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Thesis (Ph.D.)--University of Adelaide, Depts. of Geology and Geophysics and Geographical & Environmental Studies, 2000? / Bibliography: leaves 223-266.

Thesis (M.Eng.)--University of Wollongong, 2004. / Typescript. Includes bibliographical references: leaf 206-219.

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The primary soil limitations to crop yield in the Senegalese "Peanut Basin" include salinity, acidity, and fertility. Crop yield may be increased by use of soil amendments and salt-tolerant cultivars. Objectives of this research were to evaluate salt tolerance of various millet (Pennisetum glaucum (L.) R.Br.) cultivars and compare effects of soil amendments on millet growth and yield in greenhouse and field studies. The research included two greenhouse experiments (i) comparing the salt tolerance of seven pearl millet cultivars (IBMV 8402, SOSAT C88, ICMV-IS 88102, IKMP1, IKMP2, IKMV 8201 and GAWANE) using five levels of electrical conductivity (0.3. 2.1, 4.2, 5.2 and 6.3 dS m-1) and (ii) assessing SOSAT C88 responses to various organic (compost and peanut shells) and inorganic (phosphogypsum; PG) amendments in manufactured saline soils (4.2 dSm-1); and (iii) a two-year (2014-2015) field experiment in Senegal evaluating the effects of local organic amendments (peanut shells and compost) on the responses of three millet cultivars (SOSAT C88, GAWANE and IBMV 8402) under low and high soil salinity. Cultivars SOSAT C88 and IBMV 8402 performed best in saline greenhouse media. The soil amendments that elicited the best millet plant responses in the greenhouse experiment were yard waste compost and peanut shells. Phosphogypsum exacerbated salinity effects by increasing electrical conductivity. In the field study, there were no differences among treatments. Cultivars IBMV 8402 and SOSAT C88 could be cultivated in saline soils amended with peanut shells. / Master of Science

This thesis describes the use of different DNA sequencing technologies to investigate the structure and function of microbial communities in two extreme environments, boreal acid sulfate soil and the terrestrial deep biosphere. The first of the two investigated environments was soils containing un-oxidized metal sulfides that are termed ‘potential acid sulfate soil’ (PASS) materials. If these materials are exposed to atmospheric oxygen by either natural phenomena (e.g., land uplift) or human activities (e.g., drainage) then the metal sulfides become oxidized and the PASS becomes acidic and is defined as an ‘acid sulfate soil’ (ASS). The resulting acid and metal release from metal sulfide oxidation can lead to severe environmental damage. Although acidophilic microorganisms capable of catalyzing acid and metal release have been identified from many sulfide mineral containing environments, the microbial community of boreal PASSs/ASSs remains unclear. This study investigated the physicochemical and microbial characteristics of PASSs and ASSs from the Risöfladan experimental field in Vasa, Finland. Sanger sequencing of 16S rRNA gene sequences of microorganisms present in the PASSs and ASSs were mostly assigned to acidophilic species and environmental clones previously identified from acid- and metal-contaminated environments. Enrichment cultures inoculated from the ASS demonstrated that the acidophilic microorganisms were responsible for catalyzing acid and metal release from PASSs/ASSs. Lastly, the study investigated how to mitigate metal sulfide oxidation and the concomitant formation of sulfuric acid by treating ASSs in situ with CaCO3 or Ca(OH)2 suspensions. The DNA sequencing still identified acidophilic microorganisms after the chemical treatments. However, the increased pH during and after treatment suggested that the activity of the acidophiles might be inhibited. This study was the first to identify the microbial community present in boreal PASSs/ASSs and suggested that treatment with basic compounds may inhibit microbial catalysis of metal sulfide dissolution. The second studied environment was the deep, dark terrestrial subsurface that is suggested to be both extremely stable and highly oligotrophic. Despite the scarcity of carbon and energy sources, the deep biosphere is estimated to constitute up to 20% of the total biomass on earth and thus, represents the largest microbial ecosystem. However, due to the difficulties of accessing this environment and our inability to cultivate the indigenous microbial populations, details of the diversity and metabolism of these communities remain largely unexplored. This study was carried out at Äspö Hard Rock Laboratory, Sweden and utilized second-generation sequencing to identify the taxonomic composition and genetic potential of planktonic and biofilm populations. Community DNA sequencing of planktonic cells from three water types at varied age and depth (‘modern marine’, ‘undefined mixed’, and ‘old saline’) showed the existence of ultra-small cells capable of passing through a 0.22 μm filter that were phylogenetically distinct communities from the >0.22 μm fraction. The reduced cell size and/or genome size suggested a potential adaptation to the oligotrophic environment in the terrestrial deep biosphere. The identified planktonic communities were dominated by Proteobacteria, Candidate divisions, unclassified archaea, and unclassified bacteria. Functional analysis of the assembled genomes showed that the planktonic population from the shallow modern marine water demonstrated a predominantly anaerobic and heterotrophic lifestyle. In contrast, the deeper, old saline water was more closely aligned with the hypothesis of a hydrogen-driven deep biosphere. Metagenomic analysis of subsurface biofilms from ‘modern marine’ and ‘old saline’ water types suggested only a subset of populations were involved in initial biofilm formation. The identified biofilm populations from both water types were distinct from the planktonic community and were suggested to be dominated by hydrogen fed, chemolithoautotrophic and diazotrophic populations.

