In plants, the generation and supply of methyl units is important in one-carbon (C-1) metabolism, which is essential to all organisms. I have identified a series of cDNA sequences encoding N5, N10-methylenetetrahydrofolate reductase (MTHFR), cobalamin-independent methionine synthase (Met Syn), S-adenosylmethionine synthetase (isoform I, AdoMet Syn2661 and isoform II, AdoMet Syn605), S-adenosylmethionine decarboxylase (SAMDC), serine hydroxymethyltransferase (SHMT) and N5, N10-methenyltetrahydrofolate cyclohydrolase / N5, N10-methylenetetrahydrofolate dehydrogenase (THFC/THFD) in the pathways of generation and supply of methyl units. These are from a cDNA library of mRNA from a susceptible wheat (Triticum monococcum) (Tm) line 441 epidermis, 24 h after inoculation with powdery mildew fungus (Blumeria graminis f. sp. tritici) (Bgt). Phylogenetic tree cluster analysis and subcellular localization prediction by TargetP revealed that MTHFR, Met Syn, AdoMet Syn605, AdoMet Syn2661, SAMDC, and THFC/THFD may be localized in cytosol; SHMT may be localized in mitochondria. Northern blot analysis indicated that expression of MTHFR, Met Syn, AdoMet Syn2661, AdoMet Syn605 and SAMDC genes was up-regulated by powdery mildew infection, abiotic stresses and treatments with stress signal molecules; expression of SHMT and THFC/THFD was either constitutive or down-regulated. These results suggest a close metabolic link between various stresses and the pathways of generation and supply of methyl units in this wheat.

In plants, the generation and supply of methyl units is important in one-carbon (C-1) metabolism, which is essential to all organisms. I have identified a series of cDNA sequences encoding N5, N10-methylenetetrahydrofolate reductase (MTHFR), cobalamin-independent methionine synthase (Met Syn), S-adenosylmethionine synthetase (isoform I, AdoMet Syn2661 and isoform II, AdoMet Syn605), S-adenosylmethionine decarboxylase (SAMDC), serine hydroxymethyltransferase (SHMT) and N5, N10-methenyltetrahydrofolate cyclohydrolase / N5, N10-methylenetetrahydrofolate dehydrogenase (THFC/THFD) in the pathways of generation and supply of methyl units. These are from a cDNA library of mRNA from a susceptible wheat (Triticum monococcum) (Tm) line 441 epidermis, 24 h after inoculation with powdery mildew fungus (Blumeria graminis f. sp. tritici) (Bgt). Phylogenetic tree cluster analysis and subcellular localization prediction by TargetP revealed that MTHFR, Met Syn, AdoMet Syn605, AdoMet Syn2661, SAMDC, and THFC/THFD may be localized in cytosol; SHMT may be localized in mitochondria. Northern blot analysis indicated that expression of MTHFR, Met Syn, AdoMet Syn2661, AdoMet Syn605 and SAMDC genes was up-regulated by powdery mildew infection, abiotic stresses and treatments with stress signal molecules; expression of SHMT and THFC/THFD was either constitutive or down-regulated. These results suggest a close metabolic link between various stresses and the pathways of generation and supply of methyl units in this wheat.

Rice produces a lot of biomass which is an important trait in increasing grain yield and it is a potential feedstock for bioenergy production. High biomass rice is important to meet the growing demands of grains and biomass for food, fodder and bio-fuel industries. Limited studies have been conducted to determine its response to unfavorable conditions. The main objectives of this study were to determine the response of selected high biomass rice to drought, rainfed and flooded conditions and identify best genotypes that can be grown in unfavorable areas. Two experiments were conducted in summer 2009 to evaluate biomass yield and agronomic traits of selected high biomass genotypes. A greenhouse study had genotypes grown under drought condition - different field capacity (FC) i.e. 100 percent, 75 percent and 50 percent FC, while the field study had rainfed and flooded environments. Most of the genotypes performed well under fully saturated soil conditions but some were less affected by drought. Limited water delayed first tiller emergence and reduced tiller count, rate of tiller production, plant height, rate of increase in height, shoot and root weight, root:shoot (R:S) ratio, percent dry matter (percent DM) and total biomass. The plant height, tiller plant-1, and total biomass at maturity were lower under rainfed conditions and their flowering was delayed compared to flooded conditions. Majority of these traits were correlated with high biomass yield. Genotype 11 which is tall and late maturing produced the highest number of tillers plant-1 and tillers/ 750 cm2 and had the highest biomass yield under both rainfed and flooded conditions. It performed equally well under drought conditions particularly in root and R:S ratio, but genotype 12 was the best in most parameters measured in the greenhouse. Although it was the shortest genotype, it was highest in biomass yield, earliest to tiller, had the highest shoot weight and tiller count, and had the fastest tiller production. The high biomass genotypes like conventional rice were affected by drought and performed better under flooded conditions. However, these two genotypes can produce optimum results under limited availability of water and hence be used for biomass production under stressed environments.

