Taking an ecosystem approach to fisheries requires the consideration of relevant ecological processes within research and assessment frameworks. Processes affecting ecosystem productivity can be categorized as biophysical (climate variability, primary production), exploitative (fishing), or trophodynamic (food web interactions). This dissertation incorporates these three governing processes to characterize spatiotemporal diversity and population abundance trends for multiple demersal fish and invertebrate species that inhabit the nearshore zone (15-30 ft. depth) along portions of the U.S. Atlantic east coast. Two large marine ecosystems (LMEs) encompass the U.S. East coast – the Southeast and Northeast U.S. Continental Shelf LMEs. The level of connectivity within and between these two ecosystems is well understood for some individual species, but not generally for the nearshore assemblage. The first research chapter of this dissertation is a spatial diversity analysis of 141 fish and invertebrate species that inhabit nearshore waters from Florida to New York. Latitudinal diversity patterns revealed multiple biotic ecotones, or areas of high species turnover. An ecotone was evident in northern spring near the Cape Hatteras border of the two LMEs, but this barrier dissipated as water temperatures homogenized and assemblage connectivity between ecosystems increased throughout the year. Multiple other biotic ecotones were evident within the Southeast U.S. LME and were explained by seasonality and the proximity and area of adjacent estuarine habitat. The second and third research chapters of this dissertation focus on explaining temporal abundance trends for multiple nearshore fish and invertebrate species within the Southeast U.S. LME. For the second research chapter, abundance trends for 71 species were analyzed during 1990-2013 within a univariate time series modeling framework with the goal of determining the relative importance of climate variability and fishing pressure as governing influences on abundance. A decrease in bycatch mortality explained changes for multiple species, while climate variability governed the dynamics for others. Multivariate ordination revealed similar trends for groups of taxonomically related species, indicating governing processes act on species with similar life histories. An extension of results from the second research chapter, research chapter three explores trophic interactions between the bonnethead shark (Sphyrna tiburo) and five of its prey species within Southeast U.S. LME nearshore waters. Multivariate time series modeling supports a negative effect of bycatch on bonnetheads, and population-level predation effects of larger sharks on multiple prey species. Abundance trends for most prey species were also explained by environmental variability associated with the Pacific Decadal Oscillation, although trophic effects were stronger. This body of work incorporates relevant ecological factors in characterizing diversity and abundance trends for fish and invertebrate species comprising the nearshore demersal assemblage within Southeast and Northeast U.S. LMEs. Results indicate seasonal connectivity between LMEs that require further exploration at multiple spatial scales. Abundance time series modeling for multiple species in the Southeast U.S. LME reveals that fishing and trophodynamics may be relatively more influential drivers than climate variability in this sub-tropical system.

The 3rd generation partnership program (3GPP) has in recent years started working on integratingnon-terrestrial networks (NTN) into the 5G eco-system. This thesis focuses on the mobility between NTN and TN, which is of great importance if 5G NTN is to provide seamless and limitless connectivity. The target of this thesis is to understand and improve the mobility performance ofnon-terrestrial and terrestrial networks in a heterogeneous scenario. We first analyze data from system-level simulations of rural deployment scenarios when altering the parameters of the A3 measurement event and and then we further evaluate the use of a new NTN-specific distance-based measurement event, the D1 measurement event. We also evaluate the impact of needing toperform GNSS measurements when performing handovers from a terrestrial to a non-terrestrialnetwork. The results show that acquiring GNSS data during the handover procedure significantly increases handover delay time but does not heavily impact overall network performance. Additionally, the results show that by changing the parameters of the A3 measurement event and using the D1measurement event, ping-pong events between NTN-TN and unnecessary handovers to NTN canbe significantly reduced and improve the overall network performance.

Microorganisms are key players in the ecosystem functioning. In this thesis, we developed a framework to preprocess raw microbiome data, build a correlation network, and analyze co-occurrence patterns between microbes. We then applied this framework to a marine microbiome dataset. The dataset used in this study comes from a year-long time-series to characterize the microbial communities in our coastal waters off the Cal Poly Pier. In analyzing this dataset, we were able to observe and confirm previously discovered patterns of interactions and generate hypotheses about new patterns. The analysis of co-occurrences between prokaryotic and eukaryotic taxa is relatively novel and can provide new insight into how marine microbial communites are structured and interact.

