京都大学 / 0048 / 新制・課程博士 / 博士(農学) / 甲第19025号 / 農博第2103号 / 新制||農||1030(附属図書館) / 学位論文||H27||N4907(農学部図書室) / 31976 / 京都大学大学院農学研究科応用生命科学専攻 / (主査)教授 加納 健司, 教授 植田 和光, 教授 植田 充美 / 学位規則第4条第1項該当 / Doctor of Agricultural Science / Kyoto University / DFAM

Biocompatibility is an important issue for the development of chromatographic stationary phases for the analysis of biomolecules (including proteins and peptides). A biocompatible stationary phase material is a material that resists nonspecific adsorption of biomolecules and does not interact with them in a way that would alter or destroy their structures or biochemical functions. The monolithic column format is a good alternative to typical spherical particle packed columns for capillary liquid chromatography of biomacromolecules. Several novel anion-exchange polymer monoliths for the analysis of proteins were synthesized for improved biocompatibility. Two novel polymeric monoliths were prepared in a single step by a simple photoinitiated copolymerization of 2-(diethylamino)ethyl methacrylate and polyethylene glycol diacrylate (PEGDA), or copolymerization of 2-(acryloyloxy)ethyl trimethylammonium chloride (AETAC) and PEGDA, in the presence of selected porogens. The resulting monoliths contained functionalities of diethylaminoethyl (DEAE) as a weak anion exchanger and quaternary amine as a strong anion exchanger, respectively. An alternative weak anion exchange monolith with DEAE functionalities was also synthesized by chemical modification after photoinitiated copolymerization of glycidyl methacrylate (GMA) and PEGDA. The dynamic binding capacities of the three monoliths were comparable or superior to values that have been reported for various other monoliths. Chromatographic performances were also similar to those provided by a modified poly(GMA-co-ethylene glycol dimethacrylate) monolith. Separations of standard proteins were achieved under gradient elution conditions using these monolithic columns. This work represents a successful attempt to prepare functionalized monoliths via direct copolymerization of monomers with desired functionalities. Compared to earlier publications, laborious surface modifications were avoided and the PEGDA crosslinker improved the biocompatibility of the monolithic backbone. Protein separations by capillary size exclusion chromatography (SEC) require a monolith that is biocompatible, has sufficient pore volume, has the appropriate pore size distribution, and is rigid. Most polymer monoliths have not possessed a biomodal pore-size distribution, i.e., especially with one distribution in the macropore region and the other in the mesopore region. Furthermore, non-specific adsorption of proteins in these stationary phases has persisted as a major unresolved problem. To overcome these difficulties, a porous poly[polyethylene glycol methyl ether acrylate (PEGMEA)-co-PEGDA] monolith which can resist adsorption of both acidic and basic proteins when using an aqueous buffer without any organic solvent additives was developed. Based on this biocompatible monolith, surfactants were introduced as porogens with the hope of significantly increasing the mesopore volume within the polymer. Two types of surfactants were studied, including poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) (PEO-PPO-PEO) or PPO-PEO-PPO and Brij. Pore size distributions were examined using a well-defined molecular weight range series of proteins and peptides by inverse size exclusion chromatography, which indicated relatively large volume percentages of mesopores and micropores. The two new monoliths demonstrated different SEC behaviors, low nonspecific adsorption of proteins, and high mechanical rigidity. High density lipoprotein (HDL) is a heterogeneous class of lipoprotein particles with subspecies that differ in apolipoprotein and lipid composition, size, density, and charge. In this work, I developed a new capillary SEC method for size separation of native HDL particles from plasma using a capillary packed with BioSep-SEC-4000 particles, Three major sizes of HDL particles were separated. Additionally, capillary SEC and capillary strong anion-exchange chromatography of non-delipidated HDL were accomplished using poly(PEGMEA-co-PEGDA) and poly(AETAC-co-PEGDA) monoliths. These new LC methods using packed and monolithic stationary phases provided rapid separation of HDLs and excellent reproducibility.

