Thesis (M.S.)--University of Alabama at Birmingham, 2008. / Description based on contents viewed Feb. 10, 2009; title from PDF t.p. Includes bibliographical references (p. 33).

Thesis (doctoral)--University of Oulu, 2004. / Includes bibliographical references (p. 147-171). Also available on the World Wide Web.

Thesis (M. Phil.)--University of Hong Kong, 1998. / Includes bibliographical references.

Hyperspectral imaging is the collection, processing and analysis of spectral data in numerous contiguous wavelength bands while also providing spatial context. Some of the commonly used instruments for hyperspectral imaging are pushbroom scanning imaging systems, grating based imaging spectrometers and more recently electronically tunable filters. Electronically tunable filters offer the advantages of compactness and absence of mechanically movable parts. Electronically tunable filters have the ability to rapidly switch between wavelengths and provide spatial and spectral information over a large wavelength range. They involve the use of materials whose response to light can be altered in the presence of an external stimulus. While these filters offer some unique advantages, they also present some equally unique challenges. This research work involves the design and development of a multichannel imaging system using electronically tunable Liquid Crystal Fabry-Perot etalons. This instrument is called the Liquid Crystal Hyperspectral Imager (LiCHI). LiCHI images four spectral regions simultaneously and presents a trade-off between spatial and spectral domains. This simultaneity of measurements in multiple wavelengths can be exploited for dynamic and ephemeral events. LiCHI was initially designed for multispectral imaging of space plasmas but its versatility was demonstrated by testing in the field for multiple applications including landscape analysis and anomaly detection. The results obtained after testing of this instrument and analysis of the images are promising and demonstrate LiCHI as a good candidate for hyperspectral imaging. The challenges posed by LiCHI for each of these applications have also been explored.

In recent years there has been an increased drive towards point of care testing (POCT), in which assays are performed at the site of the patient. This has many benefits, critically; the time for a result to be obtained will be significantly reduced, allowing for greater and more effective decision making. Many currently used bioassay methods are not affordable in resource poor areas where infectious disease is most prevalent, in order to combat this issue many research groups are attempting to miniaturise equipment for portability and make assays more affordable and therefore more accessible. With the aims of generating a new assay platform which is highly portable and affordable, the work in this thesis presents the development of several generic methods utilising nano- and micro-scale beads coated with aptamer which are then monitored interacting with target proteins with Tunable Resistive Pulse Sensing (TRPS). Aptamers are short oligonucleotide sequences which are capable of binding to a wide range of targets with high selectivity and comparable affinity to antibodies while possessing greater stability and have begun to challenge the role of antibodies. When aptamers bind a target, they often undergo a conformational change. In the assays described herein, this conformational change is key to the observed signal changes. TRPS is a pore-based system in which beads moving through a pore cause a measurable increase in resistance which can be used to derive particle size, concentration, and mobility. During the course of this thesis several template TRPS aptasensors have been developed. TRPS was successfully used to confirm the successful coating of nano- and micro-scale beads with DNA aptamers by monitoring an increase in electrophoretic mobility when the negatively charged DNA is added to the surface. Following on from this, TRPS was used to monitor the interaction of aptamer tagged beads with thrombin protein enabling thrombin detection down to 1.4 nM and the comparison of several thrombin-aptamers with results comparable to previously published SPR data. Thrombin was postulated to shield the negative DNA, resulting in a decrease in mobility, and the magnitude of this charge shielding was found to depend upon the binding mechanism of the aptamer used. This effect is not thought to be specific to our system nor to thrombin, the principles outlined here may be applied to other RPS technologies, or by interchanging of the aptamer, different proteins. In later chapters, this method is expanded to include multiplexed detection of growth factors and a significant improvement in signal. vi Following on from this, the controlled aggregation of avidin coated beads in the presence of biotinylated-BSA was explored. Factors impacting upon this assay were discussed including magnetic separation, particle size and particle concentration, and different methods of data interpretation were presented. This aggregation study identified several key parameters in the use of TRPS in aggregation assays. Using the methods outlined by the study of aggregates, a dispersion assay was then designed in which the interaction of thrombin proteins with clusters of particles brought about the release of many small particles by the disruption of double stranded DNA linkages. This dispersion assay incorporated magnetic separation to simplify the read-out and relied on measuring particle concentration rather than mobility, enabling the use of additional pressure to increase speed and ease of use. Using this method, thrombin was able to be detected down to 100 fM, a significant advancement in TRPS aptasensors.

