Sarcocystis neurona is a protozoan parasite that causes the serious neurologic disease equine protozoal myeloencephalitis (EPM). The life cycle of S. neurona progresses through multiple developmental stages that differ morphologically and molecularly. The S. neurona merozoite surface is covered by multiple related proteins, which are orthologous to the surface antigen (SAG) gene family of Toxoplasma gondii. The SAG surface antigens in T. gondii and another related parasite Neospora caninum are life cycle stage-specific and seem necessary for parasite transmission and persistence of infection. The present research was conducted to explore the gene family of SnSAGs in S. neurona. Specifically, the project identified new SnSAGs in the draft genome sequence of S. neurona and examined the stage-specific expression and potential function of these surface antigens. For the first part of the study, expression of the S. neurona merozoite surface antigens was evaluated in the sporozoite and bradyzoite stages. The studies revealed that SnSAG2, SnSAG3 and SnSAG4 are expressed by sporozoites, while SnSAG5 appeared to be downregulated in this life cycle stage. In S. neurona bradyzoites, SnSAG2, SnSAG3, SnSAG4 and SnSAG5 were either absent or expression was greatly reduced. For the second part of the study, the draft sequence of the S. neurona genome was searched for potential new SnSAGs. Multiple searches revealed sixteen potential new SnSAG genes, and bioinformatic analyses of the sequences revealed characteristics consistent with the SAG gene family. Two of the new SnSAGs, designated SnSAG7 and SnSAG8, have been characterized in detail. The studies showed that SnSAG7 is expressed by the merozoite stage, while SnSAG8 is expressed by the bradyzoite stage. The third part of the study assessed the role of SnSAGs in host cell attachment and/or invasion by S. neurona. Serum neutralization assays using polyclonal serum raised against SnSAG1, SnSAG2, SnSAG3, and SnSAG4 suggested that SnSAG1 and SnSAG4 play a role in host cell attachment and/or invasion; treatment with antibodies against SnSAG2 and SnSAG3 were inconclusive. The information acquired about the stage-specific expression of the SnSAGs, identification of new SnSAG paralogues, and their functional characterization will help to understand the importance of the SnSAG proteins for parasite survival and could lead to improved methods for EPM prevention and/or treatment.

Equine herpesvirus type-1(EHV-1) is a complex virus known for inducing various forms of disease in horses. In recent years, the number of cases of neurological disease caused by this virus has increased. While there are a number of possible sources for this recent surge, this project set out to determine if a genotypic shift in the latent population of the virus in favor of the neuropathogenic form of EHV-1 is the basis for the recent increase in frequency of EHV-1 neurologic disease. To ascertain if such a shift has in fact occurred, 450 EHV-1 isolates were obtained from fetal tissues resulting from single, sporadic cases of abortion in Thoroughbred broodmares in central Kentucky. Furthermore, the isolates utilized were from different decades (1951-2006) to determine if the genotypic shift was time-related. The isolates were propagated in cell culture, purified and the viral DNA isolated. Real-time allelic discrimination PCR analysis was performed on the DNA samples to identify the genotype of EHV-1. Statistical analysis of the PCR data indicates that the latent mutant population does appear to be increasing. Therefore, the recent increase in the number of outbreaks of EHV-1 neurological disease will most likely continue unless measures are devised to curtail further spread of the pathogen.

Channel catfish virus disease (CCVD) is the principal viral disease in the United States catfish industry. The CCVD is caused by channel catfish virus (CCV), with mortality reaching up to 100% in fingerlings. CCV is assigned taxonomically to the family Alloherpesviridae, genus Ictalurivirus, species Ictalurid herpesvirus 1 (IcHV-1). To date, virulence, immunogenicity, and genome plasticity of the CCV field isolates have not been investigated. Three genotypes of CCV (IcHV-1A, IcHV-1B, and BCAHV) were identified using restriction fragment length polymorphism (RFLP) analysis. Virulence assessment of three representative isolates of RFLP groups suggests that IcHV-1B (pooled survival [mean ± SE]: 58.3% ± 2.6) showed significantly lower survival than IcHV-1A (68.6% ± 2.4). Re-exposure of the survivors with a representative of IcHV-1A and IcHV-1B isolates indicates a robust cross-protective effect (relative percent survival [RPS]: 80-100%). Antigenic determinants against anti-CCV monoclonal antibody Mab-95 were conserved among IcHV-1A, and IcHV-1B; however, BCAHV possesses antigenically distinct epitopes (Neutralization index [NI] = 0). Although BCAHV and CCV have nearly colinear genomes (except for the absence of ORF16A in CCV), they represent distinct species, given that nucleotide identity is 93.9%. Moreover, infectivity trials indicated that channel and hybrid catfish fingerlings might be refractive to LD50 (1.3×105 TCID50/L) dosage of BCAHV. However, previous exposure to BCAHV has protected the channel and hybrid catfish against the subsequent infection with the ATCC strain of CCV (RPS:100%). Next, two discriminatory duplex probe-based qPCR assays were designed and validated to diagnose latent IcHV-1A and IcHV-1B. Spatio-temporal survey of six Mississippi catfish hatcheries indicated that the prevalence of latent CCV genotypes varied between 25-100%. Lastly, twenty one reference quality genomes of CCV field isolates were assembled, and phylogenomic analyses supported the monophyly of the CCV field isolates with BCAHV as their closest relative. The phylogenomic analyses confirmed the two distinct genotypes (IcHV-1A and IcHV-1B) identified in RFLP analysis and further allowed the segregation of the IcHV-1A genotype into two subgroups, IcHV-1A1 and IcHV-1A2. Results from the current studies lay the foundation for future research and will help formulate efficient management strategies to reduce the economic impact of CCV in the catfish industry.