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Vätskekromatografi är vanligt förekommande metod för separationer av molekyler inom bioteknik. Det finns inom begreppet vätskekromatografi många olika tekniker och vilken specifik teknik som är mest lämplig för en given separation beror på egenskaperna hos den avsedda målmolekylen. Egenskaper för vilka målmolekyler kan separeras är bland annat storlek, laddning och affinitetsintreaktioner. Porositeten är i den stationära fasen en avgörande egenskap, eftersom porernas tillgänglighet påverkar den stationära fasens tillgängliga yta. Således är förmågan att bestämma porositeten en avgörande aspekt vid tillverkningen av den stationära fasen. Agaros utgör ofta den stationära fasen, på grund av modifieringsmöjligheterna hos polysackaridkedjorna.  Bio-Works Workbeads 40/1000 SEC är agarbaserade pärlor för den stationär fas i storleksutslutningskromatografi. Pärlorna är tvärbundna två gånger för att få tillräcklig styvhet och för att uppnå en önskad fördelningskoefficient. Det första tvärbindningssteget bestämmer strukturen på pärlorna och därmed porositeten, medan det andra tvärbindningssteget försäkrar att pärlorna får tillräcklig styvhet. För produkten Workbeads 40/1000 är de önskade fördelningskoefficienterna mellan 0,2-0,35 för thyroglobulin, 0,62-0,75 för albumin (från äggvita) och 0,85-0,95 för ribonukleas A. För att bestämma förhållandet mellan koncentrationerna av reaktanterna NaOH och allylbromid i den första tvärbindningen och de resulterande egenskaperna hos den stationära fasen (fördelningskoefficienter, styvhet och porstorlek) ändrades koncentrationerna av reaktanterna i den första tvärbindningen. Samtliga resulterande pärlorna med de ändrade koncentrationerna analyserades med hjälp av en ÄKTAexplorer. Pärlornas styvhet bestämdes genom att analysera kraschflödet i den packade bädden. Det fanns inga tecken på några skillnader mellan de tillverkade pärlproverna. De icke-specifika interaktionerna analyserades genom att jämföra fördelningskoefficienterna i en standard PBS-buffert med en hög saltkoncentrationsbuffert. Polaritetsförändringen i den mobila fasen kan påverka de icke-specifika interaktionerna eftersom hydrofobiska interaktioner då främjas. Fördelningskoefficienternas kurvor jämfördes också för att analysera likheter och skillnader för olika proteiner. Skillnader i formen på fördelningskoefficientkurvorna kan innebära att porstorleken inte är den enda bidragsfaktorn till skillnaderna i fördelningskoefficienterna. Därför kan skillnaden innebära effekter av icke-specifika interaktioner och det fanns det indikationer på att vissa icke-specifika interaktioner uppstod mellan proteinerna och agarpärlorna. Det finns dock ingen skillnad mellan de pärlor med många tvärbindningar och de med få tvärbindningar. Porstorleken och porstorleksdistribution bestämdes genom att använda en uppsättning dextran med inverterad storleksutslutningskromatografi.  Efter varje tvärbindningsreaktioner bestämdes antalet bildade tvärbindningar genom titrering med silvernitrat. Det visade sig att koncentrationen av allylbromid hade en större inverkan på de resulterande egenskaperna jämfört med koncentrationen av NaOH. En ökad koncentration av allylbromid visade på ett ökat antal bildade tvärbindningar. Experiment med många bildade tvärbindningar visade sig ha en större porstorlek och högre fördelningskoefficienten jämfört med experiment med lägre mängd bildade tvärbindningar. / Liquid chromatography is a method that is extensively used for separations in biotechnology at present. There are many different techniques within the concept of liquid chromatography and which specific technique that is most suitable depends on the properties of the intended target molecule. Properties for which target molecules can be separated are among others, size, charge, and affinity interactions. The porosity is a crucial property of the chromatographic resin, as the accessibility of pores determines the accessible surface area of the resin. Thus, the ability to determine the porosity is a crucial aspect in the manufacturing of the resin. Agarose often constitutes the chromatographic resin, due to the modification possibilities of the polysaccharide chains.  Bio-Works Workbeads 40/1000 SEC are agar-based size exclusion chromatography beads. The beads are cross-linked twice in order to obtain sufficient rigidity and to achieve a desired distribution coefficient. The first cross-linking step determines the structure of the beads thereby stets the porosity and the second cross-linking step ensures a sufficinet rigidity. For the product Workbeads 40/1000 the desired distribution coefficients is between 0.2-0.35 for thyroglobulin, 0.62-0.75 for albumin (from egg white) and 0.85-0.95 for ribonuclease A. To determine the relation between the concentrations of two reactants NaOH and allyl bromide in the first cross-linking step and the resulting properties of the resin (distribution coefficients, rigidity, and pore size), the concentrations in the first cross-linking were changed. All resulting beads with the altered reactant concentrations were analyzed using an ÄKTAexplorer. The rigidity of the beads was determined by analyzing the crash flow rate of the packed bed. There were no indications of any differences between the manufactured resin samples. The non-specific interaction was analyzed by comparing the distribution coefficients in a standard PBS buffer to a high salt concentration buffer. The polarity change in the mobile phase might affect the non-specific interactions since hydrophobic