Global environmental concerns arise when marine deposits with fine-grained iron sulfide-rich sediments (FeS and FeS2), now situated above sea level, oxidize from anthropogenic lowering of the groundwater table. The oxidation of iron sulfides decreases the soil pH and the acidic environment of these Acid Sulfate Soils (AS) soils increase weathering and mobilization of metals into adjacent watercourses, lakes and estuaries. Low pH and enhanced concentrations of metals are known to influence water quality negatively, causing fish kills and reduced aquatic diversity. Sulfide rich sediments were deposited in the Baltic Sea after the last glaciation and are now abundantly found along the coasts of for example the Bothnian Bay as a result of isostatic rebound. Recent studies from Finland have stated associations between leached (AS) soils and increased concentrations of metals in estuary sediments, thus the effects are likely to be similar in Sweden. With financial support from the Interreg Nord project “Ecological restoration in coastal river basins in the Bothnian Bay” in cooperation with the Geological Survey of Sweden (SGU), sediments from three lakes and two estuarine sites in the Rosån catchment in Norrbotten county, northern Sweden, were sampled and analyzed with fpXRF, ICP-MS and LOI methods. Elemental concentrations and organic contents were compared to establish accumulation trends over time and relationships between metal concentrations in recently deposited sediments and potential influence from previously sampled (AS) soils. Correlations in time, to anthropogenic activity, such as ditching were also considered. A primary allover trend with increasing concentrations of Aluminum (Al), Arsenic (As), Cadmium (Cd), Cobalt (Co), Cupper (Cu), Iron (Fe), Manganese (Mn), Nickel (Ni), Lead (Pb), Rare Earth Elements (REE) and Zinc (Zn), was noticed in a majority of the lake and estuary sediment samples. With some site variation, also two discrete peaks at different depth, were found in the upper 20 to 30 cm of the sampled sediments. Significant correlations to organic matter were also found for a considerable amount of the elements. Soil samples from (AS) soils in areas related to Rosån show pH values as low as 2.62 and oxidation depths down to 170 cm. Substantial elemental depletion in the oxidized zone suggest increased weathering, leaching and mobilization of Al, Cd, Co, Mn, Ni, REE, Zn and to some extent As, Cu, Fe and Pb from the soil, as a consequence of the acidic environment. A relationship between (AS) soils and increased metal concentrations is therefore likely. The sedimentation rate of roughly 0.2 cm/year was calculated from the separation age of the lakes and the sediment depth to an interpreted transition from more marine environment to lake settings. Consequently the distinct peaks of increased metal concentrations are thus suggested to be related to anthropogenic activities as for example improved drainage methods after the Second World War, but proper dating of the sediments is needed to establish any certain correlations. / På senare tid har man uppmärksammat de miljöproblem som uppstår när finkorniga sediment, innehållande järnsulfider, oxiderar på grund av mänsklig påverkan, t ex. dikning, eller annan typ av aktivitet som sänker grundvattennivån. När järnsulfiderna oxiderar bildas svavelsyra som gör att pH- värdet i marken blir väldigt lågt. Den sura miljön i dessa så kallade sura sulfatjordar, gör i sin tur att mineraler i marken vittrar fortare med påföljden att både surt vatten och ökade mängder metaller, sprids till närliggande vattendrag, sjöar och hav. Lågt pH och höga halter av metaller i vatten påverkar även vattenkvalitén negativt och har rapporterats orsaka fiskdöd och minskad akvatisk mångfald. Sura sulfatjordar är globalt förekommande och återfinns bland annat längs Bottenvikens kuster. De har kunnat bildas genom att sulfidhaltiga sediment, som avsattes i Östersjön efter den senaste istiden, nu befinner sig ovan havsnivån på grund av landhöjningen. I Finland har man i flera studier sett ett samband mellan sura sulfatjordar och ökade metallhalter i nyligen avsatta kustsediment och man kan anta att liknande förhållande gäller även i Sverige. Med finansiellt stöd från EU-projektet “Kustmynnande Vattendrag i Bottenviken-Metodutveckling och Ekologisk Restaurering” (Interreg Nord) genom Sveriges geologiska undersökning (SGU) och i samarbete med Länsstyrelsen i Norrbotten, har bottensediment från tre sjöar och två fjärdar i Rosåns avrinningsområde i Norrbotten provtagits och analyserats. För att fastställa hur koncentrationerna har förändrats över tiden har metallhalterna i de nyligen avsatta sedimenten jämförts med koncentrationerna i äldre sediment. Även jordprofiler från sura sulfatjordar i området har studerats för att kunna utvärdera ett ev. samband mellan urlakade ämnen i jordarna och ökade halter i sedimenten. Granskning av hur långt metallerna transporteras i systemet har gjorts, liksom försök att hitta kopplingar i tiden till mänsklig påverkan som t.ex. dikning. I de översta sedimenten kan man, förutom en generellt ökande trend av aluminium (Al), arsenik (As), kadmium (Cd), kobolt (Co), koppar (Cu), järn (Fe), mangan (Mn), nickel, (Ni) bly (Pb), sällsynta jordartsmetaller (REE) och zink (Zn), också se tydliga toppar med ökade halter av dessa ämnen på minst två specifika djup. De sura sulfatjordarna, som uppmätte pH-värden ner till 2,62, visade tecken på urlakning av Al, Cd, Co, Ni, Mn, REE, Zn och till viss del också As, Cu, Fe och Pb, varpå en trolig relation mellan sura sulfatjordar och ökade metallhalter i nyligen avsatta sediment kan fastställas. En uppskattning av ackumulationshastigheten, som gjordes utifrån när de provtagna sjöarna skiljdes från havet, och sedimentdjupet som visar övergången från hav till sjö, visar att de observerade topparna av ökade metallkoncentrationer i sedimenten skulle kunna vara förknippade med dikning i början av 1900-talet och efter andra världskriget. För en säker bestämning av sambandet till specifika händelser behövs dock en riktig datering.

