During early development of Xenopus laevis, gastrulation is a key morphogenetic event which transforms the embryo into three of primary germ layers: ectoderm, mesoderm, and endoderm. In order for the physical separation of these layers to occur, cells have to acquire specific properties that distinguish one layer from another. These properties, which include cell adhesion and migration, should be reflected in the tissue-specific proteome. While genetic analysis has led to the determination of a number of proteins involved in germ layer formation, this method would not have identified those proteins regulated on a translational or post-translational level. In this study, we have developed a two-dimensional gel based comparative proteomic approach employing difference gel electrophoresis (DiGE) to identify proteins involved in germ layer morphogenesis during Xenopus gastrulation. Differences between the physical properties of the ectoderm and mesoderm are likely based on differences in the proteomes of the cell surface and/or cortex. We therefore analyzed plasma membrane enriched fractions, obtained using discontinuous sucrose density gradient centrifugation. The Decyder program was used to quantify expression changes with statistical confidence across multiple DiGE gels, provide independent confirmation of distinct expression patterns from the individual experiments, and demonstrate high reproducibility between replicate samples. The identity of 23 proteins, which were obtained from 33 analyzed spots, was determined using mass spectrometry. Our proteomic analysis of Xenopus ectoderm and mesoderm identified alterations in proteins involved in cytoskeletal organization, signal transduction, protein folding, vesicle trafficking, and in glycolysis. We have also demonstrated the feasibility of proteomics in Xenopus, and have therefore shown that proteomics may be a valuable tool for analysis of early development in this system.

Modulation of cell adhesion is essential to the cell rearrangements that characterize Xenopus gastrulation. The spatial and temporal regulation of cell movement requires a highly coordinated cross-talk between cadherin and integrin adhesion receptors. Beta-parvin is an integrin associated scaffolding protein consisting of two calponin homology (CH) domains. Xenopus beta-parvin is highly conserved being ~95% similar to mammalian orthologs. Beta-parvin is expressed in the blastocoel roof and dorsal marginal zone of the embryo during gastrulation, suggesting a potential role in morphogenesis. Over-expression of full-length beta-parvin has no effect on embryogenesis, however, over-expression of either CH domain causes a failure in gastrulation. When over-expressed the CH1 domain causes a failure in fibronectin (FN) matrix assembly, epiboly and convergent extension in vivo. CH1 domain over-expression also inhibits tissue separation (TS) and Brachet’s cleft formation. The CH1 domain of beta-parvin localizes to sites of cell-cell adhesion, and down-regulates C-cadherin adhesion through activation of Rac1, independent of receptor expression. Significantly, the CH1 domain can rescue convergent extension downstream of integrin ex vivo suggesting a role for beta-parvin in the integrin mediated control of cell intercalation. Over-expression of the CH2 domain also inhibits morphogenesis in a similar fashion as CH1. However, the CH2 domain localizes to sites of integrin adhesion and inhibits integrin function resulting in a loss of FN assembly. The CH2 domain binds ILK and inhibits integrin function. When over-expressed the CH2 domain promotes TS in the pre-involution mesoderm through the activation of Rho. While the CH1 domain inhibits TS through Rac and the CH2 domain promotes TS through Rho, full-length beta-parvin over-expression has no embryonic phenotype and its signaling properties appear to be intermediate between expression of either isolated CH domain. At the dorsal lip full-length beta-parvin shuttles between integrin in the pre-involution mesoderm and cell-cell adhesion sites in the post-involution mesoderm indicating it plays significant roles in the previously characterized integrin-cadherin cross talk. My research has defined novel roles for beta-parvin as a key player in the regulation of integrin-cadherin cross-talk during tissue morphogenesis.