interactions would be promoted. The distribution coefficient curves were also compared for similarities and differences between different proteins. Differences in the shape of the distribution coefficient curves might imply that the pore size is not the only contribution factor to the distribution coefficient differences. Hence, the difference might imply the effect of non-specific interactions. It was indicated that some non-specific interactions occurred between the proteins and the agar beads. However, there was no difference between beads of varying cross-linking degree. The porosity and pore size distribution were determined by utilizing a set of dextran’s with Inverse Size Exclusion Chromatography (ISEC). After each cross-linking step the number of cross-links was determined by titration with silver nitrate (AgNO3). It was shown that the concentration of allyl bromide had a greater impact on the resulting properties compared to the concentration of NaOH. An increased concentration of allyl bromide showed increased number of formed cross-links. Experiments with many formed cross-links was shown to have a larger pore size and higher distribution coefficient Kd compared to experiments with lower amount of formed cross-links.

This dissertation focuses on the synthesis and characterization of functional poly(2-ethyl-2-oxazoline) (PEtOx) containing homo- and block copolymers that are potential materials for membrane-based water purification and gas separation, drug delivery, magnetic resonance imaging and tissue engineering applications. The polymerization of 2-ethyl-2-oxazoline (EtOx) was investigated with regard to the effects of initiator structures and reaction parameters such as polymerization time and temperature on molecular weight control and molecular weight distribution, endgroup functionality, living characteristics, and mechanism and kinetics. The structure of initiators was shown to significantly affect the molecular weight control and molecular weight distribution of PEtOx oligomers. Methyl triflate initiated polymerizations were found to result in oligomers with low polydispersity (PDI) values around 1.10-1.15 and symmetrical chromatograms were obtained via size exclusion chromatography (SEC) studies with the use of refractive index, light scattering and viscosity detectors. However, EtOx polymerizations initiated by halide containing initiators such as benzyl chloride, dibromo- and diiodo-p-xylene, and vinylsilylpropyl iodides yielded PEtOx oligomers with higher PDI values ~ 1.30-1.40. Higher molecular weight distributions can be attributed to the presence of covalent species during polymerization and slower initiation rate as evidenced by kinetic studies when compared to PEtOx prepared from methyl triflate initiators. In all cases, termination reactions with aliphatic cyclic amines were quantitative. Mono- and diamine functional PEtOx oligomers with controlled molecular weight and excellent end-group functionality may be used as prepolymers for incorporation into multiblock and graft copolymer and crosslinked structures for a variety of applications such as membranes and hydrogels for tissue engineering matrices. Poly(2-ethyl-2-oxazoline) containing block copolymers were prepared using the macroinitiator method. First, amphiphilic triblock copolymers with hydrophobic poly(arylene ether sulfone) (PSF) central block and hydrophilic PEtOx side blocks were synthesized via polymerization of EtOx sequences from tosylate functional telechelic PSF macroinitiators. PSFs are well-known engineering thermoplastics with excellent resistance to hydrolysis and oxidation, as well as displaying good mechanical properties, thermal stability and toughness. Phenol functional PSFs were prepared via step-growth polymerization of dichlorodiphenylsulfone and bisphenol-A (slight excess) monomers. Phenolic chain ends were then converted to aliphatic hydroxyethyl endgroups by reaction with ethylene carbonate. Upon treatment with p-toluenesulfonyl chloride, tosylate functional PSF macroinitiators were prepared. PEtOx-b-PSF-b-PEtOx triblock copolymers (pendent acyl groups of PEtOx side blocks) were partially hydrolyzed in an acidic medium to introduce random charged poly(ethylene imine) units to prepare ionomer structures that may show good salt rejection, water flux and antibacterial properties for membrane-based water purification applications. Phosphonic acid modified poly(ethylene oxide)-b-poly(2-ethyl-2-oxazoline) (PEO-b-PEtOx) diblock copolymers were prepared via cationic ring opening polymerization of EtOx monomers from tosylate functional PEO macroinitiators and subsequent functionalization reactions on the polyoxazoline block. Post-modification reactions included controlled partial pendent acyl group hydrolysis under an acidic medium to form the random block copolymers of PEtOx and poly(ethyleneimine) (PEI), Michael addition of diethylvinyl phosphonate groups to PEI units and hydrolysis of the ethyl groups on the phosphonates to yield pendent phosphonic acid groups on the polyoxazoline block. After each step of functionalization reactions, structures and compositions were confirmed utilizing 1H NMR and the degree of phosphorylation was found to be > 95%. Both PEO and PEtOx are biocompatible polymers and the anionic quality of the phosphonic acid has the potential to be pH controllable and provide an environment where cationic drugs and contrast agents can be attached. Thus, these polymers have potential as drug carriers and contrast enhancement agents for magnetic resonance imaging applications. / Ph. D.

