Climate change is threatening biodiversity, causing populations and species to adapt, or otherwise, become extinct. Sea turtles have survived dramatic climate changes in the past, however, due to a history of intense human exploitation, and the current anthropogenic threats, their current resilience may be jeopardized. The main pursuits of this thesis were to i) evaluate the resistance of green turtles to predicted climate change impacts, using a globally significant rookery, in Poilão, Guinea-Bissau, as a case study; and ii) assess key population parameters to inform the conservation management of this resource. As the work developed I additionally had the opportunity to study the dynamics of an emerging disease in a juvenile foraging aggregation from Puerto Rico, which contributed to a broader understanding of resilience in this species. Specifically, I investigate the nest site selection behaviour of green turtles, their nesting environment, and the outcomes for their offspring, at Poilão, and apply this information to infer on the resilience of this population under future scenarios of climate change. I explore the connectivity established by the dispersal of post-hatchlings from Poilão, followed by their recruitment to foraging grounds, to set the geographical context of this major population. Lastly, I model the dynamics of Fibropapillomatosis, which affects juvenile green turtles globally, and examine the potential for disease recovery. The green turtle rookery in Poilão shows some resilience to expected climate change impacts. This significant population likely contributes to all juvenile foraging aggregations along the west coast of Africa, and to some extent to those in South America. Currently, green turtles are capable of recovery from Fibropapillomatosis, however, the incidence of disease may be enhanced by climate change.

Mule deer (Odocoileus hemionus) are an ecologically, economically, and socially important species across much of the western United States. As such, populations and habitat are intensely managed by state game agencies. However, populations have been declining in recent decades and several factors have been implicated (e.g., climate, predation, competition, and habitat availability). Population dynamics of mule deer are driven by a combination of survival of adults and juveniles and reproductive rates. While adult female mule deer typically have consistently high annual survival rates (85% annually), juveniles are more easily affected by stressors (biotic and abiotic conditions) and therefore their annual survival rates are generally low and highly variable. In an effort to better understand the effects of management on—and the habitat needs for—reproduction and recruitment, we examined the potential effects of male-biased harvest on recruitment in populations of mule deer and the selection of sites for parturition by mule deer females. Changes in buck:doe ratio due to male-biased harvest may alter rates of pregnancy, timing of parturition, and synchrony of parturition if inadequate numbers of males are present to fertilize females during their first estrous cycle. If rates of pregnancy or timing of parturition are influenced by decreased buck:doe ratios, recruitment may be reduced. This results from fewer births, later parturition (resulting in lower survival of fawns), and a less synchronous parturition period (increasing the proportion of neonates exposed to predation). Our objectives were to compare rates of pregnancy, timing of parturition, and synchrony of parturition between exploited populations of mule deer with relatively high (Piceance Basin) and relatively low (Monroe Mountain) buck:doe ratios. We determined rates of pregnancy via ultrasonography and timing of parturition via expulsion of vaginal implant transmitters. We found no differences in rates of pregnancy, timing of parturition, or synchrony of parturition between Monroe Mountain and Piceance Basin. This suggests that the relatively low buck:doe ratios typical of heavily harvested populations do not have unintended or indirect impacts on population dynamics because recruitment remains unaffected. Because neonate ungulates are most vulnerable to predation during parturition and shortly thereafter, selecting sites for parturition can have direct fitness consequences. We investigated the selection of sites for parturition by mule deer. We utilized vaginal implant transmitters to identify sites of parturition. We then obtained and compared macro- and micro-habitat features between sites of parturition and associated random sites. Parturitient females selected sites based on topography, habitat-type, and obscurity. Enhanced understanding of habitat variables that are selected for parturition provides insight into the life history or behavior of a species and allows managers to ensure that suitable habitat is available for this stage of life-cycles.

