signatures. Emphasis has been placed on the abiotic component of the exchange of nutrients and energy, although living organisms may also be transported, both actively and passively, between ecosystems. Little variation in either species composition or abundance was found between seasons for the larval distribution of brachyuran crabs on the east coast of South Africa. Due to the lack of published larval descriptions, larvae could not be identified to species level and it was therefore not possible to identify whether the larvae were hatched or spawned in an estuary or in a marine environment, or whether the larvae originated in the northern tropical regions. Frequent wind-reversals which are common in this region may retain larvae close inshore and supply the southern temperate locations with larvae from the northern locations. In conclusion, this study has shown that in highly productive systems with a number of potential primary producers, the crabs that inhabit the estuary show a marked diversity in resource utilization which could potentially allow a number of closely related species to occupy different trophic levels. This study also highlights the importance of locally produced sources in an estuary, which may occur on very small scales and this needs to be factored in with the design of any future stable isotope studies of this nature.

This study develops techniques for the preparation and counting of testate amoebae for Holocene sea-level reconstructions. In addition, this study provides a ~3000 year relative sea-level reconstruction for south Hinnøya in the Vesterålen islands off mainland Norway, adding new data to a poorly defined period of the Holocene sea-level history of north-western Norway. This is important to quantify rates of glacial-isostatic adjustment (GIA), to refine GIA models, and to establish baseline (pre-industrial) rates of relative sea-level change. Surface sediments from two salt marshes (Storosen and Svinøyosen) in south Hinnøya are used to assess the effects of using different preparation procedures and count totals when analysing for testate amoebae. Analytical efficiency can be improved upon by using a mild alkali, chemical disaggregant (5 % KOH) to break up fibrous salt-marsh sediment and concentrate tests prior to counting. A count total of 100 individuals, rather than 150, can be used to make time gains with little or no effects on assemblages. Training sets of salt-marsh surface testate amoebae, foraminifera and elevational data are established for the two field sites. For testate amoebae, species – elevation relationships are constructed using regression modelling and applied to downcore fossil samples using a transfer function to derive estimates of sea level for the past ~100 years. The greater water depths reconstructed between ~3000 and ~100 years ago are not covered by modern foraminiferal training sets and are therefore estimated qualitatively from the fossil foraminiferal assemblages supplemented by information derived from fossil molluscs. Chronology is based on a combination of AMS14C, 210Pb, 137Cs and a suite of geochemical markers. At south Hinnøya, sea level has been falling at a rate of ~0.5 mm yr-1 over the last 3000 years.