The main focus of the PhD study was to develop new gel electrophoresis and ICP-MS based methods to analyze a wide variety of the bio-molecules such as proteins, phosphoproteins and metalloproteins etc. The tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis (tricine-SDS-PAGE) method is commonly used to resolve low molecular mass proteins, however, it requires a high percentage gel and a very complicated procedure to achieve this separation. This study describes a modification to tricine-SDS-PAGE to make it more effective for the separation of smaller proteins and for coupling to ICP-MS. The modified method employs low percentage PAGE gels and low reagent concentrations that provide efficient separations, good quantitation and low matrix levels that are compatible with ICP-MS. This modified method was applied to analyze phosphopeptides. Phosphopeptides are very small in size and difficult to separate using the other techniques such as Laemmli SDS-PAGE, original tricine-SDS-PAGE, immobilized metal affinity chromatography (IMAC), size exclusion chromatography (SEC) etc. In this study a simplified procedure is described based on modifying the original tricine-SDS-PAGE method. A comparative study showed that this modified method successfully resolved a digest mixture of very low to high molecular mass phosphopeptides/peptides. In off-line coupling of this method with ICP-MS, much better recoveries of the peptides from the gel were obtained as compared to traditional methods which indicate the compatibility of this modified method for quantitative studies. An on-line coupling of the modified system with ICP-MS was also demonstrated and it was applied for the separation, detection and quantification of phosphopeptides. Another application of this modified system was the separation of serum proteins. Blood serum contains five major protein groups i.e., albumin, alpha-1 globulin, alpha-2 globulin, beta globulin and gamma globulin. The separation of these five major proteins in a single gel is difficult to achieve using traditional methods. The modified system was shown to be superior for the separation of these serum proteins in a 7% (m/v) native-PAGE gel and a cellulose acetate membrane. A further study was carried out into controlling the factors that cause metal loss and protein fragmentation in SDS-PAGE. Using a reducing sample buffer, and heating to high temperatures (90-100ºC) in alkaline or acidic conditions may cause protein fragmentation and decrease the metal binding affinity. 70ºC was found suitable to prepare the sample at neutral, alkaline or acidic pH as no fragmentation observed. To prevent metal loss, the binding constant (log K) values of metal-amino acids, play the major role. Those metals which have high binding affinities with the amino acids in proteins can also be affected by the variation of the pH so prior information about pH to maintain the binding constant values is essential to minimize metal loss. This was observed in the loss of zinc, and to a lesser extent copper from human serum albumin (HSA) as measured by inductively coupled plasma mass spectrometry (ICP-MS). The method described above was applied for the separation and quantification of the serum proteins obtained from age-related macular degeneration (AMD) patients (where the AMD patients were from Moorfields Eye Hospital, London). Zn and Cu were quantified employing external calibration. Zn concentration showed variation whilst Cu did not show any significant variations in samples from AMD patients. A brief study of the interaction of cisplatin and oxaliplatin with HSA and transferrin was also performed. Cisplatin bound much faster than oxaliplatin with HSA. After 24 hours incubation, cisplatin showed a decrease in signal intensity which indicates that cisplatin binding decreases with time. Cisplatin binding with transferrin as compared to HSA was not significant, which could be the result of unstable Pt-transferrin complex formation. Oxaliplatin did not show high binding to either protein, perhaps due to the presence of the bulky, non polar DACH ligand.