Polarized cell movements are essential to the cell rearrangements that occur during morphogenesis. In Xenopus, cell polarity is reflected in the directional cell intercalations that drive the morphogenetic movements characterizing gastrulation. While these cell behaviours are well described, the molecular mechanism underlying this cell polarity is unknown. PAR-3 is a multi-domain scaffolding protein and a key regulator of cell polarity. I have isolated a cDNA encoding Xenopus PAR-3 and generated several mutant constructs, each lacking a conserved domain. Initial characterization of GFP-tagged PAR-3 in A6 cells demonstrates localization to points of cell-cell contact in epithelial sheets, as well as at the leading edge of migrating cells. PAR-3 constructs lacking the CR1 or PDZ1 domain fail to compartmentalize properly and are found in the cytoplasm. Eliminating the PDZ3 domain resulted in a loss of contact inhibition. Mutation of the aPKC phosphorylation site created a membrane hyper-accumulation phenotype. Together these data suggest that the CR1 and PDZ1 domains mediate membrane compartmentalization that is modulated through aPKC phosphorylation, while the PDZ3 domain is required for contact inhibition. In embryos, PAR-3 is expressed throughout gastrulation and over-expression of PAR-3 inhibits blastopore closure indicating a requirement during gastrulation. Inhibition is relieved when the construct lacking the CR1 domain is over-expressed. PAR-3 was localized to the cell periphery in axial mesoderm. Localization was abolished with deletion of the CR1 domain indicating that membrane targeting of PAR-3 is required for gastrulation and this targeting is dependent on oligomerization of PAR-3. This investigation also suggests PAR-3 functions independent of the PAR complex in Xenopus embryos indicating involvement of a different PAR-3 signaling pathway.

The importance of gut associated lymphoid tissues has been extensively reported in higher vertebrates, but less is known in lower vertebrates. In mammals immunoglobulin (Ig)A is the primary Ig of mucosal immunity. But no IgA has been identified in cold-blooded animals. In higher vertebrates, antigen must stimulate the lymphoid tissues in the intestines to elicit an IgA response, and cytokines from CD4 positive helper T cells are required for B cell switch. It is not known if this is the case in lower vertebrates, or if T cell help evolved before or after class switch recombination between functional antibody isotypes. My study will fill in these gaps in our knowledge by comparing oral antigen inoculation relative to intraperitoneal antigen inoculation in frogs (Xenopus sp.). Oral immunization is a novel approach to eliciting immune responses in Xenopus. I propose that IgX will increase with oral inoculation compared to intraperitoneal injection. This would be the first demonstration of class switch upon oral immunization to a mucosal isotype in the first vertebrates that employs higher vertebrate Ig heavy chain switch mechanism, which would shed light on the most fundamental aspects of our humoral adaptive immune system. Using a total Ig ELISA protocol, measuring total relative levels of IgM, there was no difference between the first three groups of orally immunized frogs compared to intraperitoneally immunized frogs. However, a response to serum IgX was seen in the first group. On the other hand, the refined Ag-specific ELISA protocol did present a significant increase in serum IgM response in frogs immunized systemically over orally immunized animals, but not an overall IgX response. Phylogenetic analysis suggests that, contrary to initial reports, IgA evolved from IgX. With consideration of entire constant region and individual constant domain analyses as well as synteny and function, we suggest new hypotheses of vertebrate antibody evolution to be tested as immunogenetic coverage of more species continues to expand.

Kin-recognition abilities, first demonstrated 25 years ago in toad tadpoles, now appear to be widespread among amphibians. In some vertebrates kin recognition is based, at least in part, on highly polymorphic major histocompatibility complex (MHC) genes. Besides protecting animals from disease resistance, MHC genes regulate social behaviour. They allow relatives to recognise one another so that they can cooperate for mutual benefit. These two seemingly distinct functions of MHC genes may be integrally related, because animals need to outbreed to optimise the immune systems of their offspring. The ability to discriminate MHC-type is therefore likely to facilitate kin discrimination in tadpoles. I tested association preferences of African clawed-frog (Xenopus laevis) tadpoles in a laboratory choice apparatus. As in other anuran species, I found that tadpoles at earlier developmental stages preferentially associate with unfamiliar siblings over unfamiliar non-siblings but that this preference reverses during development. Tadpoles approaching metamorphosis demonstrated a reversal in their preference; they preferentially school with non-kin rather than kin. The ontogenetic switch in larval schooling preferences coincides with the onset of thyroid hormone (TH) controlled development and may be indicative of decreased fitness benefits associated with schooling with kin at later developmental stages. These may result from an increase in intraspecific competition, predation, or disease susceptibilities of prometamorphic individuals. Alternatively, the kin avoidance behaviours observed at later larval stages might reflect disassociative behaviour that facilitates inbreeding avoidance at reproductive maturity. This is the first study to find a shift from an association preference for kin to non-kin during amphibian larval development. Using allele-specific PCR techniques to MHC-type tadpoles, I tested association preferences among siblings based on shared MHC haplotypes. By using only full siblings in experimental tests, I controlled for genetic variation elsewhere in the genome that might influence schooling preferences. I found that X. laevis tadpoles discriminate among familiar full siblings based on differences at MHC genes. Subjects from four families preferentially schooled with MHC-identical siblings over those with which they shared no or one haplotype. Furthermore, the strength of tadpoles’ MHC-assortative schooling preferences significantly correlated with amino acid differences in the peptide-binding region (PBR) of both the MHC class I and II loci. Since MHC-PBR polymorphisms determine the pool of peptides that can serve as ligands for MHC molecules, these findings support the hypothesis that MHC peptide ligands mediate MHC type discrimination. As test subjects were equally familiar with all stimulus groups, tadpole discrimination appears to involve a self-referent genetic recognition mechanism whereby individuals compare their own MHC type with those of conspecifics. I also found that non-MHC-linked genetic differences contribute to tadpole association preferences in tests that contrast MHC and kinship. Tadpoles did not discriminate between MHC-similar non-siblings and MHC-dissimilar siblings and preferentially associated with MHC-dissimilar non-siblings rather than MHC-similar non-siblings. Although the MHC may be not solely responsible for the genetically determined cues that direct tadpole association preferences, it certainly is important in facilitating discrimination among conspecifics in X. laevis tadpoles. MHC-based discrimination may be retained through ontogeny and serve to maintain MHC-polymorphisms by facilitating disassortative mating.