Throughout the world, birds represent the primary type of wildlife that people experience on a daily basis. However, a growing body of evidence suggests that alterations to the acoustic environment can negatively affect birds as well as humans in a variety of ways, and altered acoustics from noise pollution has the potential to influence human interactions with wild birds. In this thesis, I investigated how anthropogenic noise impacts daily behavior as well as community structure of wild birds. In the first component of this thesis, I assessed the distance at which a bird initiates flight or escape behavior (i.e., flight initiation distance or FID) in varying acoustic conditions. I surveyed 12 songbird species from three foraging guilds, ground foragers, canopy gleaners, and hawking flycatchers, and I predicted FIDs to decrease, remain the same, and increase with noise exposure, respectively. Contrary to expectations, the canopy gleaning and flycatching guilds exhibited mixed responses, with some species exhibiting unchanged FIDs with noise while others exhibited increased FIDs with noise. However, FIDs of all ground foraging species and one canopy gleaner decreased with noise levels. In the second component, I examined the feeding of wild birds, an increasingly popular recreational activity throughout North America that promotes increased sense of wellbeing by connecting people with wildlife and nature. I tested how experimental noise influences abundance, species richness, community structure and foraging behavior of songbirds at maintained bird feeders. By measuring activity levels of all species that utilized the feeders exposed to intervals of quiet and noisy conditions, I found noise to be a significant predictor of community turnover. Specifically, noise exposure resulted in increased feeder activity for two species, and decreased activity for one species. I also confirmed previous research conducted in the laboratory indicating white-crowned sparrows decrease their foraging rate under noise conditions, presumably as a trade off with visual vigilance. Considering the interactions of humans and wild birds, the results from my two thesis components indicate that the acoustic environment can play a role in how species of different foraging guilds respond to birdwatchers and what species visit bird feeders.

The arroyo toad (Anaxyrus californicus) is a federally endangered species found on Fort Hunter Liggett, Monterey County, California. The species was discovered in 1996 and was determined to occupy 26.7 km of the San Antonio River from approximately 2.4 km northwest of the San Antonio Mission de Padua, to the river delta above the San Antonio Reservoir. The construction of the San Antonio Reservoir dam in 1963 isolated this northern population of arroyo toads. Through time, the Fort Hunter Liggett landscape has changed drastically. The land was heavily grazed by cattle until 1991, which considerably reduced vegetation in riparian areas. Military training following acquisition of the land in 1940 far exceeded current allowable training. Fire was used extensively to reduce unfavorable vegetation, and as a result, extreme tree loss occurred through the ranges. Today cattle grazing is prohibited and military activity is restricted from riparian corridors. While riparian vegetation continues to recover in the San Antonio River, habitat for breeding arroyo toads has become less suitable. To improve conservation efforts and management of this endangered species, I have provided a thorough assessment of the life history of arroyo toads specific to Fort Hunter Liggett and identified the status and current threats to the population on the installation. I have also prepared a habitat assessment of the San Antonio River in the arroyo toad range, quantified habitat conversion, and identified areas that may no longer provide suitable breeding habitat for the species. The research conducted for this report is preliminary to restoration efforts that are inevitable to ensure recovery of the endangered species at Fort Hunter Liggett.

Despite air travel has not grown as predicted, air travel is still expected to rise to just less than doubling the current figure by 2030. This creates an urging need to develop more efficient Air Traffic Management (ATM) solutions. Around the globe, research and development initiatives have been launched to modernize the air traffic control infrastructures. These modernized infrastructures will be built around continuous information gathering, sharing and transferring of data between aircraft and air navigation service providers and airports ground infrastructure, which will be difficult for current aeronautical communications systems to handle. As a result, new communication infrastructures are required to manage future aeronautical communication traffic demand. This paper proposes an integrated aeronautical communication architecture consisting of four radio access technologies for communications between aircrafts and ground Aeronautical Telecommunication Network (ATN). The design and implementation of a Joint Radio Resource Management (JRRM) framework to manage these radio resources are discussed. The design is verified by a proof-of-concept JRRM prototype which is developed for the management of radio resource between the Inmarsat Broadband Global Area Network (BGAN) and the Aeronautical Mobile Airport Communication System (AeroMACS).