Unequal sex ratios are widespread in dioecious plants and understanding their cause is important to understanding fundamental aspects of their population dynamics, and yet what causes biased sex ratios in plants is still poorly understood. Competition experiments have been used in plants to predict the outcome of species interactions, but they have rarely been used to help explain sex ratio bias. This study used a response surface competition design to measure the relative competitive abilities of the sexes of the bryophyte Marchantia inflexa (a thallus liverwort of Marchantiaceae) to predict the outcome of competition before the onset of sexual reproductive structures. In bryophytes, dioecy and sex ratio bias is especially common, making them effective organisms for studying sex ratio bias. Given the frequency of female bias in bryophytes, the hypothesis was that females will show a higher competitive ability relative to males. The experiment was conducted in greenhouse conditions at several densities and proportions over the course of seven months. As individuals grew and formed clumps, identities were tracked, and growth measurements were made using photographs and computer imaging software. Both sexes grew on average 41% more with the opposite sex relative to their single-sex cultures. A model predicting future sex ratios showed coexistence between the sexes and predicted a male biased sex ratio of 3.2 males to 1 female. A trade-off was observed for males where single-sex cultures contained more asexual structures than mixed-sex cultures and the reverse for growth rate. Higher levels of asexual reproduction in males in single-sex cultures might be selected for to increase male dispersal for a higher probability of encountering females. This pattern was not found for females. The overyielding results suggest an interaction effect may exist due to niche differentiation between the sexes. In addition, the results suggest that in some dioecious plants a change in sex ratio can occur before differences in their allocation to sexual reproduction.

<p>Tree sparrows (Passer montanus) have been studied in two areas in Sweden since 1997. At both sites, tree sparrow eggs had remarkably low hatching success. On average only 60% of the eggs hatched. Analyses have shown that this was caused by embryonic mortality, which was highly sex biased. About 70 % of the dead embryos were males, while about 65 % of all fledged nestlings were females. Impaired hatching success here related to two factors. Hatching success was lower for pairs with a male in poor body condition, and it was lower in areas with a high local population density. </p><p>A sex bias in the mortality early in life has been demonstrated in several species. Since the competitive ability of males is determined by conditions early in life, parents with poor provisioning capacity should prefer to produce female offspring in broods reared under poor conditions. The body condition of a tree sparrow during the nestling stage was well correlated to the condition as an adult, and pairs in which the male parent was in poor condition produced chicks in poor condition. Since the breeding success of a pair depended more on the condition of the male, females appear less affected by conditions early in life. Parents with poor provisioning capacity appear to bias offspring survival towards females, and a difference in the early susceptibility may be adaptive. </p><p>Changes in birth sex ratios have in some cases been suspected to result from exposure to estrogenic environmental pollutants. This was examined by exposing great- and blue tit embryos to a synthetic estrogen. Although there was a difference in the mortality rate, the difference was present also in the control groups, why this could not be attributed to estrogen exposure.</p>

Understanding the processes that govern mating behaviors is a fundamental goal of evolutionary biology and behavioral ecology. Population-level patterns of mate acquisition and offspring production, otherwise known as the genetic mating system, play a central role in the sexual selection on morphological and behavioral traits and may facilitate speciation. The central hypothesis of this research is that variation in environmental conditions, such as temperature, turbidity, and habitat, and demographic influences such as population density, sex ratios and temporal availability of mates, may limit mating and reproductive success in a predictive manner. Therefore the goal of this dissertation is to examine the contributions of geographic and temporal variation on the plasticity of the genetic mating system in two species of pipefish. The first study examined whether meaningful variation in the genetic mating system exists between two natural populations of the dusky pipefish, Syngnathus floridae. Results of this investigation provide evidence that the genetic mating system differs among different geographic locations. The second study considered the relative contributions of environmental conditions and population demographics on differences in the genetic mating system of dusky pipefish from five natural populations. The results of this investigation show strong trends for demographic and environmental factors to strongly influence the genetic mating system between populations. The third study considered how variation in the number of available mates predicts the outcome of sexual selection during the course of a breeding season in the broad-nosed pipefish, Sygnathus typhle. The results of this study indicate a strong influence of the operational sex ratio on the genetic mating system. In addition to these studies, a study was conducted to investigate whether phylogeographic relationships may be responsible for geographic variation in the genetic mating system of the dusky pipefish of pipefish. Mitochondrial DNA analysis does not substantiate subspecies designations for this species and microsatellite analysis show a clear pattern of isolation by distance. Taken together, these studies significantly enhance the understanding of how mating systems are organized over broad environmental gradients and temporal/spatial scales and to the evolution of sexual selection on the whole.

