The thesis examines control and eradication of Guinea worm in West Africa and investigates factors, especially water supply, related to the incidence of Guinea worm. The study was carried out in North Zou, Benin between 1987 and 1990 and in Nigeria between 1989 and 1993 during water supply and Guinea worm eradication programme execution. About 5% of villages in Nigeria, located in one half the LGAs were infected. The number of annual cases in a region was related to the previous year's cases, although 5-10% of the regions changed between infected and non-infected. Cases were not statically focused in villages. The relative risk of infection in a village based on the previous year's infection was 1.74 in North Zou. Incidence varied inversely and endemicity varied directly with village population. Villages of all sizes were infected. Prevalence varies seasonally by region. Incidence was low at high altitudes, in sandy and alluvial soils, in areas with high or low annual rainfall and in densely populated areas. Incidence was not otherwise related to rainfall, vegetation, altitude, soils, geology or distance to rivers. Incidence among Muslims and Christians was the same but varied by ethnic group. Incidence in an area was strongly related to the ratio of females to males. School attendance in endemic areas fell during the transmission period. Losses in Nigeria in 1990/91 were £16 million. Provision of improved water supply lowered incidence by 50%. Endemicity was 20% lower in villages in North Zou with water supply but endemicity did not fall immediately following provision and a difference was not seen in Nigeria. Water supply to all infected villages in Nigeria identified in 1990/91 would cost £23 million. Three possible water supply strategies were examined. Ten water supply options were considered and roof rainwater catchment was found the most promising. Factors that reduce the effective use of water supply were examined. Water supply coverage in endemic countries is 27%. The countries are among the poorest and least developed in the world. The lack of static focus of cases in villages, the low impact of water supply, and the difficulty of supplying water to all endemic areas make Guinea worm eradication by 1999 unlikely.

Several sediment characteristics were analyzed to determine their suitability for use as potential normalization factors for the bioavailability of neutral organic compounds sorbed to sediments. Percent organic carbon, cation exchange capacity and particle surface area were measured sediment characteristics that varied sufficiently to encompass the range in observed sediment toxicity. Laboratory sediment toxicity test data using fluoranthene suggest that there is no biologically significant correlation between sediment toxicity and sediment characteristics (organic carbon, cation exchange capacity, particle size distribution, particle surface area). Fluoranthene amended sediments with similar organic carbon contents do not yield similar toxicities due to sorbed fluoranthene and thus do not support the organic carbon normalization approach for evaluating sediment quality or for sediment criteria development.

M.Sc. / Metal ions have become an increasing source of pollution in the natural waters of South Africa. This phenomenon is related to the rapid industrial, mining and agricultural activity growth along rivers, especially in the Upper catchment of the Olifants River, Mpumalanga. In general, metal ions have - negative effects on the physiology of fish and other aquatic biota in metal polluted waters. In this study. the sublethal effects of, manganese were determined by exposing the freshwater fish, Oreochromis mossambicus, to this metal in an experimental flow-through system. The exposure times were divided in acute (96 hours) and chronic (26 days) exposures, both at 23 ± 1°C. The results obtained showed changes in the general, haematological, metabolic, osmoregulatory variables, as well as the differential white blood cell counts. These changes indicated several effects in the physiology of a mossainblais after sublethal manganese exposure. Significant differences (P < 0.05) were found between the haematological variables of the control and exposed fish. During chronic exposure, an oxygen deficiency developed due to , the epithelial lifting of gill lamellae. As a result of hypoxia the red blood cell numbers, haemoglobin-, haematocrit and lactate concentrations increased to uplift the depleted oxygen situation. The significant differences (P < 0.05) found in the sodium, potassium,. calcium and chloride concentrations are mainly as a result of gill damage. Manganese showed a disruptive influence on the structural organization of the gill. The differential white blood cell counts performed , showed significant fluctuations. This leucocytosis and leucopenia are normal reactions of the fishes’ body against infections of foreign substances, such as metal ions. It was concluded that the general haematology, metabolism, osmoregulation and differential white blood cell counts can, be used as indicators in detecting the effects of sublethal manganese exposure on fish.