Bovine respiratory disease (BRD) costs the cattle industry millions of dollars in costs in treatment and loss every year in the United States. A significant pathogen often contributes to BRD is Bovine Herpesvirus 1 (BoHV-1), a double stranded DNA virus with the ability to establish latency in the trigeminal ganglia and neurons. Primary infection with BoHV-1 results in immunosuppression that increases the risk of secondary bacterial infection and pneumonia. Because herpesviruses infect their hosts for life and can be reactivated in times of stress, BoHV-1 can present a recurring risk of BRD. The following research aims to expand the knowledge of the genome of this costly agricultural pathogen and provide evidence of viral features that can be further explored to increase the efficiency of its control.

Shelters often make euthanasia or adoption decisions based on the results of FeLV-FIV point-of-care tests but given the low estimated prevalence of these diseases and imperfect test performance, this might not be a good practice because of diagnostic error. The objectives of this study were to determine the true prevalence of FeLV and FIV in apparently healthy and sick shelter cats in Mississippi, estimate predictive value of the Zoetis Witness FeLV-FIV Rapid ImmunoMigration test results at the estimated true prevalences through Bayesian latent class modeling, and formulate testing recommendations for shelters. One chapter will review the literature on FeLV and FIV. The bulk of this thesis will focus on determining the true prevalence of retroviral infection in Mississippi shelter cat populations. The last chapter will use Bayesian modeling to estimate test performance and predictive value of test results in healthy and sick shelter cat populations.

Tick populations have been immigrating into northeast Tennessee from east Tennessee, Kentucky, Virginia, and North Carolina. Counties in states bordering northeast Tennessee harbor tick species associated with human illness. Human diseases transmitted by ticks include ehrlichiosis, spotted fever rickettsial group diseases, tularemia, anaplasmosis, babesiosis, Lyme disease, alpha-gal syndrome, Heartland virus, Powassan virus, and southern tick-associated rash illness (STARI). These diseases cause morbidity and mortality in human populations and may pose a high risk to individuals, wildlife, and livestock. The Cherokee National Forest covering the east Tennessee border provides a permissible environment for ticks to immigrate and thrive. Residents of northeast Tennessee frequently use the natural environment for a variety of purposes, creating exposure risk at the human-animal-environment interface. This study performed a scoping review and meta-analysis addressing topics informing epidemiological investigation of tick populations. The meta-analysis identified geography, climate, and Shannon-Wiener Diversity Index as the most significant variables associated with northeast Tennessee tick populations. Additionally, tick surveillance in northeast Tennessee counties was performed. These counties included Carter, Greene, Hancock, Hawkins, Johnson, Washington, and Unicoi. Primary tick species present in the summer included the American Dog tick (Dermacentor variabilis); the winter included the Blacklegged/Deer tick (Ixodes scapularis). Canonical correlation analysis was used to identify which environmental variables had the most influence, to what degree, and in a positive or negative direction. Altitude, total forest land, forest canopy, and fraction of surface water area were statistically significant. More altitude was correlated with more clinical cases; less total forest land, canopy, and fraction of surface water area was correlated with less clinical cases. Lastly, species distribution modeling of the invasive Asian longhorned tick was conducted. Study results indicate a low to moderate risk for tick-borne illness exposures among human populations, which is poised to increase. Species distribution modeling and clinical case data reports suggested an increasing exposure risk from improved habitat suitability. Increased risk is related to climate change and tick population growth in metropolitan areas. Finally, surveillance and control methods are summarized for integration into public health interventions.