Thesis (Ph. D.)--University of Missouri--Columbia, 1996. / "December 1996." Typescript. Vita. Includes bibliographical references (leaves 138-152). Also available on the Internet.

Thesis (M. Med. Sc.)--University of Hong Kong, 2002. / Includes bibliographical references (leaves 50-56).

Thesis (Ph.D.)--University of Texas at Dallas, 2009. / Includes vita. Includes bibliographical references (p. 78)

Thesis (M.Med.Sc.)--University of Hong Kong, 2002. / Includes bibliographical references (leaves 50-56). Also available in print.

The experiments were focussed on three protein-nucleic acid interactions in the Xenopus oocyte: TFIIIA-5S RNA, TFIIIA-5S DNA and ribosomal protein L5-5S RNA. The binding affinities and contact sites of the proteins to the nucleic acids were studied. For studying the TFIIIA-5S RNA interaction, block mutations were constructed in helical stems II, III, IV and V of Xenopus laevis oocyte 5S RNA. The affinities of these mutants for binding to transcription factor IIIA were determined using a nitrocellulose filter binding assay. Mutations in stems III and IV had little or no effect on the binding affinity of TFIIIA for 5S RNA. However, single mutants in stems II and V (positions 16-21, 57-62, 71-72, and 103-104) which disrupt the double helix, reduce the binding of TFIIIA by a factor of two- to three-fold. In contrast, double mutants (16-21/57-62, 71-72/103-104) which restore the helical structure of these stems, but with altered sequences, fully restore the TFIIIA binding affinity. The experiments reported here indicate that the double helical structures of stems II and V, but not the sequences, are required for optimal TFIIIA binding. The effects on TFIIIA binding affinity of a series of substitution mutations in the Xenopus laevis oocyte 5S RNA gene were quantified. These data indicate that TFIIIA binds specifically to 5S DNA by forming sequence-specific contacts with three discrete sites located within the classical A and C boxes and the intermediate element of the internal control region. Substitution of the nucleotide sequence at any of the three sites significantly reduces TFIIIA binding affinity, with a 100-fold reduction observed for substitutions in the box C subregion. These results are consistent with a direct interaction of TFIIIA with specific base pairs within the major groove of the DNA. In contrast, the TFIIIA binding data for the same mutations expressed in 5S RNA indicates that the protein does not make any strong sequence-specific contacts with the RNA. Although the protein footprinting sites on the 5S DNA and 5S RNA are coincident, nucleotide substitutions in 5S RNA which moderately reduce TFIIIA binding affinity do not correspond at all to the three specific TFIIIA interaction sites within the gene. For investigating the L5-5S RNA interaction, a cDNA encoding ribosomal protein L5 of Xenopus laevis was subcloned into a T7 expression vector and expressed in Escherichia coli. The resulting soluble fusion protein with a histidine tag at the N-terminus was purified by affinity chromatography to 95% homogeneity. The equilibrium binding of recombinant L5 to Xenopus 5S ribosomal RNA was characterized, and the affinity of the protein for a set of 5S RNA mutants was quantitatively measured using a nitrocellulose filter binding assay. L5 binds to 5S RNA with properties similar to those of the TFIIIA-5S RNA interaction. However, unlike TFIIIA, L5 was insensitive to changes in either the sequence or the secondary structure of the 5S RNA. The results from these studies indicate that the specific protein-nucleic acid interactions in the biological pathway of 5S RNA use distinct mechanisms. / Graduate