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Understanding how diversity is partitioned along natural and anthropogenic gradients within ecosystems is important to predict the persistence of species and the ecological functions they provide. Dottybacks (Pseudochromidae) are a diverse group of mesopredators that feed on cryptic macroinvertebrates and newly recruited fishes. This diet behavior may modify the composition and abundance of cryptobenthic fauna within coral reef ecosystems. Understanding how mesopredators partition their diet and the functional role provided by available prey within reefs can assist in understanding the ecological role these predators contribute to coral reef trophodynamics and the effect of their population changes on the reef ecosystem. To assess the diet of three common Pseudochromis species and two distinct color morphs of P. flavivertex in the Red Sea, I used a combination of i) visual stomach content analysis, ii) stomach DNA metabarcoding (18S, COI), and iii) stable isotope analysis (δ15N, δ13C). I evaluated i) dietary niche breadth, ii) variation in diet composition, iii) degree of dietary specialization, and iv) trophic level. These techniques revealed partitioning in the dietary composition and resource use between P. flavivertex, P. fridmani, and P. olivaceus. Although the two technics used for stomach content analysis did not show differences in the dietary composition within color morphs of P. flavivertex, the isotopic signature showed marked differences in the isotopic niche and resource use between morphs. Resource partitioning appears to be driven by variation in resource availability in the fish habitat and by subtle differences in the ecology of these species. These findings provide evidence of species-specific differences in the trophic ecology of pseudochromids in the Red Sea and demonstrate their important role as predators of cryptic invertebrates and small fish, being key components in energy transfer in coral reef ecosystems by acting as a link between cryptofauna and higher trophic levels. This study highlights the importance of combining several approaches (short-term: visual analysis and DNA metabarcoding; and long-term: isotope analysis) when assessing the feeding habits of coral reef fish, as they provide different and complementary information necessary to delimit their niches and understand the role that small mesopredators play in coral reef ecosystems.

The national mammal of the United States, the American Bison (Bison bison) was once nearly extinct. Populations have recovered to the degree that thousands roam the Great Plains today. Due to their large numbers and body size, this species has an oversized impact on the ecological communities where it lives and is considered a keystone herbivore in modern North American grasslands. This study explores the detailed, seasonally resolved, paleoecology of seven bison from the Greater Yellowstone Ecosystem during the Late Holocene through stable isotope analyses and species niche modeling. Isotopic analyses of δ13C, δ15N, and δ18O reveal that bison within high elevations regularly foraged on C3 vegetation while traveling among the valleys and ridges of ecoregions similar to those of modern-day. Species distribution models provide a bimodal niche, with best-suited temperatures of 4-8°C and 16-26°C, and topographic ranges of 250-800m and 2,000-4000m.

Red Alder (Alnus rubra) is a native coastal hardwood in British Columbia and has evolved a symbiotic relationship with the nitrogen-fixing actinomycete, Frankia. This research uses δ15N signatures in soils, wood and litter to assess the contribution of nitrogen-fixing Red Alder to the components of stand nitrogen budgets. The stands used in this study are part of the B.C. Ministry of Forests’ long-term Experimental Project 1121.01 which examines the interactions between conifers and Red Alder. Planted in 1994, the Holt Creek site contains stands of Douglas-fir and Red Alder in five proportions (Red Alder: Douglas-fir proportions: 100/0, 50/50, 25/75, 11/89, 0/100). Increment cores from 5 trees per species per plot were taken along with soil and litter samples and analyzed for essential mineral elements and δ15N. I hypothesized that Red Alder would enhance soil nitrogen stocks and elevate δ15N signatures and that these changes would be observable in the δ15N signature of the tree rings of both species. Forest floor soil under Red Alder in the 100/0 plot was enriched in total nitrogen, and δ15N was elevated. This was due to the addition of nitrogen-rich litter, like followed by nitrogen discrimination in the forest floor during the process of nitrate leaching or denitrification. The litter of the two species did not differ in δ15N. The effect of forest floor nitrogen enrichment was visible in the tree rings of Douglas-fir in the 50/50 stand confirming that the effect of fixed-nitrogen can be observed in non-fixing species. Red Alder tree ring δ15N exhibited an unexpected non-linear relationship with time that could be due to reduced nitrogen fixation associated with declining tree vigour or negative feedback from low soil pH. This research provides insight into nitrogen fixation by Red Alder over time and its influence on pure and mixed stand nitrogen budgets. / Graduate / 2023-09-09

<p>Carbon and nitrogen isotope values in sequential segments of human hair keratin provide an archive of temporal fluctuations in isotopic composition close to the time of an individual’s death. By combining stable isotope analysis with a microscopic examination of hair, this thesis explores health status prior to the death of early settlers from St. Thomas’ Anglican Church cemetery in Belleville, Ontario (1821-1874). The purpose of this thesis is to determine if there is a consistent difference in carbon and nitrogen isotopic signatures along sequentially segmented hair in individuals who have observable pathological conditions versus individuals who display no osteological evidence of pathology. Elevated nitrogen values can be associated with physiological stressors such as chronic illness, infection, or injury that affect an individual’s metabolic state. Elevated nitrogen values represent a recycling of nitrogen derived from the breakdown of existing proteins in the body and subsequent tissue repair. Results from 10 individuals indicate that δ¹⁵N values increase greater than 1‰ if an individual was suffering from a pathological condition (e.g., periostitis) or decrease by 1‰ if an individual was possibly pregnant, while δ¹³C values remained relatively constant. The variability in nitrogen values over 1‰, coinciding with less change in δ¹³C values, may be indicative of physiological stress. These results suggest that δ¹⁵N values are not only useful for studying diet, but may also be used as indicators of physiological stress.</p> / Master of Arts (MA)

