<div>Bacteria which enter a viable but non-culturable state cannot be concentrated by enrichment. This means they may not reach a detectable concentration for PCR methods - especially in the presence of sample compounds which may act as PCR reaction inhibitors. An alternative strategy for concentration of bacteria from aqueous samples is explored in this work using tangential flow filtration. The effectiveness of this technology to concentrate pathogens from food-derived samples was previously demonstrated; however, losses of bacteria to the filtration system can still be high (i.e. recovery of bacteria is low). </div><div>The goal of this research was to maximize recovery of pathogenic microorganisms from hollow fiber filtration processes while also maximizing flux. In this way, high recovery filtration conditions could be selected while keeping filtration time low. It was hypothesized that flux would have relatively lower impact on final recovery of bacteria at high shear rates (27,000 1/s) which are sufficient to remove attached bacteria on surfaces. It was hypothesized that these high shear rates would not cause loss of bacterial viability, and the main cause of bacterial losses during filtration would be accumulation on the membrane surface.</div><div>To test these hypotheses, single fiber filter modules (both microfilters and ultrafilters with 0.5 mm inner diameter), were constructed and used to concentrate GFP-producing Escherichia coli at a wide range of flux conditions. Post-concentration, fluorescence micrographs of bisected hollow fibers illustrated patterns of bacterial accumulation along the length of the fiber. A simple recovery model was constructed to predict recovery as a function of flux and shear rate, and predictions were compared against the experimental data. </div><div>Both in the experiments and in the simple recovery model developed in this dissertation, recoveries near 90% were achievable at high shear rates when flux was ≤0.5 mL min-1 cm-2. This amounted to a 3-hour filtration time for a 225 mL sample. Compared to a filtration with only 30% recovery, detectable bacteria concentrations could be achieved with lower starting concentrations – ~5 CFU/mL starting concentration versus at least 15 CFU/mL. Given these high recoveries (determined with plating methods on agar) occurred at high pressure and shear conditions, it was determined the filtration did not affect bacterial viability. </div><div>In addition to using the model to predict recovery at various shear and flux conditions, it would be helpful to predict module designs or concentration strategies which could improve bacterial recoveries from the filter. One strategy, explored with preliminary data, was to pre-develop a layer of bacteria on the filter surface prior to concentrating samples. </div><div>Understanding and reducing the losses of bacteria during tangential flow filtration could enable detection of dilute levels of viable but non-culturable microorganisms; in addition, sensitivity of detection could be improved for quickly concentration culturable microorganisms in food and water samples.</div><div><br></div>

"Excessive discharge of heavy metals has been one of the major causes of water pollution worldwide. Various traditional methods of heavy metal removal have been devised but certain drawbacks like high cost, high energy requirement, and the production of toxic sludge have limited their use. Hence, biosorption is one of the alternative methodologies. This study combined biosorption and diafiltration in an attempt to optimize Polymer Enhanced Diafiltration to study copper removal from aqueous solutions by the use of a biopolymer, lambda-carrageenan. Lambda-carrageenan was studied as a biosorbent owing to properties such as low cost, good water solubility, non-gelling nature and the presence of sulfate groups which can sequester cations. Conditions for binding such as pH, temperature and concentration of copper and lambda-carrageenan were studied. Equilibrium dialysis experiments were performed to study the metal ion membrane transport kinetics and to determine the metal ion binding capacity and strength of the copper-biopolymer association. Rheological measurements were performed to determine how the viscosity of lambda-carrageenan changes with increase in shear stress and with increase in metal concentration. The solution was found to be shear thinning. However, with increase in metal concentration, viscosity was found to increase when high concentrations of polymer (8 g/L and 12 g/L) were used. Solution viscosity was found to decrease with increase in metal concentration when 4 g/L of polymer was used. Polymer Enhanced Diafiltration studies showed no leakage of the polymer through the membrane and no significant binding elsewhere in the PEDF system. It also showed an impressive retention of copper inspite of a rather high metal ion-polymer dissociation constant suggesting a yet not understood series of events occurring on the membrane of the PEDF system. Lambda-carrageenan is a linear polysaccharide, which might be stacking up on the membrane after forming layers, and not allowing any free metal ion to escape. Other reasons could be the sieving effect, degradation of the polymer due to shear and compaction of molecule on metal binding such that the polymer is not itself escaping through the membrane, but also not allowing the free metal ion to escape. Hence, this study suggests the need for more information on the metal-polymer interactions on the surface of the membrane by designing a direct observation experiment with a mini-tangential flow filtration system."

No description available.