Solos que contem sulfatos apresentam complicações no seu comportamento quando são tratados com estabilizadores à base de cálcio como a cal. Quando um solo que contem sulfatos reage com cal, formam-se minerais expansivos como a etringita e a taumasita que são responsáveis pela deterioração e falha de vários projetos de solos estabilizados. Tem-se bem demostrado sob ensaios de laboratório que a relação vazios/(agente cimentante) é um parâmetro adequado para a avaliação e previsão de comportamentos mecânicos, como a resistência à compressão simples de vários tipos de solos cimentados artificialmente. Este trabalho pretende encontrar se as previsões da relação vazios/cal na resistência à compressão simples são efetivas para dimensionar misturas de solos sulfatados estabilizados com cal construídas em campo. Para lograr esse objetivo executou-se um programa experimental de ensaios de laboratório em conjunto com a construção de trechos experimentais de solo-cal. Os ensaios de laboratório ajudaram comprender o comportamento de solos sulfatados estabilizados com cal, e demostraram que a relação vazios/cal controla a resistência à compressão simples desses solos estabilizados evidenciando uma relação coerente com os resultados das resistências de campo, encontrando-se que as resistências de campo e laboratório são controladas por essa relação e que podem ser previstas pela mesma Ensaios de Difração de Raios X (DRX) e Microscopia Eletrônica de Varredura (MEV) identificaram minerais expansivos (etringita) nas amostras estabilizadas com cal e cinza-cal. Finalmente em laboratório foram testadas algumas soluções recomendadas na literatura para melhorar a estabilização de solos sulfatados mediante um projeto experimental demostrando que a estabilização com cinza volante e cal melhoram consideravelmente a resistência, a durabilidade e a estabilidade volumétrica de solos sulfatados enquanto que a técnica do mellowing mostrou melhoras apenas na estabilidade volumétrica do material. / Sulfate rich soils present complications in their behavior when are treated with calcium-based stabilizers such as lime. When a soil containing sulfates reacts with lime, expansive minerals such as ettringite and thaumasite are formed which are responsible for the deterioration and failure of various stabilized soil projects. It has been well demonstrated under laboratory tests that the relationship porosity/cementing agent ratio is an appropriate parameter for the evaluation and prediction of mechanical behavior, such as the unconfined compression strength of various types of artificially cemented soils. This work intends to find out if the predictions of the relation porosity/lime in the unconfined compression strength are effective to design lime stabilized soils mixtures built in field. In order to achieve this objective an experimental program of laboratory tests was carried out together with experimental road sections of lime stabilized soils were built. The laboratory tests helped to understand the behavior of lime stabilized sulfate soils, and demonstrated that the void/lime ratio controls the unconfined compression strength of these stabilized soils and that exist a consistent relationship with the field unconfined compression strength results, finding that both, field and laboratory strengths are controlled and can be predicted by this ratio X-ray diffraction (XRD) and Scanning Electron Microscopy (SEM) tests were performed to identify expansive minerals (ettringite) on soils samples stabilized whit lime and fly ash-lime. Finally, some solutions recommended in the literature have been tested in laboratory to improve the stabilization of sulfate rich soils through an experimental design, showing that the fly ash-lime stabilization improve considerably the strength, durability and volumetric stability of the sulfate rich soils whereas that for the mellowing the improve was observed only on the volumetric stability of the material.

