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Abstract Internal waves have been identified as one of the most active mechanisms producing vertical mixing in continental slope and shelf waters. The major contribution of mixing are due to internal tides, however, shorter period internal waves are unlikely to be the main source of energy for mixing, especially on the inner part of the continental shelf. In this study, we observe the vertical mixing of huge internal waves in the Dongsha Atoll South China Sea. These solitary waves were originate near the Luzon Strait, propagated westward across the basin, evolving into internal solitary wave trains and dissipated at the western shallow continental shelf. The wave energy and phase speed reduced significantly during the shoaling process. Internal waves and their likely related induced mixing phenomena are analyzed based on multiple cruises of observations consisted of CTD hydrographic measurements, water samples and moored thermister strings. Data analyses show that the mixing processes are related to depths of water and the interfacial of wave. For depression wave in the deep water zone, upper layer water may push downward producing vertical mixing beyond the thermocline. The mixing usually dilutes the nutrients in the upper layer of water column. Statistics suggest that the N:P ratio is 12:1 which is lower than the standard value (16:1) indicating the region is nitrogen deficit, similar to most of the surface water in South China Sea. The depression solitons in deep water may evolved to a packet of elevation waves in the shallow water area at ¡§turning point¡¨ of approximately equal depth of upper and lower layers. The mixing of shallow water internal waves can entrain cold nutrient rich water from the lower layer into the frequently nutrient depleted subsurface layer to enhance the local coral reef ecosystem. For example, CTD profiles (2008.5.7) before and after the passage of internal wave show large differences. The vertical density distribution has dramatic change. The column was stratified in two layers in normal condition. The internal waves perturbed the water column into stepwise multi-layer density distribution. The water at 50 m showed temperature decrease by 6 ¢J, salinity increase by 23 psu, density increase by 1.8 , fluorescence decrease by 0.065 £gg/L etc. The MODIS chlorophyll images confirm the high concentration fertilized by the internal wave pumping near the NE region of the Dongsha Atoll.

Vertical simulations of ozone were made using a TAPM (The Air Pollution Model) at the Linyuan site in Kaohsiung County, southern Taiwan. Ozone was simulated at altitudes of 0, 100, 300, 500 and 1000 m from November 23 to 25 in 2005 and March 21 to 23 in 2006. The surface ozone concentrations that were predicted using TAPM were high (33.7−119 ppbv) in the daytime (10:00−16:00) and were low (10−40 ppbv) at other times, which predictions were consistent with the observations. The simulated surface ozone concentrations reveal that costal lands typically had higher ozone concentrations than those inland, because most industrial parks are located in or close to the boundaries of Kaohsiung City. Both measurements and simulations indicate that daytime ozone concentrations decreased quickly with increasing height at altitudes below 300 m; while nighttime ozone concentrations were lower at low altitudes (50 to 300 m) than at higher altitudes, partly because of dry deposition and titration of surface ozone by the near-surface nitrogen oxides (NOx) and partly because of the existence of the residual layer above the stable nocturnal boundary layer. The simulations show a good correlation between the maximum daytime surface ozone concentration and average nighttime ozone concentration above the nocturnal boundary layer.