The purpose of this report was to investigate how the abiotic factors (temperature, pH, nutrients, oxygen levels and water content) would affect the decomposition of oil-contaminated soil and how a variance in structured soil would affect the decomposition-rate. A minor field-study was made and soil where structured in five different ways (one was a default pile and was used as a reference). The study took place over 137 days and three samples were taken (start, middle, end) and analyzed for aromatic and aliphatic compounds. The result of this study shows that there is a significant difference between all methods for the aliphatic compounds and no significant difference for the aromatic compounds. The abiotic factors that affect decomposition vary from organism to organism, depending on what type of environment it will function the best. In this type of environment it could be necessary to change temperature interval, nutrient availability or pH to optimize the conditions for the microorganisms. The conclusion of this report is that the structured of the soil-piles will affect decomposition rate, but it is unsure how much. Further research is needed to conclude how the soil should be structured to maximize the decomposition-rate.

The Asteraceae family is frequently used to describe several medicinal plants which contain various phytochemical compounds including phenols, flavonoids and terpenoids. Among the Asteraceae family German chamomile (Matricaria chamomilla L.) and yarrow (Achillea millefolium L.) plants are extant species used in contemporary medicine. These phytochemical compounds have been traditionally used since ancient times in health care systems worldwide as a source of medicines. The use of micropropagation is essential to improve and increase these active compounds via plant tissue culture within a short period of time using the application of key plant growth regulators (PGRs). Furthermore, quantitative and qualitative analysis using high performance liquid chromatography- ultraviolet detector (HPLC-UV) and gas chromatography- flame ionisation detector (GC-FID) of potential medicinal compounds expressed by both chamomile and yarrow are important points. The protocol of in vitro shoots, roots and callus formation of chamomile and yarrow seeds culture were investigated using Murashige and Skoog (MS) medium supplemented with different concentrations of plant growth regulators (PGRs). MS culture medium containing 0.5 mgL-1 IAA and 1.0 mgL-1 of GA3 were found to be the best culture medium for chamomile and yarrow seeds. In this project in vitro and in vivo growth rates of selected plant species were also investigated. In the earlier growth stages yarrow plants were found to grow much quicker than chamomile, while the yield of chamomile flowers was significantly (p ≤ 0.001) more than yarrow flowers. The phenolic, flavonoid and terpenoid compounds content of leaves and flowers of plants produced from both cultures were also studied. HPLC-UV analysis showed that chlorogenic acid, apigenin-7-O-glucoside and luteolin dominated as the main phenol and flavonoid compounds recovered in both in vitro and in vivo chamomile and yarrow cultures. However, GC-FID analysis indicated that farnesene and nerolidol were detected as the main terpenoid compounds present in the two culture conditions used to grow chamomile and yarrow plants. Moreover, this research examines how chamomile and yarrow plants can produce and improve their phytochemical compounds content not only under well-watered conditions but also under drought stress conditions. The main phenol and flavonoid compounds of chlorogenic acid, caffeic acid, apig-7-glucoside, umbelliferon and luteolin were found in chamomile and yarrow varieties grown under both well-watered and drought stress conditions using (HPLC-UV), however farnesene, nerolidol, chamazulene, α-(-)- bisabol and bisabolol oxide A were observed in the plant essential oils (EOs) using Soxhlet extraction and GC-FID analysis. The antibacterial activity of plant EOs was also investigated using disc diffusion and 96 well plates. In vivo chamomile EO showed the highest antibacterial activity against gram-positive and gram-negative bacteria strains. In addition, in vitro yarrow EO showed the greatest effect on the death of bacteria strains.