: L’une des méthodes qui consiste à optimiser la production d’hydrocarbure est basée sur l’injection d’eau, viscosifiée par addition de polymères de type polyacrylamides, afin d’améliorer l’extraction de pétrole (RAH). Or, les propriétés viscosifiantes des polymères dépendent de leurs masses molaires. L’enjeu de ce travail de thèse a donc été de mettre en place de nouvelles méthodes pour la détermination de larges distributions en masses molaires et de grande dispersité, caractéristiques propres aux échantillons d’intérêt industriel dans le domaine pétrolier. La stratégie d’analyse retenue repose sur la chromatographie d’exclusion stérique (CES) et le fractionnement par couplage flux force (A4F) couplés à la diffusion de lumière et à la réfractométrie. Des polymères modèles ont été synthétisés par un procédé de polymérisation par transfert de chaîne réversible par addition fragmentation (RAFT/MADIX). Cela a permis d’obtenir des polymères dans une gamme de masses molaires comprises entre 103 et 107 g/mol et avec une dispersité inférieure à 1,4. Via l’utilisation de ces polymères, les performances et limites des deux méthodes séparatives investies ont été évaluées. Les conditions opératoires en A4F ont été déterminées et cette méthode s’est avérée être adaptée à l’analyse de polymères industriels distribués sur 3 décades de masses molaires. Au delà de l’analyse dimensionnelle, le couplage avec l’A4F a également permis une analyse conformationnelle. / One method for optimizing the production of hydrocarbon is based on the injection of water, viscosified by the addition of polymers such as polyacrylamides, in order to enhance the oil extraction (EOR). The viscosifying properties of polymers depend on their molecular masses. The aim of this thesis was therefore to develop new methods for determining wide molecular mass distributions and high dispersity, which are specific characteristics of samples of industrial interest in the oil sector. The analytical strategy used is based on size exclusion chromatography (SEC) and flow field flow fractionation (A4F), coupled to light scattering and refractometer. Model polymers were synthesized by a polymerization process by reversible addition fragmentation chain transfer (RAFT/MADIX). This allowed to obtain polymers in a range of molar masses between 103 and 107 g / mol and with a dispersity lower than 1.4. Through the use of these polymers, the capabilities and limitations of the two separation methods invested were evaluated. The A4F operating conditions were determined and this method has proved to be adapted to the analysis of industrial polymers distributed over 3 decades of molecular masses. Beyond the dimensional analysis, A4F-based coupling also allowed conformational analysis.

Externally initiated o-tolyl initiated poly(3-hexylthiophene) (P3HT) was synthesized according to Grignard metathesis polymerization at varying chain length to compare number average molecular weights (Mn) obtained by gel permeation chromatography (GPC) and 1H NMR end group analysis. The extent of overestimation by GPC (1.3) was determined to be lower than previously reported for low Mn polymers. However, an apparent GPC quantification limit was observed as NMR Mn correlated well to predicted results. Static light scattering studies on high Mn polymers provided evidence that the true molecular weight was more similar to GPC-derived Mn. Despite nearly 100% external initiation efficiency, at a certain Mn limit new uninitiated chains may be synthesized. It is suggested that the synthesis of externally initiated P3HT should be limited to Mn below 40 kDa to ensure fully externally initiated chains. A proposal for the synthesis of externally initiated macrocyclic P3HT will also be discussed.

Externally initiated o-tolyl initiated poly(3-hexylthiophene) (P3HT) was synthesized according to Grignard metathesis polymerization at varying chain length to compare number average molecular weights (Mn) obtained by gel permeation chromatography (GPC) and 1H NMR end group analysis. The extent of overestimation by GPC (1.3) was determined to be lower than previously reported for low Mn polymers. However, an apparent GPC quantification limit was observed as NMR Mn correlated well to predicted results. Static light scattering studies on high Mn polymers provided evidence that the true molecular weight was more similar to GPC-derived Mn. Despite nearly 100% external initiation efficiency, at a certain Mn limit new uninitiated chains may be synthesized. It is suggested that the synthesis of externally initiated P3HT should be limited to Mn below 40 kDa to ensure fully externally initiated chains. A proposal for the synthesis of externally initiated macrocyclic P3HT will also be discussed.