Tree sparrows (Passer montanus) have been studied in two areas in Sweden since 1997. At both sites, tree sparrow eggs had remarkably low hatching success. On average only 60% of the eggs hatched. Analyses have shown that this was caused by embryonic mortality, which was highly sex biased. About 70 % of the dead embryos were males, while about 65 % of all fledged nestlings were females. Impaired hatching success here related to two factors. Hatching success was lower for pairs with a male in poor body condition, and it was lower in areas with a high local population density. A sex bias in the mortality early in life has been demonstrated in several species. Since the competitive ability of males is determined by conditions early in life, parents with poor provisioning capacity should prefer to produce female offspring in broods reared under poor conditions. The body condition of a tree sparrow during the nestling stage was well correlated to the condition as an adult, and pairs in which the male parent was in poor condition produced chicks in poor condition. Since the breeding success of a pair depended more on the condition of the male, females appear less affected by conditions early in life. Parents with poor provisioning capacity appear to bias offspring survival towards females, and a difference in the early susceptibility may be adaptive. Changes in birth sex ratios have in some cases been suspected to result from exposure to estrogenic environmental pollutants. This was examined by exposing great- and blue tit embryos to a synthetic estrogen. Although there was a difference in the mortality rate, the difference was present also in the control groups, why this could not be attributed to estrogen exposure.

Flyingfish has significant meaning on three different dimensions: ecology, culture and fisheries at Kuroshio off Taiwan. However, the figures of catch dropped nearly 60% in 2006-2007, which has led scientist to pay more attention on the sustainability of resources for the species. On the other hand, with little knowledge of reproductive biology and life history of the species, it is difficult to change the situation. Reproductive biology is an important basic study, which is to discover the life history of a species ,also it assesses changes in their resources and reproductive potential. Cypselurus poecilopterus is the most important dominant species in Kuroshio waters of Taiwan, and also an economical species. The reproductive biological study of Cypselurus poecilopterus would be great benefit on further studies. This study performed from April 2008 to June 2010, sampling from diverse areas, Pingtung, Taitung, Hualien, Ilan and Ludao, collected total 2174 individuals, including 1756 males, 418 females and 7 were unable to identify. Fork length (FL) range from 15.2cm ~ 22.1cm. All samples were measured by the total length (TL), fork length (FL), body weight (BW) and other data, and the gonadal histological examination, and the female sex ratio, gonadosomatic index (GSI), condition factor (CF). The results shows that only 5% of female with fork length less than 18.5cm, while more than 80% with more than 20.5cm; via gonadal histological examination, the occyte development can be divided into chromatin-nucleolus stage, peri- nucleolus stage, yolk stage, migratory nucleus stage and ripe egg stage, five stages. When female GSI is greater than 4, it reaches matured, and the fork length of the smallest matured individual is 16.3cm, average length at 50% sexual maturity was estimated to be 18.6 cm FL for female; the annual reproductive period is April to August, and the monthly female sex ratio seems like would be raise with the closing of reproductive period. Fecundity is about 13000 ~ 36000; Cypselurus poecilopterus is estimated to be simultaneous mature species by the gonadal histological examination and egg diameter measurements.