>Magister Scientiae - MSc / South Africa is one of two countries responsible for the production of approximately 80% of the world’s Zr. The increase in mining activity has detrimental effects on the environment, especially crop plants, as more pollutants are leached into the soil. Consequently, it is necessary to understand how plants respond to this form of abiotic stress. Therefore, this study focused on determining the physiological and biochemical responses of two genotypes of Brassica napus L (Agamax and Garnet) in response to Zr stress. The levels of cell death, lipid peroxidation and ROS were higher in Garnet, whereas the chlorophyll content was higher in Agamax. Furthermore, native PAGE analysis detected seven SOD isoforms and seven APX isoforms in Agamax, compared to 6 SOD isoforms and 7 APX isoforms in Garnet. The results thus indicate that Agamax is tolerant to Zr-induced stress, whereas Garnet is sensitive. An assay for the rapid quantification of Zr within plant samples was subsequently developed, which revealed that Agamax retained the bulk of the Zr within its roots, whereas Garnet translocated most of the Zr to its leaves. The ability of Agamax to sequester Zr in its roots comes forth as one of the mechanisms which confers greater tolerance to Zr-induced stress. As a consequence, our study sought to use the optical, physical and chemical properties of quantum dots to image the uptake and translocation of Zr in B. napus genotypes. ICPOES was also performed to quantify Zr levels in various plant organs. Data from the ICPOES revealed varying patterns of uptake and translocations between Garnet and Agamax. These patterns were similarly shown in IVIS Lumina images, tracing the transport of QD/Zr conjugates. This method ultimately proved to be successful in tracing the uptake of Zr, and could essentially be a useful tool for targeting and imaging a number of other molecules.

N-Acylethanolamines (NAEs) are a class of bioactive lipids, and FAAH is one of the enzymes responsible for degrading NAEs in both plants and animals. in plants, FAAH appears to be closely associated with ABA, a phytohormone which has long been associated with plant stress responses, since the overexpression of FAAH in Arabidopsis results in ABA hypersensitivity. Therefore, it is reasonable to speculate that alterations in FAAH transcript levels will result in altered stress responses in plants. to investigate this hypothesis experiments were carried out in which wild type (WT), FAAH-overexpressing (OE), and T-DNA insertional FAAH knockouts of Arabidopsis (faah) were grown in MS media under stress conditions. the stress conditions tested included chilling stress, heavy metal stress induced by cadmium or copper, nutrient limitations induced by low phosphorus or low nitrogen, salt stress induced with NaCl, and osmotic stress induced with mannitol. the OE plants were consistently hypersensitive to all stress conditions in relation to wild type plants. Inactive FAAH overexpressors did not have the hypersensitivity to the salt and osmotic stress of the active OE plants and were instead tolerant to these stresses. FAAH2 (faah2) knockouts and FAAH 1 and 2 double knockouts (faah 1+2) were based on some root development parameters somewhat more tolerant than WT plants, but more sensitive in terms of shoot growth. Collectively the data suggests that FAAH activity may interact with stress-responsive pathways in plants, perhaps including pathways involving ABA.

Drought (soil water deficit) as a major adverse environmental condition can result in serious reduction in plant growth and crop production. Plants respond and adapt to drought stresses by triggering various signalling pathways leading to physiological, metabolic and developmental changes that may ultimately contribute to enhanced tolerance to the stress. Here, a novel non-coding RNA (ncRNA) involved in plant drought stress tolerance was identified. We showed that increasing the expression of this ncRNA led to enhanced sensitivity during seed germination and seedling growth to the phytohormone abscisic acid. The mutant seedlings are also more sensitive to osmotic stress inhibition of lateral root growth. Consistently, seedlings with enhanced expression of this ncRNA exhibited reduced transiprational water loss and were more drought-tolerant than the wild type. Future analyses of the mechanism for its role in drought tolerance may help us to understand how plant drought tolerance could be further regulated by this novel ncRNA.

Physical characteristics of a site that plant species inhabit may be useful in deriving the range of the species. Current range maps for tree species of the United States were originally developed by Elbert Little. These range maps were based primarily on observations. The purpose of this study was to update Little’s (Little, 1971) range maps of select southern oak species in Mississippi by calculating the topological, soil, and climatic features of sites using a Geographic Information System (GIS) to analyze environmental variables associated with species distributions. Data collected from databases were input into ArcMap and site data extracted using Hawth’s Analyst Tools. Stepwise logistic regression performed with site variables yielded the parameters used in predictive models to generate probability maps for each species across Mississippi. These probability maps demonstrate the potential to efficiently manage forests by giving a more encompassing view of species occurrence.

The Intergovernmental Panel on Climate Change has predicted that there will be increases in precipitation and heat-induced drought events globally. Information on kale response to waterlogging is minimal. The purpose of this project was to identify the response of kale to three treatments of water stress: underwatering, overwatering, and waterlogging. Plant pigments analyzed displayed a varied response to underwatering and overwatering, with concentrations changing with maturity but with reductions and no changes, respectively, at full harvest maturity. Glucosinolate concentrations were also influenced by maturity and increased under waterlogging and underwatering but no differences with overwatering. Overall, water stress to any degree is not ideal for kale during production, but despite yield reductions, underwatering led to increases among phytonutrients, but increases are apparent and do not equate to increased absorption when consumed.