<p>The present thesis deals with the ocean circulation from two viewpoints: <i>Pro primo</i>, the dependence of the global thermohaline ocean circulation (THC) on the parameterization of the small-scale vertical mixing processes in the interior of the ocean, and, <i>pro secundo</i>, the dynamics of the circulation in the Nordic Seas. The THC is found be crucially dependent on the parameterization of the small-scale vertical mixing, two types of which have been compared: The commonly used constant diffusivity and a, physically more plausible, stability-dependent parameterization. For constant diffusivity the circulation weakens when the equator-to-pole surface density difference is decreased, consonant with commonly held prejudices. However, for stability-dependent diffusivity the circulation is enhanced. This conclusion has been reached using two investigative techniques, viz. a scale analysis as well as a numerical zonally-averaged and equatorially symmetric THC model. However, if asymmetric flows are considered, the dynamics become more complex to interpret. It has, nevertheless, been concluded that when the degree of asymmetry of the surface-density distribution is taken to be fixed, the response of the circulation to changes of the surface-density distribution corresponds to that from the symmetric investigation.</p><p>The studies of the Nordic Seas are mainly based on satellite-altimetric data providing Sea-Level Anomalies (SLAs). These are utilized to estimate the seasonal cycle as well as the inter-annual variability of the depth-integrated flows. The seasonal cycle is examined using the winter-to-summer difference of the barotropic flow, with focus on the entire region as well as on two sections extending from a common point in the central Norwegian Sea to Svinøy on the Norwegian coast and to the Faroe Islands, respectively. The total barotropic transport is estimated to be around 10 Sv larger during winter than in summer, of which 8 Sv are associated with the barotropic re-circulation gyre in the interior of the Norwegian Sea, the remainder being linked to the Atlantic inflow across the Iceland-Scotland Ridge. The inter-annual variability of the circulation in the Nordic Seas is investigated on the basis of a theoretical analysis permitting independent calculation of the barotropic flow along closed isobaths using SLA data as well as wind data. The barotropic flow based on SLA data is found to co-vary with the flow estimated using wind data.</p>

The present thesis deals with the ocean circulation from two viewpoints: Pro primo, the dependence of the global thermohaline ocean circulation (THC) on the parameterization of the small-scale vertical mixing processes in the interior of the ocean, and, pro secundo, the dynamics of the circulation in the Nordic Seas. The THC is found be crucially dependent on the parameterization of the small-scale vertical mixing, two types of which have been compared: The commonly used constant diffusivity and a, physically more plausible, stability-dependent parameterization. For constant diffusivity the circulation weakens when the equator-to-pole surface density difference is decreased, consonant with commonly held prejudices. However, for stability-dependent diffusivity the circulation is enhanced. This conclusion has been reached using two investigative techniques, viz. a scale analysis as well as a numerical zonally-averaged and equatorially symmetric THC model. However, if asymmetric flows are considered, the dynamics become more complex to interpret. It has, nevertheless, been concluded that when the degree of asymmetry of the surface-density distribution is taken to be fixed, the response of the circulation to changes of the surface-density distribution corresponds to that from the symmetric investigation. The studies of the Nordic Seas are mainly based on satellite-altimetric data providing Sea-Level Anomalies (SLAs). These are utilized to estimate the seasonal cycle as well as the inter-annual variability of the depth-integrated flows. The seasonal cycle is examined using the winter-to-summer difference of the barotropic flow, with focus on the entire region as well as on two sections extending from a common point in the central Norwegian Sea to Svinøy on the Norwegian coast and to the Faroe Islands, respectively. The total barotropic transport is estimated to be around 10 Sv larger during winter than in summer, of which 8 Sv are associated with the barotropic re-circulation gyre in the interior of the Norwegian Sea, the remainder being linked to the Atlantic inflow across the Iceland-Scotland Ridge. The inter-annual variability of the circulation in the Nordic Seas is investigated on the basis of a theoretical analysis permitting independent calculation of the barotropic flow along closed isobaths using SLA data as well as wind data. The barotropic flow based on SLA data is found to co-vary with the flow estimated using wind data.