Earth's near-surface environment sustains nearly all terrestrial life, yet this critical zone is threatened by the environmental migration of new and potentially harmful compounds produced to support a growing human population. Traditional transport equations often fail to capture the environmental behavior of these emerging contaminants due to issues such as flow heterogeneity. Thus, there is a need to better evaluate controls on pollutant partitioning in Earth's critical zone. Our first study investigated the transport and distribution of the neonicotinoid insecticide thiamethoxam (TMX) by growing TMX-coated corn seeds in coarse vs fine-textured soil columns maintained with versus without growing corn plants. Fine-textured soil transported TMX at concentrations that were two orders of magnitude higher than coarse-textured soil, due to preferential flow in the fine-textured soil columns and higher evapotranspiration (ET) concentrating more TMX in the coarse-textured soil. Living plants increased the concentration of TMX at depth, indicating that growing plants may drive preferential transport of neonicotinoids. For the second study we planted TMX-coated corn seeds and maintained field plots with and without viable crops (n = 3 plots per treatment), measuring TMX concentrations in three hydrological compartments (surface runoff, shallow lateral flow, and deep drainage) and soil. TMX was transported in the highest concentrations via surface runoff, while also showing continual migration within the subsurface throughout the growing season. Plants facilitated downward migration of TMX in soil yet restricted losses in drainage. For our final study, we used a simple isotope mixing method to evaluate how preferential flow alters the influence of compound chemical properties on solute transport. We applied deuterium-labeled rainfall to plots containing manure spiked with eight veterinary antibiotics with a range of mobility, and quantified transport to suction lysimeters (30 and 90 cm). We showed that low preferential flow (<20%) eliminates the influence of compound chemical properties and, contrary to conventional understanding, more preferential flow (~ >20%) amplifies these chemical controls, with more mobile compounds appearing in significantly higher concentrations than less mobiles ones. Altogether, we provide a refined understanding of solute partitioning in the critical zone necessary to improve process-based transport modeling. / Doctor of Philosophy / Earth’s near-surface environment sustains nearly all terrestrial life, yet this critical zone is threatened by the environmental migration of new and potentially harmful pollutants produced to support a growing human population. Additionally, traditional mathematical methods fail to accurately describe the behavior of these emerging pollutants in soils due to complex flow patterns. Thus, scientists need to better understand how these pollutants contaminate water bodies in the critical zone. We first conducted a greenhouse experiment to understand and measure the amount of the neonicotinoid insecticide thiamethoxam (TMX) that could move from coated corn seeds through the soil environment. Water draining from fine-textured soil had >100 times more TMX than water draining from course-textured soil, due to commonly occurring fractures/cracks in the finer-particle soil and more evaporation from soil and plant leaves sequestering TMX in the sandy soil. Growing plants amplified TMX movement through soil voids to lower depths. We then conducted a field study to determine how much TMX could move to the surrounding environment throughout the corn growing season. We found that plants aided in downward movement of TMX yet restricted total losses from the plot overall by removing soil water. Our third study investigated the degree to which chemical pollutant properties control movement of solutes when water flows preferentially through soil void space. Common dairy manure was spiked with eight pollutants ranging in chemical attraction to soil and was added to an agricultural field. After irrigation, we found that when total drainage water was less than 20% derived from preferential flow, chemical properties had a negligible effect on the amount of pollutant in draining soil water. Contrary to conventional understanding, when draining water contained more than 20% preferential flow, chemical properties had a strong influence on the amount of pollutant detected. Altogether, we provide new understanding of how solutes move though the critical zone. These findings are necessary to create mathematical tools that more accurately depict pollutant behavior below-ground.

No / Dietary ecology is one key to understanding the biology, lifeways, and evolutionary pathways of many animals. Determining the diets of long-extinct hominins, however, is a considerable challenge. Although archaeological evidence forms a pillar of our understand-ing of diet and subsistence in the more recent past, for early hominins, the most direct evidence is to be found inthe fossils themselves. Here we review the suite of emerging biochemical paleodietary tools based on stable isotopeand trace element archives within fossil calcified tissues.We critically assess their contribution to advancing our understanding of australopith, early Homo, and Neander-thal diets within the broader context of non-biogeochemical techniques for dietary reconstruction, such as mor-phology and dental microwear analysis. The most signifi-cant outcomes to date are the demonstration of hightrophic-level diets among Neanderthals and Late Pleistocene modern humans in Glacial Europe, and the persis-tent inclusion of C4 grass-related foods in the diets of Plio¿Pleistocene hominins in South Africa. Such studies clearly show the promise of biogeochemical techniques for testing hypotheses about the diets of early hominins.Nevertheless, we argue that more contextual data from modern ecosystem and experimental studies are needed if we are to fully realize their potential.