CH3Br and CH3Cl (methyl halides) are the most abundant natural vectors of bromine and chlorine into the stratosphere and play an important role in stratospheric ozone destruction. The current knowledge of their respective natural sources is incomplete leading to large uncertainties in their global budgets. Beside the issue of quantification, characterisation of possible sources is needed to assist modelling of future environmental change impacts on these sources and hence the stratosphere. This study describes measurements conducted at two temperate salt marsh and three temperate forest sites in Scotland, and one tropical rainforest site in Malaysian Borneo to quantify and characterise natural methyl halide producing processes in these respective ecosystems. Measurements were conducted with static enclosure techniques, and methyl halide fluxes were calculated from the concentration difference between blank/background and afterenclosure samples. Methyl halide concentrations were determined via oxygen-doped GCECD with a custom-built pre-concentration unit. External factors such as photosyntheticallyactive radiation (PAR), total solar radiation, air temperature, soil temperature, internal chamber temperature and soil moisture were recorded in parallel to the enclosures to determine possible dependencies. Salt marsh studies were carried out at Heckie’s Hole in East Lothian, and Hollands Farmin East Dumfriesshire for 2 years. The study subjects were salt marsh plants that were enclosed during daylight hours in transparent enclosures for 10min each at 2–4 week intervals throughout the year. Parallel to this monitoring programme, systematic manipulation experiments and diurnal studies were carried out to learn more about the possible influence of potential drivers such as sunlight and temperature. Mean annual net fluxes ( standard deviation (sd)) were 300 44 ngm-2 h-1 for CH3Br and 660 270 ngm-2 h-1 for CH3Cl, with fluxes of both gases following a diurnal as well as an annual cycle, being lowest during winter nights and highest during summer days. A possible link between variations of daytime fluxes over the course of a year and changes in temperature was found. CH3Cl and CH3Br fluxes were positively correlated to each other and average fluxes of CH3Cl were linked to dry mass of certain species such as Puccinellia maritima, Aster tripolium, Juncus gerardi and Plantago maritima as found at the different measurement locations. No link between methyl halide fluxes and total halogen content or halogen concentration of the enclosed vegetation was found. Work in temperate forests was carried out for over one year at Fir Links, a mixed beech/ sycamore forest in East Lothian, and on one occasion each in Griffin Forest, a sitka spruce plantation in Perthshire, and finally the Hermitage of Braid, a mixed woodland park in Edinburgh. The study subject was leaf and needle litter which was enclosed in opaque 12 L containers for 10min–24h. During enclosure, internal chamber temperature was recorded, and leaf/needle litter water content was determined after enclosure. Combined average CH3Br and CH3Cl fluxes from temperate forest litter were 4.3 10-3 ngg-1 h-1 and 0.91 ngg-1 h-1, respectively. Average fluxes measured from leaf and needle litter were comparable in magnitude and CH3Br and CH3Cl were positively correlated. However no correlation of methyl halide fluxes to either temperature or litter water content was observed. Work at Danum Valley inMalaysian Borneo focused on flux measurements from both trees and leaf litter in a tropical dipterocarp forest. Fluxes from tropical trees were measured with transparent branch chambers at 20min enclosure times whilst methyl halide fluxes from leaf litter were measured with opaque 12 L containers at 24h enclosure times. Mean CH3Br and CH3Cl fluxes from branch enclosures were 0.53 ngg-1 h-1 and 27 ngg-1 h-1, respectively, and CH3Br and CH3Cl fluxes from tropical leaf litter were 1.4 10-3 ngg-1 h-1 and 2.3 ngg-1 h-1 respectively. Again fluxes of CH3Br and CH3Cl were positively correlated but no direct environmental driver for flux variations was found. The magnitude of methyl halide fluxes was species specific with individuals of the genus Shorea generally producing large amounts of methyl halide. Tropical rainforests were confirmed to be potentially the largest single natural source of CH3Cl. Global estimates were derived from extrapolating measured fluxes from the respective global land cover areas. These estimates suggest that the ecosystems examined in this study could account for over 1/3 of global CH3Cl production and up to 13%of global CH3Br production in nature. The ratio of CH3Br to CH3Cl emissions for these ecosystems is likely to be dependent on the abundance of bromine in the plant material with higher bromine content boosting CH3Br production and suppressing CH3Cl production. For this reason salt marshes are only a very minor source of CH3Cl.

The Dee estuary, one of the most important British estuaries in terms of size and conservation value, has been subject to extensive colonisation and development of intertidal mudflats by salt marsh vegetation. In the last century, acceleration of this process has been attributed to the ability of Spartina anglica C.E. Hubbard to colonise bare sediment. The research in this thesis aims to investigate the ecological patterns and processes involved in the development of salt marsh vegetation. These have been examined using a large-scale approach involving remote sensing techniques and a small-scale approach to examine ecological processes at the level of the individual plant and species. Large-scale temporal patterns in the distribution were investigated by analysing a sequence of monochrome aerial photographs dating from 1955 to 1997. At the marsh apex, initial rapid colonisation was followed by a decreased rate of expansion and a reduction in the pioneer zone. This suggested a steepening of the marsh elevation gradient, which is interpreted as the marsh approaching its natural limit of expansion. The rate of salt marsh expansion was consistent across the time sequence for the second target area, a cross-section of the marsh gradient, but with S. a«g/zca-dominated colonisation of mudflats changing to colonisation by a pioneer community co-dominated by S. anglica and Salicornia europaea. Large-scale spatial distribution patterns were further investigated using multispectral remote sensing data from 1997. Radiometric data were used to define the spectral characteristics of the major types of salt marsh vegetation. Airborne Thematic Mapper data were used to classify the reflectance data from the whole marsh to determine the spatial distribution of plant communities based on their spectral characteristics. Mapping of these communities provided a baseline that will be a useful tool for future management of the salt marsh. An experimental approach was used to examine the role of abiotic and biotic factors on the growth and interactions between S. anglica and Puccinellia maritima (Huds.) Parl. In two series of competition experiments, P. maritima exerted a one¬way effect over S. anglica. The intensity of this interaction was increased in environmental conditions favourable to P. maritima, and was greater in terms of above-ground than below-ground biomass. In both experiments, S. anglica exhibited a disproportionate reduction in below-ground competitive interaction in abiotic conditions less favourable to P. maritima. A corresponding increase in rhizomes suggested that this is a potential mechanism by which S. anglica may evade competitive neighbours at low marsh elevations. An appreciation of the importance of scale has led to a multi-scaled and holistic view of the ecological process of salt marsh colonisation and development. Integration of both large and small-scale approaches has provided valuable information on the ecological patterns and processes, and has important implications for current and future management of salt marsh in the Dee estuary.

