With its unique consortium of microorganisms from all domains of life, termite gut is considered one of the most efficient lignocellulose degrading systems in nature. Recently, host diet and taxonomy as well as gut microenvironmental conditions have emerged as main factors shaping microbial communities in termite guts. The aim of this thesis was to investigate this highly efficient lignocellulolytic system at holobiont level, with a particular focus on gut microbiome function and composition in relation to the host diet. As a starting point, we optimised a complete framework for an accurate termite gut prokaryote-oriented metatranscriptomics, which was at the basis of all subsequent sequencing assay designs and analyses performed in the course of the work. Afterwards, we characterised the compositions and functions of biomass-degrading bacterial communities in guts of plant fibre- and soil-feeding higher termites, proving the existence of functional equivalence across microbial populations from different termite hosts. We also showed that each termite is a reservoir of unique microorganisms and their accompanying genes. We further extended above approach to metagenomics and bacterial genomes reconstruction and we applied it to explore the process of biomass digestion in the different sections of the highly compartmented gut of soil feeding Labiotermes labralis. We showed that primarily cellulolytic activity of the termite host was restricted to foregut and midgut, while bacterial contribution was most pronounced in P1 and P3 hindgut compartments and included activities targeting broad range of lignocellulose components. Finally, we investigated the adaptation of a laboratory-maintained grass-feeding higher termite colony of Cortaritermes spp. to Miscanthus diet at host and symbiont levels. A natural system of a termite gut was shown to progressively change in composition to yield a consortium of microbes specialised in degradation of a specific biomass. Overall, the integrative omics approach proposed here provide a framework for a better understanding of a complex lignocellulose degradation by a higher termite gut system and pave a road towards its future bioprospecting. / Doctorat en Sciences / info:eu-repo/semantics/nonPublished

This thesis reports on the number of individuals in Macrotermes natalensis (Hav.) colonies, their biomass and food consumption in the northern Kruger National Park (KNP). The ecology of M. natalensis is largely undocumented despite the abundance of colonies in southern African savannas. New approaches to mound excavation, sub-sampling and data management are introduced. Via the intracolonial demography of colonies the contribution of each caste in number or proportion is determined. Using this information in combination with body mass and mound density data, biomass per unit area has been computed indicating the importance of this termite in synecology. The measurement of food consumption gives further insight as to how much litter is removed, fragmented and redistributed as nutrients in the ecosystem. Mounds were completely excavated, termites collected by means of vacuuming, and colony size estimated by sub-sampling. It was estimated that, on average, small mounds contain more than 5 000, medium mounds more than 45 000, and large mounds more than 200 000 individual termites. A highly significant relationship between total number of individuals (N ) and mound height (h ) was found, given by lnN = 7.893 + 1.093h (r = 0.92). The proportion of soldiers was found to change as colonies grew larger. In order to derive biomass estimates, a statistical bootstrap procedure was carried out using three databases: body mass, colony population sizes and mound density. Live biomass for small, medium and large mounds was found to be 0.17, 1.40 and 4.16 kg. Dry/wet body mass ratios were established for workers (23.7 %), major soldiers (20.3 %), minor soldiers (35.3 %), nymphs (17.1 %), king (35.4 %) and queen (20.8 %). Average live and dry biomass was calculated to be 0.51 kg/ha (0.051 g/m2) and 0.11 kg/ha (0.011 g/m2). Geology, geomorphology, elevation, local relief, soil patterns and annual rainfall were the abiotic factors shown to be most influential in determining termite biomass, either directly or indirectly. Termite biomass is high in undulating areas where the elevation is 250-400 m, where granitic and rhyolitic soils occur, and where annual rainfall is high (650-700 mm) in the context of the region. Major workers fetch woody litter outside the nest through ingestion into the section of the crop and gizzard. Gut contents were dried, weighed, ashed and reweighed. The ash mainly represents soil particles. The ash-free mass of food that is consumed during a single foraging trip by a foraging individual is 0.166 ± 0.009 mg (CI). Frequency of foraging trips between the mound and food source was observed using translucent tubing. The annual food consumption is given by the formula 365mnp/t , where m = individual mass of ashed crop-gizzard contents, n = number of foraging major workers, p = daily foraging period, and t = individual time spent between nest and food source. Food consumption of this termite in the northern KNP is calculated to be 20.2 kg/ha/yr. It is shown that termites are primary decomposers and contribute to litter fragmentation and the recycling of nutrients into the soil. This thesis gives greater insight into aspects such as colony development, biomass investment and resource utilization of M. natalensis in the northern KNP. / Dissertation (PhD)--University of Pretoria, 2003. / Zoology and Entomology / unrestricted