The use of microsatellite markers has matured and become commonplace for plant genome analyses and is now poised for widespread practical application in sugarcane. Sequence Tagged Microsatellite Site (STMS) amplification is the most prevalent microsatellite-based approach and involves the amplification of a microsatellite by designing primers that flank and hence define the microsatellite site, revealing variation in the length of repeat motifs between individuals. Twenty-six microsatellite primer pairs received from the International Sugarcane Microsatellite Consortium (ISMC) were evaluated and the STMS protocol was optimised to ensure robust and reproducible results. The objectives of this study were to use STMS for sugarcane parentage analysis and fingerprinting. Previously, Restriction Fragment Length Polymorphism (RFLP) marker data had suggested that the parentage of a genetic mapping population, sugarcane cross AA40 (N18 x CP57/614), was incorrect. Based on the assertion that the incorrect parentage was as a result of either mislabelling at planting or at seed collection, microsatellite parentage analysis was carried out on eight potential parent pairs (13 cultivars). A total of 75 markers were scored with non-parental bands (12 on average) being observed for all of the potential parent pairs and none could be identified as the true AA40 parents. It has been suggested in other plant species that PCR artefacts could give rise to non-parental bands and to investigate this the marker data of single parent DNA reactions and pooled parent pair DNA reactions or 'synthetic offspring' were compared. The results suggested that either a certain percentage of non-parental bands, perhaps 10% (maximum value observed), should be tolerated in microsatellite parentage analysis or a marker should only be considered to be discriminating for parentage if it is absent in both the parents and the pooled parent pair amplifications. Fingerprinting of 20 cultivars using 14 microsatellite primer pairs was conducted to evaluate the potential of the STMS approach for sugarcane varietal identification. It was found that only two microsatellite primer pairs were required to discriminate between all 20 cultivars with a theoretical number of non-differentiated pairs of cultivars (XK) of only 0.03. This estimator was used to determine the approximate number of microsatellites necessary for large-scale sugarcane fingerprinting. / Thesis (M.Sc.)-University of Natal, Durban, 2002.

Sugarcane plants (cultivar NCo376) were studied to assess the effects of temperature and season (spring and autumn equinox) on the morphological and physiological response of stalk components. Plants were grown from single-eyed setts for ca. five months and then placed into three temperature controlled glasshouses (22/12°C (C), 27/17°C (W) and 32/22°C (H) day/night temperatures). The plants were sampled twice weekly over a one month period., and intemodes 4, 6 and 10 of the primary haulms of each plant sampled for growth and sugar analysis. During spring, the leaf emergence rates were 0.0303, 0.1095 and 0.1682 leaves d(-1) at temperatures C, W and H, respectively; and 0.0327, 0.0824 and 0.113 leaves d(-1) in autumn. The phyllochron intervals were 114°Cd in spring and 147°Cd in autumn. Highest green leaf blade area of the primary haulms was achieved at H (438.0 and 511.7 cm2 in spring and autumn, respectively). The stalk extension rates were 1.22, 1.02, 0.38 cm d(-1) (spring) and 1.35, 0.98, 0.45 cm d(-1) (autumn), respectively, in descending order of temperature. Total biomass and stalk biomass per plant were not affected by temperature, despite the differences in stem elongation. Internodes of plants at C were shorter but thicker and heavier than the comparable internodes of plants at W and H. In autumn, the mature internode sucrose concentrations were 35.5, 29.2 and 25.5% at C, W and H, respectively; corresponding to mean RS% of 5.7, 9.8 and 13.3%, and fibre % of 58.8, 61.1 and 61.3%, at the respective ascending order of temperature. Sucrose % in the mature internodes in spring were 27.8, 20.9 and 19.9% at C, W and H, respectively; corresponding to RS% of 5.9, 9.76 and 10.9% and fibre % of 66.3, 69.4 and 69.2% at the respective ascending order of temperature. Temperature effect on the concentration of the stalk components of the immature internodes was in general not significant. Sucrose partitioning coefficients in the mature internodes were 0.25, 0.21 and 0.20 in spring and 0.50, 0.32 and 0.21 in autumn (at C, W and H, respectively). Data that resulted from this study, which is isolated to temperature and cultivar NCo376 can be used in models of sugarcane that simulate leaf appearance and senescence, assimilate partitioning between leaf and stalk and assimilate partitioning between the stalk components namely sucrose, reducing sugars and fibre. / Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2005.