A detailed record of the Late Holocene sea level rise and landscape evolution that has taken place on the Georgia coast is contained within the sedimentary stratigraphy of its salt marsh depositional basins. Global relative sea level (RSL) has risen during the Late Holocene, and the rate of rise has accelerated during the Anthropocene. Jones Narrows marsh stratigraphy and radiocarbon analysis indicate increasing rates of RSL rise for the late Holocene on the Northern Atlantic Coast of Georgia, while FPXRF analysis of the marsh sediments facilitates a chemostratigraphic study of Jones Narrows salt marsh deposition and landscape evolution. Sedimentation and hydrology at the site have been heavily influenced by recent local anthropogenic impacts, which are examined through stratigraphic and spatial methods.

Thesis advisor: Tara Pisani Gareau / Salt marshes provide important ecosystem services, including carbon sequestration. Permanently inundated ponds are prominent features in the marsh landscape, encompassing up to 60% of the total marsh area, but they are rarely considered in biogeochemical assessments. I investigated two ponds in Plum Island Estuary, MA to measure and analyze their metabolism. The ponds varied in size and vegetation cover. Oxygen concentrations and pH values were recorded in 15-minute intervals during the entire study period. The ponds regularly become hypoxic or anoxic during night. This is a problem for the estimation of respiration rates which are based on nighttime measurements. To investigate this potential underestimation, several approaches to estimate respiration were used. First, additional measurements of surface water concentrations of dissolved inorganic carbon were made. A comparison of respiration estimates based on oxygen and DIC changes during tidal isolation revealed a reasonable agreement for the most time but not during periods of high productivity during the day or late at night. At this point, oxygen concentrations are so depleted that a change in concentration – the indicator of respiration – is barely detectable. However, DIC based respiration rates indicate that respiration is occurring under these hypoxic/anoxic conditions. This saturation changes during periods of tidal inundation, when a nighttime peak in oxygen concentrations indicates that the flood water is relatively enriched in oxygen compared to the pond water. On three days, it was tested whether under these conditions the oxygen-based respiration rate was higher than under hypoxic conditions (i.e., during tidal isolation). The rates were indeed higher than those under tidal isolation but still not in the range of DIC-based rates. Overall, metabolic rates differed between the two ponds in magnitude, which is likely caused by different vegetation cover, but may be influenced by size, sampling period, and duration as well. / Thesis (BS) — Boston College, 2018. / Submitted to: Boston College. College of Arts and Sciences. / Discipline: Departmental Honors. / Discipline: Earth and Environmental Sciences.

