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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Improving the Modeling Framework for DCE-MRI Data in Hepatic Function Evaluation

Mossberg, Anneli January 2013 (has links)
Background Mathematical modeling combined with prior knowledge of the pharmacokinetics of the liver specific contrast agent Gd-EOB-DTPA has the potential to extract more information from Dynamic Contrast Enhanced Magnetic Resonance Imaging (DCE-MRI) data than previously possible. The ultimate goal of that work is to create a liver model that can describe DCE-MRI data well enough to be used as a diagnostic tool in liver function evaluation. Thus far this goal has not been fully reached and there is still some work to be done in this area. In this thesis, an already existing liver model will be implemented in the software Wolfram SystemModeler (WSM), the corresponding modeling framework will be further developed to better handle the temporally irregular sampling of DCE-MRI data and finally an attempt will be made to determine an optimal sampling design in terms of when and how often to collect images. In addition to these original goals, the work done during this project revealed two more issues that needed to be dealt with. Firstly, new standard deviation (SD) estimation methods regarding non-averaged DCE-MRI data were required in order to statistically evaluate the models. Secondly, the original model’s poor capability of describing the early dynamics of the system led to the creation of an additional liver model in attempt to model the bolus effect. Results The model was successfully implemented in WSM whereafter regional optimization was implemented as an attempt to handle clustered data. Tests on the available data did not result in any substantial difference in optimization outcome, but since the analyses were performed on only three patient data sets this is not enough to disregard the method. As a means of determining optimal sampling times, the determinant of the inverse Fisher Information Matrix was minimized, which revealed that frequent sampling is most important during the initial phase (~50-300 s post injection) and at the very end (~1500-1800 s). Three new means of estimating the SD were proposed. Of these three, a spatio-temporal SD was deemed most reasonable under the current circumstances. If a better initial fit is achieved, yet another method of estimating the variance as an optimization parameter might be implemented.    As a result of the new standard deviation the model failed to be statistically accepted during optimizations. The additional model that was created to include the bolus effect, and therefore be better able to fit the initial phase data, was also rejected. Conclusions The value of regional optimization is uncertain at this time and additional tests must be made on a large number of patient data sets in order to determine its value. The Fisher Information Matrix will be of great use in determining when and how often to sample once the model has achieved a more acceptable model fit in both the early and the late phase of the system. Even though the indications that it is important to sample densely in the early phase is rather intuitive due to a poor model fit in that region, the analyses also revealed that the final observations have a relatively high impact on the model prediction error. This was not previously known. Hence, an important measurement of how suitable the sampling design is in terms of the resulting model accuracy has been suggested. The original model was rejected due to its inability to fit the data during the early phase. This poor initial fit could not be improved enough by modelling the bolus effect and so the new implementation of the model was also rejected. Recommendations have been made in this thesis that might assist in the further development the liver model so that it can describe the true physiology and behaviour of the system in all phases. Such recommendations include, but are not limited to, the addition of an extra blood plasma compartment, a more thorough modelling of the spleen’s uptake of the contrast agent and a separation of certain differing signals that are now averaged.
2

Systèmes intégrés pour l'hybridation vivant-artificiel : modélisation et conception d'une chaîne de détection analogique adaptative / Embedded systems for the interfacing of electronics and biology : modeling and designing an analog adaptive detection chain

Rummens, François 01 December 2015 (has links)
La bioélectronique est un domaine transdisciplinaire qui oeuvre, entre autres, àl’interconnexion entre des systèmes biologiques présentant une activité électrique et le mondede l’électronique. Cette communication avec le vivant implique l’observation de l’activitéélectrique des cellules considérées et nécessite donc une chaine d’acquisition électronique.L’utilisation de Multi/Micro Electrodes Array débouche sur des systèmes devantacquérir un grand nombre de canaux en parallèle, dès lors la consommation etl’encombrement des circuits d’acquisition ont un impact significatif sur la viabilité dusystème destiné à être implanté.Cette thèse propose deux réflexions à propos de ces circuits d’acquisition. Une ces desréflexions a trait aux circuits d’amplification, à leur impédance d’entrée et à leurconsommation ; l’autre concerne un détecteur de potentiels d’action analogique, samodélisation et son optimisation.Ces travaux théoriques ayant abouti à des résultats concrets, un ASIC a été conçu,fabriqué, testé et caractérisé au cours de cette thèse. Cet ASIC à huit canaux comporte doncdes amplificateurs et des détecteurs de potentiels d’action analogiques et constitue le principalapport de ce travail de thèse. / Bioelectronics is a transdisciplinary field which develops interconnection devicesbetween biological systems presenting electrical activity and the world of electronics. Thiscommunication with living tissues implies to observe the electrical activity of the cells andtherefore requires an electronic acquisition chain.The use of Multi / Micro Electrode Array leads to systems that acquire a large numberof parallel channels, thus consumption and congestion of acquisition circuits have asignificant impact on the viability of the system to be implanted.This thesis proposes two reflections about these acquisition circuits. One of thesereflections relates to amplifier circuits, their input impedance and consumption; the otherconcerns an analogue action potentials detector, its modeling and optimization.These theoretical work leading to concrete results, an ASIC was designed,manufactured, tested and characterized in this thesis. This eight-channel ASIC thereforeincludes amplifiers and analogue action potentials detector and is the main contribution of thisthesis.

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