The nematode Caenorhabditis elegans is a model organism for understanding sensory molecules of multicellular organisms. Ovulating hermaphrodites produce putative pheromone(s) that cause male attraction. Because pheromones are produced in such small quantities, adult conditioned-media from large-scale synchronous culture is necessary to analyze these pheromones. Current protocols for culture synchronization have volume constraints that limit large-scale synchronous cultures and current methodology for adult conditioned-media production is impractical. Modification of Tangential Flow Filtration (TFF) systems was investigated for use as a method to increase the volume limits of bleach egg harvest for C. elegans culture synchronization. Also, an adult retention device built within the culture vessel was investigated to optimize the environment for aseptic conditioned-media production from dense large-scale C. elegans cultures. During this investigation, we have shown that synchronous C. elegans cultures for adult conditioned-media production can be grown at scales larger than reported before, with potential for further scale up. Our growth methodologies have also yielded denser cultures than previously achieved at large scales. Since rapid bleach harvesting appears to be the bottleneck for large-scale production of synchronous C. elegans cultures, our approach of using modified TFF systems with mesh to retain C. elegans eggs increased the amount of eggs that could be bleach harvested at one time. Using this method we have been able to achieve up to 5x103 synchronous C. elegans per mL at a 50L scale. Since scale-up of TFF is straightforward, our results suggest that the technique reported here can easily be applied to larger scale systems for production of adult conditioned-media for C. elegans. Further, the adult retention device within the culture vessel can ensure that the whole process remains aseptic.

Downstream purification often represents the most cost-intensive step in the manufacturing of recombinant proteins. Conventional purification processes are lengthy, technically complicated, product specific and time-consuming. To address this issue, herein we develop a one step purification system that due to the nature of the non-selective secretion system and the versatility of ion-exchange membrane chromatography can be widely applied to the production of many recombinant proteins. This was achieved through the integration of the intrinsically coupled upstream, midstream and downstream processes, a connection that is rarely exploited. A bioprocess for effective production and purification of penicillin G acylase (PAC) was developed. PAC was overexpressed in a genetically engineered Escherichia coli strain, secreted into the cultivation medium, harvested, and purified in a single step by anion-exchange chromatography. The cultivation medium developed had a sufficiently low conductivity to allow direct application of the extracellular fraction to the anion-exchange chromatography medium while providing all of the required nutrients for sustaining cell growth and PAC overexpression. It was contrived with the purposes of (i) providing sufficient osmolarity and buffering capacity, (ii) minimizing ionic species to facilitate the binding of extracellular proteins to anion-exchange medium, and (iii) enhancing PAC expression level and secretion efficiency. Employing this medium recipe the specific PAC activity reached a high level of 487 U/L/OD600, with more than 90% was localized in the extracellular medium. Both, the osmotic pressure and induction conditions were found to be critical for optimal culture performance. Furthermore, formation of inclusion bodies associated with PAC overexpression tended to arrest cell growth, leading to potential cell lysis. iv At harvest, the whole non-clarified culture broth was applied directly to a tangential flow filtration anion-exchange membrane chromatography system. One-step purification of recombinant PAC was achieved based on the dual nature of membrane chromatography (i.e. microfiltration-sized pores and anion-exchange chemistry). Due to their size, cells remained in the retentate while the extracellular medium penetrated the membrane. Most contaminate proteins were captured by the anion-exchange membrane, whereas the purified PAC was collected in the filtrate. The batch time for both cultivation and purification was less than 24 h and recombinant PAC with high purity (19 U/mg), process yield (74%), and productivity (41 mg/L) was obtained.

Polymeric nanoparticles are potential candidates as carriers for pharmaceutical agents. Development of such nanoparticles generally requires molecules immobilized on the particle surfaces to ensure biocompatibility and/or targeting abilities. Following particle preparation and surface modification, excess reagents must be removed. Ultracentrifugation, which is the most widely used purification technique as per today, is not feasible in industrial applications. In this diploma work, tangential flow filtration is studied as an alternative purification method which is better suited for implementation in a large-scale process. Comparison of ultracentrifugation and tangential flow filtration in diafiltration mode for purification of nanoparticles, indicate that they are comparable with respect to particle stability and the removal of the surfactant SDS from methacrylic anhydride nanoparticles. The purification efficiency of tangential flow filtration is superior to that of ultracentrifugation. Conductivity measurements of filtrates and supernatant liquids show that a stable conductivity value can be reached 6 times faster in filtration than in centrifugation with equipment and settings used. This conductivity arises from several types of molecules, and the contribution from surfactant molecules alone is not known. However, protein adsorption on the particles indicates successful removal of surfactant. Conductivity and tensiometry were evaluated as potential methods to quantify surfactant in solutions, but both proved unsatisfactory. Using bovine serum albumin as a model protein, the extent of immobilization to nanoparticles is evaluated at different pH. A maximum amount of 6,8 mg/m2 is immobilized, whereof an unknown part is covalently bound. This coverage is achieved at pH 4,0 and is probably partly due to low electrostatic repulsion between particle and protein. An estimation of 2,0 µmol covalently bound BSA per gram of nanoparticles corresponds to 5,3 mg/m2 and a surface coverage of 76%. Removal of excess reagents after surface modification is done with ultracentrifugation instead of filtration, as particle aggregates present after the immobilization reaction might foul the membrane.