Plant interactions (e.g., competition, facilitation) are critical drivers in community development and structure. The Stress Gradient Hypothesis (SGH) provides a predictive framework for how plant species interactions vary inversely across an environmental stress gradient, predicting that facilitation is stronger with increasing levels of stress. The SGH has been supported in numerous ecosystems and across a variety of stress gradients, but recent research has demonstrated contradictory results. These discrepancies have led to SGH revisions that expand its conceptual framework by incorporating additional factors, such as other stressor types and variations in species life history strategies. In this dissertation, I examine a further modification of the SGH by proposing and testing a Multiple Stress Gradient Hypothesis (MSGH) that considers how plant interactions vary along a continuous gradient of two co-occurring stressors using mangrove and salt marsh communities as a case study. In Chapter 1, I outline the predictive framework of a MSGH, by creating a series of predictions of species interactions. The components of the MSGH predict that stressors of similar types (e.g., resource and nonresource) will have similar effects and be additive. On the other hand, varying species life history strategies and life stages will lead to extremes of plant interactions. In Chapter 2, I performed a series of experiments to test the various components of the MSGH. In Chapter 3, I performed a large-scale observational study to test whether multiple co-occurring stressors altered the cumulative effects on plant interactions, and if these stressors should be grouped (e.g., resource and non-resource, abiotic and biotic, etc.) to enhance predictability. From a series of studies conducted herein, I concluded that co-occurring stressors are important factors that control complex species interactions as shown in my MSGH modeling approach. Further, future theories need to incorporate species-specific and stressor specific grouping when modeling how species interactions shape communities. / Includes bibliography. / Dissertation (Ph.D.)--Florida Atlantic University, 2013.

Salt marshes are some of the most productive and valuable landscapes on earth, but they are vulnerable to the effects of sea-level rise, erosion and eutrophication. These processes act on a wide range of temporal and spatial scales, which complicate assessments of the health and stability of marsh ecosystems. High-frequency monitoring using in situ sensors captures the complete range of these dynamics, but extracting meaningful physical and ecological information from these signals requires process-based models coupled with statistical techniques. I develop and apply such methods to study two coastal landscapes, a coastal pine forest on the Eastern Shore of Virginia and a mesotidal salt marsh complex in the Plum Island Estuary, Massachusetts. Observations from groundwater wells in the Virginia pine forest indicate that storms are the dominant controls on the hydrology of the forest and that tidal influence is nonexistent. This forest exhibits a distinct spatial pattern in age structure in which young trees do not grow at low elevations. This pattern can be explained by a model that includes the interaction of sea-level rise, storms and the age-dependent variation in tree stress response, which predicts that the long-term evolution of the boundary is an ecological ratchet. Stresses due to sea-level rise slowly push the boundary at which young trees can survive upslope. Powerful storms then kill the mature, persistent forest at low elevations, which quickly pushes the forest boundary up to the regeneration boundary. Salt marshes need to accumulate sediment to replenish material lost as sea-level rises and creek banks erode. Fluxes of sediment can be monitored with simultaneous high-frequency observations of flow from acoustic Doppler current profilers and turbidity from optical backscattering sensors. I first investigate the relationship between water level and flow in marsh channels and develop predictive stage-discharge models to simplify the monitoring of fluxes. I then construct sediment budgets for eleven salt marshes in the Plum Island Estuary. The observed budgets depend strongly on the unique hydrodynamic conditions of each marsh channel. Variability in these conditions leads to the observed spatial and temporal variability in sediment fluxes from these marshes.

Estuarine habitats along the temperate south-eastern shores of Australia are generally made up of salt marsh, mangrove forests and seagrass beds. In urban areas these habitats have been progressively fragmented as a result of population increase and industrial expansion. Salt marshes in particular have been vulnerable to urban expansion and reclamation because of their close proximity to densely populated areas, while mangrove forests have been less often reclaimed because of frequent tidal inundation. The effect of reclamation of salt marshes on the biotic assemblages and functioning of mangrove forests with an adjacent salt marsh, park or bund wall was examined at nine separate locations on the Parramatta River, Sydney NSW. A mensurative approach was used to describe the patterns of distribution and abundance of macro fauna at several temporal and spatial scales. The implications for management are that salt marshes are an integral part of estuaries, and smaller patches of salt marsh are just as important as larger patches in maintaining the diversity of faunal assemblages and ecosystem functioning in mangrove forests in urban areas / Master of Science (Hons)