Ph.D. (Aquatic Health) / Please refer to full text to view abstract

M.Sc. (Zoology) / Viticulture is an important agricultural practice in many countries. The long term use of pesticides in vineyards has resulted in increased concentrations of such pollutants in sediments, water and other environmental compartments. Mitigation measures in agriculture, especially vineyard agriculture, are a prerequisite to the sustained integrity of the natural environment, and specifically the aquatic environment. Mitigation presents itself in the form of water bodies, riparian buffer strips, ground vegetation cover, grassed field paths, natural or artificial wetlands and modification of pesticide application rate. However, to our knowledge no studies exist which highlight the state of dams related to viticulture or the use of mitigation measures, in South Africa. The study aimed to quantify the cumulative risk posed to dams on wine farms and the effect of pesticides (fungicides, herbicides and insecticides) on aquatic ecosystems while evaluating the use of mitigation measures in South African viticulture. Epilithic diatom community structure assessment and frustule abnormalities; zooplankton and macroinvertebrate community structure assessment, and characterization of mitigation measures were carried out at nine representative study sites on wine farms in the Western Cape, South Africa. Pesticide risk assessment models PRIMET and PERPEST were employed to assess the risk that pesticides pose at each site from available data. The Relative Risk Model was used to assess the risk posed to identified Risk Regions. Different risk categories were observed across the sites from PRIMET and PERPEST, ranging from no risk to high risk for specific pesticides and relative risk among the risk regions was assessed. Diatom community structure displayed spatial and temporal variability between sites as well as observable diatom frustule abnormalities due to pesticide input. Zooplankton and macroinvertebrate communities displayed variability spatially as well as temporally and this was linked to the presence of pesticides confirming the predictions from PRIMET, PERPEST and the RRM.

MSc. (Zoology) / The Albasini Dam was used as a reference site outside the DDT (1, 1, 1-trichloro-2, 2-bis (p-chlorophenyl) ethane) - sprayed area in a previous survey conducted from 2006 to 2008. DDT, endocrine disrupting chemicals and inorganic chemicals were detected in the dam. A histological analysis of fish from the dam showed histological alterations in heart, liver, gills, and gonads. Therefore, it was necessary to follow up the health status of the dam by monitoring the levels of organic and inorganic chemicals and their effects on fish. The aim of the present study was to determine the health status of three freshwater fish species, Clarias gariepinus, Oreochromis mossambicus, and Coptodon (Tilapia) rendalli from the Albasini Dam, using fish histology as a biomonitoring tool. In total, 18 fish were sampled using gill nets; these included Clarias gariepinus (n=5); Coptodon (Tilapia) rendalli (n=4) and Oreochromis mossambicus (n=9). The histology-based fish health assessment included a standard fish necropsy; a calculation of blood parameters (haematocrit, leukocrit and total plasma protein); somatic indices and the condition factor and a qualitative and semi-quantitative histological assessment of five target organs: liver, heart, gills, kidney and gonads. Water, sediment and fish muscles samples were collected and analysed for inorganic chemicals and organic chemicals. Inorganic chemicals were analysed by means of Inductively Coupled Plasma-Mass Spectrometry (ICP-MS) and Inductively Coupled Plasma-Optic Emission Spectrometry (ICP-OES). Organic chemicals in water and fish muscles were analysed using Gas Chromatography-Mass Spectrometry (GC-MS). Nutrients and physical parameters of water were also measured...

L’empreinte humaine sur Terre est si profonde qu’elle entraine des changements environnementaux qui affectent et modifient le fonctionnement des écosystèmes. Parmi tous les biotopes, les écosystèmes aquatiques continentaux sont des habitats remarquables qui abritent une grande biodiversité, mais qui sont aussi les plus menacés par les activitéshumaines. Les principales causes de la perte de qualité de l'eau et de la perturbation des ces écosystèmes comprennent la pollution des eaux et l'introduction d'espèces exotiques. La partie première partie de ce travail de thèse a montré des invasions parasitaires sur les populations de tortues d'eau douce indigènes, transmis par des espèces de tortues introduites. De plus, la nécessité d'étudier et de décrire les nouvelles espèces de parasites invasives avec des techniques plus performantes a été soulignée. La deuxième partie de cette thèse a consisté en l'élaboration d'un outil pour évaluer l'état de la santé des populations de tortues d'eau douce sauvages, ce qui reflète également le niveau de contamination des cours d'eau. / Human imprint on Earth is actually so profound leading global environmental changes that affects and modifies the functioning of ecosystems. Among the natural biomes, freshwater ecosystems are remarkable habitats that comprise great species biodiversity but are also the most threatened by human activities. The main causes of the loss of water quality anddisruption of freshwater ecosystems includes water pollution and the introduction of alien species. The fisrt part of this thesis showed invasion of parasites on native freshwater turtle populations, carried by introduced turtle species. Furthermore, it highlighted the necessary to study and describe the new invasive parasite species with more performant technics. The second part of this thesis consisted in the development of a tool to evaluate the status of thehealth of wild freshwater turtle populations, allowed also the level of contamination of the watercourses.