<p>Polymeric nanoparticles are potential candidates as carriers for pharmaceutical agents. Development of such nanoparticles generally requires molecules immobilized on the particle surfaces to ensure biocompatibility and/or targeting abilities. Following particle preparation and surface modification, excess reagents must be removed. Ultracentrifugation, which is the most widely used purification technique as per today, is not feasible in industrial applications. In this diploma work, tangential flow filtration is studied as an alternative purification method which is better suited for implementation in a large-scale process.</p><p>Comparison of ultracentrifugation and tangential flow filtration in diafiltration mode for purification of nanoparticles, indicate that they are comparable with respect to particle stability and the removal of the surfactant SDS from methacrylic anhydride nanoparticles. The purification efficiency of tangential flow filtration is superior to that of ultracentrifugation. Conductivity measurements of filtrates and supernatant liquids show that a stable conductivity value can be reached 6 times faster in filtration than in centrifugation with equipment and settings used. This conductivity arises from several types of molecules, and the contribution from surfactant molecules alone is not known. However, protein adsorption on the particles indicates successful removal of surfactant. Conductivity and tensiometry were evaluated as potential methods to quantify surfactant in solutions, but both proved unsatisfactory.</p><p>Using bovine serum albumin as a model protein, the extent of immobilization to nanoparticles is evaluated at different pH. A maximum amount of 6,8 mg/m2 is immobilized, whereof an unknown part is covalently bound. This coverage is achieved at pH 4,0 and is probably partly due to low electrostatic repulsion between particle and protein. An estimation of 2,0 µmol covalently bound BSA per gram of nanoparticles corresponds to 5,3 mg/m2 and a surface coverage of 76%. Removal of excess reagents after surface modification is done with ultracentrifugation instead of filtration, as particle aggregates present after the immobilization reaction might foul the membrane.</p>

Downstream purification often represents the most cost-intensive step in the manufacturing of recombinant proteins. Conventional purification processes are lengthy, technically complicated, product specific and time-consuming. To address this issue, herein we develop a one step purification system that due to the nature of the non-selective secretion system and the versatility of ion-exchange membrane chromatography can be widely applied to the production of many recombinant proteins. This was achieved through the integration of the intrinsically coupled upstream, midstream and downstream processes, a connection that is rarely exploited. A bioprocess for effective production and purification of penicillin G acylase (PAC) was developed. PAC was overexpressed in a genetically engineered Escherichia coli strain, secreted into the cultivation medium, harvested, and purified in a single step by anion-exchange chromatography. The cultivation medium developed had a sufficiently low conductivity to allow direct application of the extracellular fraction to the anion-exchange chromatography medium while providing all of the required nutrients for sustaining cell growth and PAC overexpression. It was contrived with the purposes of (i) providing sufficient osmolarity and buffering capacity, (ii) minimizing ionic species to facilitate the binding of extracellular proteins to anion-exchange medium, and (iii) enhancing PAC expression level and secretion efficiency. Employing this medium recipe the specific PAC activity reached a high level of 487 U/L/OD600, with more than 90% was localized in the extracellular medium. Both, the osmotic pressure and induction conditions were found to be critical for optimal culture performance. Furthermore, formation of inclusion bodies associated with PAC overexpression tended to arrest cell growth, leading to potential cell lysis. iv At harvest, the whole non-clarified culture broth was applied directly to a tangential flow filtration anion-exchange membrane chromatography system. One-step purification of recombinant PAC was achieved based on the dual nature of membrane chromatography (i.e. microfiltration-sized pores and anion-exchange chemistry). Due to their size, cells remained in the retentate while the extracellular medium penetrated the membrane. Most contaminate proteins were captured by the anion-exchange membrane, whereas the purified PAC was collected in the filtrate. The batch time for both cultivation and purification was less than 24 h and recombinant PAC with high purity (19 U/mg), process yield (74%), and productivity (41 mg/L) was obtained.

No description available.

To diagnose patients suffering from blood clotting disorders latex immununoassays (LIA) can be used. A time consuming manual tangential flow filtration (TFF) process suggests the implementation of an automatic TFF system to improve the efficiency, profitability, and expandability of the production facility of LIA at Nordic Biomarker. Tests were made of the automatic TFF system's ability to perform the desired steps of concentration, dilution and diafiltration, both with purified water and mimicked product. The mimicked product of micro particles (MP) mixed with monoclonal antibodies (mAb) was also used to further test the system's pressure control, safety alarms and stops, and to determine a permeate flux by a critical flux experiment. The results imply a functional TFF system able to automatically concentrate the process fluid and maintain a stable volume during diafiltration, although an additional permeate pump was ordered to be able to attain a fully functional performance of the automatic TFF process. The final part of the implementation was to initiate a validation draft including a risk assessment, OQ plan and PQ plan that resulted in a plan of the main tests to be performed. To conclude, the essential part of the implementation of a high quality and efficient automatic TFF process was conducted to facilitate future expansion of the production of LIA.