Polihidroxialcanoatos são polímeros biodegradáveis, sintetizados por bactérias a partir de fontes de carbono renováveis. Este trabalho se concentra na produção de P3HB a partir de xilose no contexto de uma usina padrão de álcool e açúcar que produz energia através de cogeração, utiliza resíduos agrícolas de cana-de-açúcar e passaria a produzir etanol de segunda geração a partir do bagaço. A produção de PHAs a partir de xilose, hoje descartada, poderá viabilizar a geração de etanol de segunda geração. Variou-se a produtividade (0,28 e 1,11 g/L.h), o preço (R$ 4,50 R$ 9,00), o custo do fermentador (três cenários entre US$ 475 - 3.013 mil) e a capacidade produtiva da planta (dez cenários de 1.000 a 35.000 mil t/ano). As visões de resultado oferecem a margem de contribuição, lucratividade líquida da operação, bem como o ponto de breakeven. Recomenda-se redirecionar parte dos esforços de pesquisa voltados a um aumento do teor de P3HB na célula para a melhoria da produtividade do processo, que é o fator-chave para que o processo se torne economicamente mais atrativo. / Polyihydroxyalkanoates are biodegradable polymers, synthetized by bacteria from renewable sources of carbon. This thesis focuses on production of P3HB from xylose in the context of a standard sugar and ethanol plant, cogenerates steam and electrical energy utilizing sugarcane bagasse and agricultural residues. PHAs production from xylose, discarded in most mills nowadays, may enable profitability of 2nd generation bioethanol. Productivity varied from 0,28 to 1,11 g/L.h, and PHB price ranged from R$ 4,50 to R$ 9,00 per kilo. Fermentor cost was studied in 3 scenarios from US$ 475 to 3.013 thousand and the production capacity was analyzed in ten different scenarios, from 1,000 to 35,000 thousand tonnes/year. Result reviews offer contribution margin, net operational profit, as well as breakeven point analysis. Recommended is to redirect part of the research efforts from improving P3HB yields to process productivity improvement, which turned out to be the key factor to economic feasibility.

Polihidroxialcanoatos são polímeros biodegradáveis, sintetizados por bactérias a partir de fontes de carbono renováveis. Este trabalho se concentra na produção de P3HB a partir de xilose no contexto de uma usina padrão de álcool e açúcar que produz energia através de cogeração, utiliza resíduos agrícolas de cana-de-açúcar e passaria a produzir etanol de segunda geração a partir do bagaço. A produção de PHAs a partir de xilose, hoje descartada, poderá viabilizar a geração de etanol de segunda geração. Variou-se a produtividade (0,28 e 1,11 g/L.h), o preço (R$ 4,50 R$ 9,00), o custo do fermentador (três cenários entre US$ 475 - 3.013 mil) e a capacidade produtiva da planta (dez cenários de 1.000 a 35.000 mil t/ano). As visões de resultado oferecem a margem de contribuição, lucratividade líquida da operação, bem como o ponto de breakeven. Recomenda-se redirecionar parte dos esforços de pesquisa voltados a um aumento do teor de P3HB na célula para a melhoria da produtividade do processo, que é o fator-chave para que o processo se torne economicamente mais atrativo. / Polyihydroxyalkanoates are biodegradable polymers, synthetized by bacteria from renewable sources of carbon. This thesis focuses on production of P3HB from xylose in the context of a standard sugar and ethanol plant, cogenerates steam and electrical energy utilizing sugarcane bagasse and agricultural residues. PHAs production from xylose, discarded in most mills nowadays, may enable profitability of 2nd generation bioethanol. Productivity varied from 0,28 to 1,11 g/L.h, and PHB price ranged from R$ 4,50 to R$ 9,00 per kilo. Fermentor cost was studied in 3 scenarios from US$ 475 to 3.013 thousand and the production capacity was analyzed in ten different scenarios, from 1,000 to 35,000 thousand tonnes/year. Result reviews offer contribution margin, net operational profit, as well as breakeven point analysis. Recommended is to redirect part of the research efforts from improving P3HB yields to process productivity improvement, which turned out to be the key factor to economic feasibility.