Many brackish water aquaculture ventures in Australia and overseas have established ponds in coastal regions with acid sulfate soils (ASS). Acid sulphate soils are known to leach relatively high concentrations of metals, acid (metal and H+ ion) and sulfur, however very little is known about how these leached elements affect the water quality of aquaculture ponds. The main objective of this thesis was to describe the hydrochemical processes controlling the water chemistry in the water column and sediment pore water in the studied aquaculture ponds over time and space. Water samples providing the spatio-temporal data were collected from the ponds with the use of adapted sampling methods commonly used in the groundwater environment. A transect of five nested piesometers was installed in two prawn ponds at Pimpama, south east Queensland, Australia. Each piesometer nest contained a multilevel with eight outtakes, a mini ?? horizontal, and a slotted piesometer. Water samples were collected from each nested piesometer on a bi-monthly basis over the prawn-growing season. The unstable elements and water quality variables (pH, Eh, DO, EC, water temperature) were measured in the field. Stable elements were analysed in the laboratory using ICP-OES and ICP-MS. Soil samples were collected at the end of the season for elemental analysis. A number of key sediment/water interactions and processes such as precipitation/dissolution reactions, oxidation-reduction reactions, photosynthesis, adsorption and seawater buffering were identified as important controls on pond water conditions. This is the first study to provide detailed hydrochemcial analysis of the pond water over time and space and aided in identifying that even shallow water bodies can be chemically heterogeneous. Analysis of the water and sediment highlighted the selection of metals that can be associated with ASS and that are mobilised from pond sediments under certain chemical conditions. In Pond 7 Al, As, Ni and Zn concentrations were generally higher at the beginning of the grow-out season. Variability of the metal concentration was observed between the water column (0 ?? 1500 mm) and the pore-water (0 - -1000 mm). The highest concentration of Al (1044 ??g/L) and Zn (104 ??g/L) were sampled in the water column (approximately 400 mm from the surface of the pond). The highest concentration of As (130 ??g/L) and Ni (73 ??g/L) were sampled in the pore water sediment (associated with ASS). Elevated Mn and Fe2+ concentrations were also associated with the sediment pore water. The highest concentrations of Mn and Fe2+ were 4717 ??g/L and 5100 ??g/L respectively. In Pond 10, Ni concentrations (167 ??g/L) were the highest at the beginning of the grow-out season. However, As (97 ??g/L), Al (234 ??g/L) and Zn (308 ??g/L) were most concentrated during the middle of the cycle. The highest mean concentrations of these elements are As (63 ??g/L), Al (91 ??g/L) and Zn (69 ??g/L) which are each associated with the sediment-water interface. These metals are integral in degrading the pond water quality and lead to a loss of beneficial algal blooms, a reduction in pond water pH, poor growth rates and high mortality in shrimp. It is also possible that the dissolved ions and precipitated compounds that are leached from the ASS are discharged into the adjacent coastal estuary of Moreton Bay. With knowledge obtained from this PhD study, effective management and treatment systems can be developed and implemented to minimise the impact of these soils on the pond system and the water discharging into natural coastal ecosystem.

Thesis (M.S.)--West Virginia University, 2006. / Title from document title page. Document formatted into pages; contains vi, 36 p. : ill. (some col.), col. maps. Includes abstract. Includes bibliographical references (p. 31-36).