Understanding the processes that govern mating behaviors is a fundamental goal of evolutionary biology and behavioral ecology. Population-level patterns of mate acquisition and offspring production, otherwise known as the genetic mating system, play a central role in the sexual selection on morphological and behavioral traits and may facilitate speciation. The central hypothesis of this research is that variation in environmental conditions, such as temperature, turbidity, and habitat, and demographic influences such as population density, sex ratios and temporal availability of mates, may limit mating and reproductive success in a predictive manner. Therefore the goal of this dissertation is to examine the contributions of geographic and temporal variation on the plasticity of the genetic mating system in two species of pipefish. The first study examined whether meaningful variation in the genetic mating system exists between two natural populations of the dusky pipefish, Syngnathus floridae. Results of this investigation provide evidence that the genetic mating system differs among different geographic locations. The second study considered the relative contributions of environmental conditions and population demographics on differences in the genetic mating system of dusky pipefish from five natural populations. The results of this investigation show strong trends for demographic and environmental factors to strongly influence the genetic mating system between populations. The third study considered how variation in the number of available mates predicts the outcome of sexual selection during the course of a breeding season in the broad-nosed pipefish, Sygnathus typhle. The results of this study indicate a strong influence of the operational sex ratio on the genetic mating system. In addition to these studies, a study was conducted to investigate whether phylogeographic relationships may be responsible for geographic variation in the genetic mating system of the dusky pipefish of pipefish. Mitochondrial DNA analysis does not substantiate subspecies designations for this species and microsatellite analysis show a clear pattern of isolation by distance. Taken together, these studies significantly enhance the understanding of how mating systems are organized over broad environmental gradients and temporal/spatial scales and to the evolution of sexual selection on the whole.

Thesis (Ph. D.)--University of Alabama at Birmingham, 2009. / Title from PDF title page (viewed Feb. 1, 2010). Additional advisors: Ken Marion, David C. Rostal, Robert W. Thacker, Jeanette Wyneken. Electronic data (1 file : 10.93 mb). Includes bibliographical references (p. 13-18).

It is well established that epigenetic modifications to the genome are crucial for the exquisite control of gene expression required for an organism to develop and differentiate. These modifications are maintained through mitotic rounds of cell division, but must be cleared and reset through meiosis in order for the cells of the early embryo to achieve totipotency. Although we know these mechanisms exist, the rules determining which modifications are established where on the genome and the genes involved in these processes remain poorly characterised. Much of what is known about epigenetic processes has come from studies in non-mammalian organisms, such as Drosophila. However, in our laboratory we have developed a mammalian system for identifying modifiers of epigenetic gene silencing. An ENU mutagenesis screen is being carried out using an inbred mouse line carrying a GFP transgene, with an erythroid-specific promoter, that is particularly sensitive to changes in epigenetic modifications. Currently, 14 mutant lines that display a heritable shift in GFP expression have been recovered. These have been termed Modifiers of Murine Metastable Epialleles (Mommes). When I began my PhD in 2005, we had not identified any of the mutations underlying the phenotypes observed. To confirm the efficacy of the screen, I have tested the effect of heterozygosity for null alleles of two known epigenetic modifiers, Dnmt3a and Dnmt3b, on expression of the GFP transgene. Heterozygosity for the Dnmt3b knockout allele does shift expression while heterozygosity for the Dnmt3a knockout allele does not. This highlights the limitations of the screen. With this particular screen we will only detect modifiers that are expressed during haematopoiesis in the bone marrow. I have also worked on MommeD5. MommeD5 is a semi-dominant, homozygous embryonic lethal mutation that acts as an enhancer of variegation. I have found that the MommeD5 allele carries a 7 bp deletion in the major histone deacetylase, Histone deacetylase 1 (Hdac1), and this significantly alters the C-terminus of the mutant protein. The finding of Hdac1 attests to the screen design. The MommeD5 homozygous mutants die at approximately the same time as the published knockout of Hdac1 and the heterozygous mutants show increased levels of Hdac2 and acetylated histone H3, as reported in Hdac1-deficient embryonic stem cells. In addition, I have studied the effect of heterozygosity for each of the mutations on the phenotype of the mouse. In general, heterozygous Momme mutants are viable and fertile, but show subtle abnormal phenotypes. However, in the case of MommeD5 none were observed and this may relate to the compensatory upregulation of other histone deacetylases. In the case of Dnmt3a and Dnmt3b a sex ratio distortion is seen in the colonies, with less males seen than expected. Also, Dnmt3a heterozygous mutant males that inherited the mutant allele from the dam are smaller and show an increased range of body weights compared to their wild-type male littermates. This may be an example of intangible variation, i.e. phenotypic variation observed in isogenic individuals raised in standardised environments. These results suggest that epigenetic mechanisms have a role in intangible variation, also known as developmental noise. Despite the fact that it is now acknowledged by many that stochastic events occur at the level of the cell, the idea that it can happen at the level of the whole organism is rarely considered.