Equine arteritis virus (EAV) has a global impact on the equine industry being the causative agent of equine viral arteritis (EVA), a reproductive, respiratory, and systemic disease of equids. A distinctive feature of EAV infection is that it establishes long-term persistent infection in the reproductive tract of stallions and is continuously shed in the semen (carrier state). Recent studies showed that long-term persistence is associated with a specific allele of the CXCL16 gene (CXCL16S). However, the cellular and molecular mechanisms underlying the establishment and maintenance of persistent infection are yet to be determined. The studies were undertaken herein unequivocally demonstrated that the ampulla is the main EAV tissue reservoir rather than immunologically privileged tissues (i.e., testes) and that EAV has specific tropism for stromal cells and CD8+ T and CD21+ B lymphocytes but not glandular epithelium in the reproductive tract. Furthermore, persistent EAV infection is associated with a significant humoral, mucosal antibody and inflammatory response at the site of persistence, characterized by induction of high levels of neutralizing antibodies (IgG1), mucosal anti-EAV-specific IgA, IgG1, IgG3/5, and IgG4/7 with variable neutralizing efficacy; and moderate, multifocal lymphoplasmacytic ampullitis, with significant infiltration of T lymphocytes (mainly CD8+ and low numbers of FOXP3+ lymphocytes), CD21+ B lymphocytes, diverse Ig-secreting plasma cells, and Iba-1+ and CD83+ tissue macrophages/dendritic cells. Moreover, EAV long-term persistent infection is associated with a CD8+ T lymphocyte transcriptional profile with upregulation of T-cell exhaustion-related transcripts and homing chemokines/chemokine receptors (CXCL9-11/CXCR3 and CXCL16/CXCR6), orchestrated by a specific subset of transcription factors (EOMES, PRDM1, BATF, NFATC2, STAT1, IRF1, TBX21), which are associated with the presence of the susceptibility allele (CXCL16S). Finally, these studies have determined that long-term EAV persistence is associated with the downregulation of a specific seminal exosome-associated miRNA (eca-mir-128) along with an enhanced expression of CXCL16 in the reproductive tract, a putative target of eca-mir-128. These findings provide evidence that this miRNA plays a crucial role in the regulation of the CXCL16/CXCR6 axis in the reproductive tract of persistently infected stallions, a chemokine axis strongly implicated in EAV persistence. The findings presented herein suggest that complex host-pathogen interactions shape the outcome of EAV infection in the stallion and that EAV employs complex immune evasion mechanisms favoring persistence in the reproductive tract. Further studies to identify specific mechanisms mediating the modulation of the CXCL16/CXCR6 axis and viral immune evasion in the reproductive tract of the EAV long-term carrier stallion are warranted.

Human body lice, Pediculus humanus humanus, and head lice, Pediculus humanus capitis, have been hematophagous ectoparasites of humans for thousands of years. Despite being ecotypes, only body lice are known to transmit bacterial diseases to humans, and it appears that lower humoral and cellular immune responses allow body lice to possess a higher vector competence. We previously observed that the transcription level of the defensin 1 gene was up-regulated only in head lice following oral challenge of Bartonella quintana, a causative agent of trench fever, and also that body lice excreted more viable B. quintana in their feces. In this study, we first investigated this differential immune response by performing RNAi to knockdown defensin 1 by dsRNA injection. B. quintana was orally infected 72 h after injection and proliferation was compared at 2 hours (day 0) and day 4 post-infection. At day 0, bacterial cell numbers increased 1.5-fold in defensin 1 (Def1(-)) knocked down head lice compared with non-knocked down, pQE30-dsRNA injected, head lice control. At day 4, Def1(-) knocked down head lice had 2.55-fold more bacterial cells than control head lice and 1.65-fold greater than body lice, indicating that defensin 1 was active in reducing B. quintana cell number in non-knocked down head lice. Second, the levels of cytotoxic reactive oxygen species (ROS) generated by the epithelial cells of the alimentary tract were measured using two general indictors of ROS in both body and head lice at day 1 and day 4 following B. quintana challenge. Challenged body lice showed a 42% and 34% increase in ROS, whereas head lice showed a 70% and 22% increase at day 1 using CM-H2DCFDA and HPF as general indicators, respectively. On day 4, all challenged lice showed similar ROS levels except for body lice which maintained their ROS levels (40% increase using CM-H2DCFDA). Head lice are likely to have multiple immune and/or non-immune factors that suppress B. quintana proliferation, and the production of sustained ROS levels and/or the single knockdown of Defensin 1 is not enough to increase B. quintana proliferation in head lice to that seen in body lice.