Open channel raceway bioreactors are a low-cost system used to grow algae for biofuel production. Microalgae have many promises when it comes to renewable energy applications, but many economic hurdles must be overcome to achieve an economic fuel source that is competitive with petroleum-based fuels. One way to make algae more competitive is to improve vertical mixing in algae raceway bioreactors. Previous studies show that mixing may be increased by the addition of mechanisms such as airfoils. The circulation created helps move the algae from the bottom to top surface for necessary photosynthetic exchange. This improvement in light utilization allowed a certain study to achieve 2.2-2.4 times the amount of biomass relative to bioreactors without airfoils. This idea of increasing mixing in open channel raceways has been the focus of the Utah State University (USU) raceway hydraulics group. Computational Fluid Dynamics (CFD), Acoustic Doppler Velocimetry (ADV), and Particle Image Velocimetry (PIV) are all methods used at USU to computationally and experimentally quantify mixing in an open channel raceway. They have also been used to observe the effects of using delta wings (DW) in increasing vertical mixing in the raceway. These efforts showed great potential in the DW in increasing vertical mixing in the open channel bioreactor. However, this research begged the question, does the DW help increase algae growth? Three algae growth experiments comparing growth in a raceway with and without DW were completed. These experiments were successful, yielding an average 27.1% increase in the biomass. The DW appears to be a promising method of increasing algae biomass production. The next important step was to quantify vertical mixing and understand flow patterns due to two DWs side-by-side. Raceway channels are wider as they increase in size; and arrays of DWs will need to be installed to achieve quality mixing throughout the bioreactor. Quality mixing was attained for several paddle wheel (PW) speeds. Also, an optimal spacing between the DWs in an array was found to be the width of the DW. This optimal spacing allows for the best increase in vertical mixing along the width of the channel. Dimensional analysis was performed using experimental data to estimate vertical mixing index (VMI) results for data obtained by larger scale DW experiments. This rough analysis showed that the VMI may be estimated from small to large scale within 26.6% and 26.5% when equating Reynolds and Froude numbers, respectively. These results suggest that quality mixing would still be present at a larger DW scale.

In a shallow shelf region, turbulent motion can have a major effect on coastal processes including ecosystem functioning, surface gas exchange and sediment resuspension. Many factors contribute to such turbulence; wind and wave forcing, buoyancy induced by surface heat fluxes and tidal forcing all play a key role in generating vertical mixing in this shallow region. Alongside these independent sources of turbulence, combinations thereof can lead to full-depth turbulent structures acting secondary to the mean flow and leading to enhanced vertical mixing throughout the entire water column. Field and laboratory experiments can often prove to be costly and time consuming, and reproducing or maintaining the complex flow dynamics of real world ocean flows is a constant challenge to these methods of research. As such, those interested in developing realistic and useful models of the marine environment to further understand its behavior often rely on 3-dimensional mathematical modeling and simulation. In this dissertation, simulations will be presented of turbulent flow and associated vertical mixing in a domain representative of the shallow coastal ocean, sufficiently far off shore that the land-ocean boundary does not significantly affect the flow behavior. This will be done using a large-eddy simulation (LES) method; solving the governing Navier-Stokes equations over a finite grid designed to capture the large, energy containing turbulent scales, and modeling the smaller, sub-grid scales. The simulations to be presented feature combinations of coastal forcing mechanisms which are either presently unexplored or the analysis of which has been hindered by the complexity of field measurements and the challenge of isolating independent causes of turbulent motion. This will include surface heat fluxes, tidal forcing and Langmuir (or wave) forcing, acting both in isolation and in conjunction with each other, in order to bridge existing gaps in knowledge and provide a more complete understanding of the generation of full-depth turbulent structures in this shallow coastal water column.

The South China Sea is a marginal basin with a complex circulation influenced by the East Asian Monsoon, river discharge and intricate bathymetry. As a result, both the mesoscale eddy field and the near-inertial energy distribution display large spatial variability and they strongly influence the oceanic transport and mixing. With an ensemble of numerical integrations using a regional ocean model, this work investigates how the temporal resolution of the atmospheric forcing fields modifies the horizontal and vertical velocity patterns and impacts the transport properties in the basin. The response of the mesoscale circulation in the South China Sea is investigated under three different forcing conditions: monthly, daily and six-hourly momentum and heat fluxes. While the horizontal circulation does not display significant differences, the representation of the vertical velocity field displays high sensitivity to the frequency of the wind forcing. If the wind field contains energy at the inertial frequency or higher (daily and six-hourly cases), then Vortex Rossby waves and near inertial waves are excited as ageostrophic expression of the vigorous eddy field. Those waves dominate the vertical velocity field in the mixed layer (vortex Rossby waves) and below the first hundred meters (near inertial waves) and they are responsible for the differences in the vertical transport properties under the various forcing fields as quantified by frequency spectra, vertical velocity profiles and vertical dispersion of Lagrangian tracers.