Magister Scientiae - MSc / This study forms part of a broader project co-funded by the Water Research Commission (WRC), and CSIR Parliamentary Grant (PG) and Strategic Research Panel (SRP) research grants, aimed at surveying selected water resources within the 19 Water Management Areas in South Africa. Furthermore, it aims at determining the concentrations of Hg and MeHg in various environmental compartments collected from priority water resources, to identify the potential Hg hotspots, and to assess the degree of compliance with national and international guidelines. Mercury concentrations in the environment have increased globally and this has caused much anxiety in terms of the adverse effects it has on aquatic ecosystems, their organisms, and the communities they sustain. Human health risks associated with the consumption of fish elevated containing Hg concentrations have received minimal attention particularly in South Africa. It is imperative that any potential adverse impacts of Hg on aquatic ecosystems, and the subsequent impacts on human health, be investigated. / South Africa

Please read the abstract in the section 00front of this document / Thesis (PhD (Applied Science: Chemistry))--University of Pretoria, 2007. / Chemistry / unrestricted

Classiquement le transfert des contaminants dans le milieu souterrain est modélisé par un couplage des processus de transport physiques (écoulements contrôlés par les structures géologiques poreuses) et des processus de dégradation ou d'immobilisation chimiques et biologiques. Tant sur les structures géologiques que sur la chimie et la physique, les modèles sont de plus en plus détaillés mais de plus en plus difficiles à calibrer sur des données toujours très parcellaires. Dans cette thèse, nous développons une approche alternative basée sur des modèles parcimonieux sous la forme d’un simple graphe de compartiments interconnectés généralisant les modèles d’interaction de continuums (MINC) ou de transfert à taux multiples (MRMT). Nous montrons que ces modèles sont particulièrement adaptés aux milieux dans lesquels la diffusion de solutés occupe un rôle prépondérant par rapport à l’advection, tels les sols ou les aquifères très hétérogènes comme les aquifères fracturés. L'homogénéisation induite par la diffusion réduit les gradients de concentration, accélère les mélanges entre espèces et fait de la distribution des temps de résidence un excellent proxy de la réactivité. En effet, ces structures simplifiées reconstituées à partir d’informations de temps de résidence se révèlent également pertinentes pour des réactions chimiques non linéaires (e.g. sorption, précipitation/dissolution). Nous montrons finalement comment ces modèles peuvent être adaptés automatiquement à des observations d’essais de traceurs ou de réactions de biodégradation. Ces approches parcimonieuses présentent de nombreux avantages dont la simplicité de développement et de mise en œuvre. Elles permettent d’identifier les déterminants majeurs des échanges entre zones advectives et diffusives ou entre zones inertes et réactives, et d’extrapoler des processus de réactivité à des échelles plus larges. L’utilisation de données de fractionnement isotopique est proposée pour améliorer la dissociation entre l’effet des structures et de la réactivité. / Modelling of contaminant transfer in the subsurface classically relies on a detailed representation of transport processes (groundwater flow controlled by geological structures) coupled to chemical and biological reactivity (immobilization, degradation). Calibration of such detailed models is however often limited by the small amount of available data on the subsurface structures and characteristics. In this thesis, we develop an alternative approach of parsimonious models based on simple graphs of interconnected compartments, taken as generalized multiple interacting continua (MINC) and multiple rate mass transfer (MRMT). We show that this approach is well suited to systems where diffusion-like processes are dominant over advection, like for instance in soils or highly heterogeneous aquifers like fractured aquifers. Homogenization induced by diffusion reduces concentration gradients, speeds up mixing between chemical species and makes residence time distributions excellent proxies for reactivity. Indeed, simplified structures calibrated solely from transit time information prove to provide consistent estimations of non-linear reactivity (e.g. sorption and precipitation/dissolution). Finally, we show how these models can be applied to tracer observations and to biodegradation reactions. Two important advantages of these parsimonious approaches are their facility of development and application. They help identifying the major controls of exchanges between advective and diffusive zones or between inert and reactive zones. They are also amenable to extrapolate reactive processes at larger scale. The use of isotopic fractionation data is proposed to help discriminating between structure-induced effects and reactivity.