The emergence of optical applications, such as lasers, fiber optics, and semiconductor based sources and detectors, has created a drive for smaller and more specialized devices. Nanophotonics is an emerging field of study that encompasses the disciplines of physics, engineering, chemistry, biology, applied sciences and biomedical technology. In particular, nanophotonics explores optical processes on a nanoscale. This dissertation presents nanophotonic applications that incorporate various forms of the organic polymer N-isopropylacrylamide (NIPA) with inorganic semiconductors. This includes the material characterization of NIPA, with such techniques as ellipsometry and dynamic light scattering. Two devices were constructed incorporating the NIPA hydrogel with semiconductors. The first device comprises a PNIPAM-CdTe hybrid material. The PNIPAM is a means for the control of distances between CdTe quantum dots encapsulated within the hydrogel. Controlling the distance between the quantum dots allows for the control of resonant energy transfer between neighboring quantum dots. Whereby, providing a means for controlling the temperature dependent red-shifts in photoluminescent peaks and FWHM. Further, enhancement of photoluminescent due to increased scattering in the medium is shown as a function of temperature. The second device incorporates NIPA into a 2D photonic crystal patterned on GaAs. The refractive index change of the NIPA hydrogel as it undergoes its phase change creates a controllable mechanism for adjusting the transmittance of light frequencies through a linear defect in a photonic crystal. The NIPA infiltrated photonic crystal shows greater shifts in the bandwidth per ºC than any liquid crystal methods. This dissertation demonstrates the versatile uses of hydrogel, as a means of control in nanophotonic devices, and will likely lead to development of other hybrid applications. The development of smaller light based applications will facilitate the need to augment the devices with control mechanism and will play an increasing important role in the future.

This master thesis is focused on designing a concept of a biodynamic tunable white luminaire for the interior capable of producing user defined output or simulating the conditions of natural exterior lighting. The thesis describes the physiological basis of human sensitivity to lighting and the consequences, as well as the principles of semiconductor radiation sources. Finally, it deals with methods of sensing the lighting conditions and describing the design and functions of the system elements and final implementation.

Typical microwave components such as antennas are large in size and occupy considerable space. Since multiple standards are utilized in modern day systems and thus multiple antennas are required, it is best if a single component can be reconfigured or tuned to various bands. Similarly phase shifters to provide beam scanning and polarization reconfigurable antennas are important for modern day congested wireless systems. Tunability of antennas or phase shifting between antenna elements has been demonstrated using various techniques which include magnetically tunable components on ferrite based substrates. Although this method has shown promising results it also has several issues due to the use of large external electromagnets and operation in the magnetically saturated state. These issues include the device being bulky, inefficient, non-integrable and expensive. In this thesis, we have tried to resolve the above mentioned issues of large size and large power requirement by replacing the large electromagnets with embedded bias windings and also by operating the ferrites in the partially magnetized state. New theoretical models and simulation methodology have been used to evaluate the performance of the microwave passive components in the partially magnetized state. A multilayer ferrite Low Temperature Cofired Ceramic (LTCC) tape system has been used to verify the performance experimentally. There exists a good agreement between the theoretical, simulation and measurement results. Tunable antennas with tuning range of almost 10 % and phase shifter with an FoM of 83.2/dB have been demonstrated in this work, however the major contribution is that this has been achieved with bias fields that are 90 % less than the typically reported values in the literature. Finally, polarization reconfigurability has also been demonstrated for a circular patch antenna using a low cost additive manufacturing technique. The results are promising and indicate that highly integrated ferrite based tunable components are feasible in small form factor, without the need of the large electromagnets and coils, and thus can be operated at very low bias levels as compared to the ones which are operated in the saturated state with external bias mechanisms.

The research presented covers the theory and design of feedback-driven matching networks for radio frequency power amplifiers. The study examines amplifier classifications, types of tunable components, feedback typologies, and control systems to achieve the desired operation. The work centers on designing and implementing a tunable matching network for an amplifier's input and output. The tunable systems provide the amplifier with a wide range of operational frequencies at reasonable power levels comparable to today's modern communication systems and produce millisecond-based tuning times. Simulated results are verified against a fabricated system prototype and tweaked to provide further insight into the design's operation.

In this report a model of a tunable narrow linewidth laser used for telecommunications is presented. The model uses both theoretical analysis and experimental data to create the mathematical models governing its behaviour and is aimed to be useful in a development environment with requirements on accuracy, efficient implementation and adaptability to future design. Results show that the model presented achieves high accuracy in both optical and electrical measurements. In summary the model could be useful in a development environment with further improvements in adaptability possible in the future.