Le mélange vertical dans l’océan contribue au maintien de la Cellule Méridienne de Circulation Océanique (MOC) en permettant le renouvellement des eaux profondes. Une coupe transverse d’une partie de la MOC est réalisée par la radiale hydrologique OVIDE qui a lieu tous les 2 ans depuis 2002 entre le Portugal et le Groenland. L’énergie nécessaire au mélange est fournie par les ondes internes générées par le vent et la marée, et des mesures de micro-structure (VMP) en 2008 montrent des valeurs de dissipation Evmp intensifiées dans la thermocline principale et au niveau des topographies. Notre étude se base sur ces observations pour étudier la fine-structure verticale de l’océan et estimer indirectement la dissipation E due aux ondes internes à l’aide de mesures CTD et LADCP. La comparaison au mesures du VMP permet d’optimiser la paramétrisation de E en encadrant les observations par facteur 3 et leurs valeurs moyennes à ±30%. L’application sur l’ensemble des données OVIDE permet d’obtenir une cartographie du mélange a travers le bassin. La distribution géographique de la diffusion verticale K est similaire le long des 5 sections, avec des valeurs de l’ordre de 10−4m2/s dans la thermocline principale, au fond et au niveau des topographies, et de l’ordre de 10−5m2/s dans l’océan intérieur. Des différences régionales sont présentes et K peut être localement proche de 10−3m2/s. L’étude de la section FOUREX 1997 révèle une intensification de K le long de la dorsale médio-Atlantique où les valeurs moyennes sont de 2 à 3 plus fortes que le long des sections OVIDE. La distribution spatiale des échelles de Thorpe LT est corrélée avec celle du mélange. Néanmoins la dissi-pation basée sur LT surestime Evmp d’un facteur 10 à100, ce qui pourrait être dû à une mauvaise représentation de la durée de vie de la turbulence dans l’océan. Certains mécanismes susceptibles de générer des ondes internes sont proposés. Des sites possibles de génération par la marée sont localisés à l’aide d’un modèle simple de la trajectoire des rayons d’ondes. Une corrélation possible entre les mouvements géostrophiques et les ondes internes est envisagée dans la thermocline principale. Enfin l’étude des angles de Turner montre que des instabilités de double-diffusion peuvent être présentes sur une grande partie de la section. / Vertical mixing in the ocean contributes to sustain the Meridionnal Overturning. Circulation (MOC) by allowing the renewal of deep waters. A section across the MOC is performed by the hydrological radial OVIDE repeated every two years between Portugal and Greenland since 2002. The energy required for mixing is provided by internal waves generated by wind and tides and micro-structure measurements(VMP) in 2008 show intensified values of dissipation Evmp in the main thermocline and near topographies. Our study is based on these observations and aims tostudy the vertical fine-scale structure of the ocean. Estimates of the dissipation E due to internal waves are made with CTD and LADCP measurements. The comparison with VMP measurements allow us to optimize the parameterization of E by framing the observations by factor 3 and their mean values at ±30%. The systematic application to the OVIDE dataset provides a mapping of the mixing across the basin. Geographical distribution of the vertical diffusion K is similar along the five sections, with values near10−4m2/s in the main thermocline and at the bottom of topographies, and near 10−5m2/s in the ocean interior. Regional differences are present and K can belocally close to 10−3m2/s. Application to FOUREX1997 datas et reveals an increase of K along the Mid-Atlantic Ridge, where the average values are 2 to 3stronger than along OVIDE sections. The spatial distribution of Thorpe scales LT appears to be correlated with internal waves mixing patterns. Nevertheless dissipation estimates based on LT overestimates Evmp by a 10 to 100 factor, which maybe due to misrepresentation of the stage of turbulence development in the ocean. Some mechanisms that can generate internal waves are proposed. Probable sites where tidal generation could occur are located using a simple model of wave beam trajectory. A possible correlation between geostrophic flows and internal waves is considered in the main thermocline. Finally the study of Turnerangles shows that double-diffusion instabilities may bepresent over a large part of the section.