Cephalopods provide forage to a wide range of predators in marine food-webs. Despite their ecological importance, a basic understanding of the mechanisms controlling predation risk and demand is lacking. This is true of one of the most common species of squid found in the northwest Atlantic, the longfin inshore squid (Loligo pealeii). In this dissertation, I address this shortcoming by investigating the role that size and behavior play in influencing squid’s vulnerability to predation. I used long-term food habits, population survey, and commercial landings data, to quantify size-based patterns of predation respective to 25 species of predators. Additionally, I estimated the amount of overlap between predatory consumption and the fishery catch for squid by size. I found that finfish and elasmobranchs generally consumed juvenile and sub-adult squid, while marine mammals primarily targeted adults. Consequently, marine mammals had the highest overlap with the fishing industry for squid size resources. Although large squid were not common in predator diets, predators did not appear to be gape-limited when feeding on squid. This suggested that other factors, including behavior, were important in shaping size-based patterns of predation. I used a laboratory-based approach to quantify attack and capture behaviors towards squid by two predators representing contrasting foraging tactics. Bluefish (Pomatomus saltatrix) and summer flounder (Paralichthys dentatus) were chosen as cruising and ambush predators, respectively. Patterns in attack rates suggested that sizeselection on squid was constrained by passive processes rather than active choice in both predators. Size-dependent profitability functions were calculated by combining capture success rates, handling times, and relative prey mass, and determined that bluefish was the more efficient predator of squid. Lastly, I evaluated the occurrence and effectiveness of anti-predator responses used by squid in the presence of bluefish and flounder. Squid behavior depended on the type of predator present, and the survival value of primary and secondary defense behaviors differed during interactions with each predator. The results of this project are intended to improve the quality of management of squid and their predators by providing a better understanding of predator-prey interactions in the northwest Atlantic.

A comparative study of the field populations of Crepidula lingulata, Crepidula nurnmaria, and Calyptraea fastigiata indicated all three preferred a rocky substrate but favored different size rocks. Their positions on the rocks varied but the greatest numbers were found attached to the undersides. Crepidula lingulata and C. nummaria preferred larger rocks and were found in intraspecific associations more often than C. fastigiata which preferred smaller rocks. These associations occurred with a 1:1 sex ratio; however, the overall population did not. Crepidula lingulata had a high female count and C. fastigiata a high male count. Males, of all three species, were smaller in size than females. Leptasterias hexactis and Evasterias troschellii were found to be possible predators. Protection was afforded those attached to the undersides of rocks. All three species used the radula to remove irritants from under the shell including the tube feet of attacking sea stars.

Three heteromyid rodent species were studied in relation to a large dry wash in Millard County, Utah, during the summer, 1974. Data were gathered with three trapping grids and analyzed to determine if the dry wash influenced rodent movement and distribution patterns. Dipodomys ordii and Dipodomys microps were distributed non-randomly in the dry wash and adjacent habitat, but Perognathus Zongimembris seemed to be randomly distributed. Dipodomys ordii was significantly correlated with wash habitat, but D. microps was found most frequently in upland areas. Soil and vegetative differences and competition were possible causes for the observed distribution. The wash was observed as a source of dispersing young D. ordii. It was concluded that the dry wash had little effect on daily movement of the rodents observed.

Plastic never fully disappears, but instead breaks into smaller pieces referred to as microplastics (< 5 mm length). Microplastics are common worldwide, and more studies are needed to understand the accumulation and diversity of microplastics found in various environments. In this study, six locations were sampled for one year in the Guana River Estuary, a partially impounded system with heavily urbanized headwaters. This study was conducted in conjunction with the Guana Tolomato Matanzas National Estuarine Research Reserve (GTM NERR) and the Florida Fish and Wildlife Conservation Commission (FWC) at their water sampling stations. The objectives of this study were to investigate: 1) distribution patterns across sample sites over time, 2) the color, size, and shape of microplastics found, and 3) polymer composition. Water samples were collected from surface waters in 1-L bottles, with five replicates at each site. Sampling occurred once a month, at the beginning of each month from August 2020-August 2021. Samples were analyzed for abundance and characteristics of microplastics using a dissecting microscope and the polymer composition was determined using Fourier-transform infrared spectroscopy. No pattern was found in the distribution of microplastics from north to south or over time. Variations in plastic color, size, and polymer composition suggests that there are multiple sources of pollution into the Guana River Estuary.