Stream ecosystems and their riparian zones have previously been regarded as two different ecosystems, linked through numerous reciprocal subsidies. Today, ecologists agree that the stream and the riparian zone should be regarded as one system, the stream-riparian ecosystem, which is characterised largely by the subsidies between land and water. The terrestrial subsidies to the stream affect stream-living biota in several ways, some of which are well-known while others less so. The input of wood to the stream from the riparian zone is believed to play an important role in the population dynamics of stream-living fish. In this doctoral thesis, I explore effects of fine stream wood (FW, &lt;10 cm diameter) on wild stream-living young-of-the-year brown trout (Salmo trutta) by reporting and discussing results from laboratory, semi-natural and field experiments. My results show that the local density of drifting prey is higher in the presence of FW than in its absence, and also that young-of-the-year brown trout decrease their diurnal foraging time and prey capture success when FW is added to their habitat. I show that trout decrease their swimming activity in the presence of FW, aggregate in FW bundles, and have lower growth rates than trout without FW access. Also, the degree of sheltering in FW bundles was higher during day than at night in a study performed at low water temperatures; moreover, the presence of an ectothermic nocturnal predator (burbot, Lota lota) did not affect the degree of sheltering in FW bundles by trout. Taken together, my results indicate that young-of-the-year brown trout with access to FW bundles spend considerable amounts of time sheltering in the FW, and by doing so they miss the opportunity for higher growth and foraging rates outside of the shelter. The most probable explanation for this behaviour is that growth is traded off against survival, i.e., the predation risk is higher outside of the shelter. / Stream ecosystems and their riparian zones have previously been regarded as two different ecosystems, linked through numerous reciprocal subsidies. Today, ecologists agree that the stream and the riparian zone should be regarded as one system, the stream-riparian ecosystem, which is characterised largely by the subsidies between land and water. In this doctoral thesis, I explore one such subsidy – the input of fine stream wood (FW) to streams. Wild stream-living young-of-the-year brown trout (Salmo trutta) was chosen as study species. My results show that the local density of drifting prey is higher in the presence of FW than in its absence, and that young-of-the-year brown trout decrease their diurnal foraging time and prey capture success when FW is added to their habitat. I show that trout decrease their activity in the presence of FW, aggregate in FW bundles, and have lower growth rates than trout without FW access. Taken together, my results indicate that young-of-the-year brown trout spend considerable amounts of time in FW bundles, and by doing so they miss the opportunity for higher growth and foraging rates outside of the shelter. The most probable explanation for this behaviour is that growth is traded off against survival. / <p>Artikel 3 publicerades i avhandlingen som manuskript med samma titel.</p>

M.Sc. / Mpumalanga, “the place where the sun rises”, sets the scene for one of the rarest wetland types in South Africa. They are formed on one of the last remnants of the ancient African land surface, contain peat and together with a variety of other pan types make up the Mpumalanga Lakes District. Of these approximately 320 pans, only ±2.3% are reed pans. These endorheic wetlands are unique from other pan types and peatlands in South Africa and support an abundant biodiversity. They perform vital functions such as water storage, filtering out impurities and carbon fixation, which prevents an excess release of CO2 into the atmosphere. There is very little known about these endorheic wetlands and thus they are constantly being threatened by various activities such as agriculture, livestock and mining. The objectives of this study were to determine the spatial and temporal variation of macroinvertebrate community structures of reed pans and the environmental factors, such as water quality, responsible for the maintenance of these structures; to determine the best method for sampling aquatic invertebrates in reed pans; as well as to determine the relationship between aquatic invertebrates and the water, sediment and habitat quality of a reed pan. Together with this the amphibian diversity as well as the occurrence of other biotic components was determined. Four reed pans were assessed during four different seasons over a one year period to account for the different hydrological extremes. Sub-surface water samples were analyzed for their suspended solid content, nutrient levels, metals and chlorophyll-a concentrations as well as in situ water quality parameters. Sediment samples were analyzed for metal concentrations, organic carbon and water content, as well as sediment size distribution. Invertebrates were collected using the following sampling techniques: aquatic light trap, terrestrial light trap, emergent trap, sweep net, plankton net, as well as benthic sampling using an Eckman grab.

M.Sc. / The occurrence of invertebrates in drinking water supplies is a common consumer complaint with studies showing that very few drinking water distribution networks are totally free of organisms. A detailed investigation of different types of metazoan animals in the drinking water supply networks of South Africa has not been undertaken. In limited worldwide studies, invertebrates (mainly Amphipoda, Chironomidae, Cladocera, Copepoda and Ostracoda) have been detected in produced drinking water. In countries that have started monitoring these organisms, the quality of the produced water has improved due to the improved methods of filtering. The occurrence of “worms” (Nematodes and Diptera) and Crustaceans decreases the aesthetic value of the drinking water, and pathogenic organisms, which may also be associated with them, can affect human health. Limited reference works have been compiled during the conducted studies on drinking water distribution networks throughout the world. All fresh water invertebrates have the potential to be passed into the drinking water supply network (Rising mains, pipelines, reservoirs, and consumer taps). There are few complete reference works available for fresh water invertebrates occurring in the fresh water sources and those of Southern Africa. Therefore, there are no reference works regarding fresh water invertebrates that can be used to monitor drinking water supply networks in South Africa. / Prof. J.H.J. van Vuren

Whether active or passive, dispersal accompanied by gene flow shapes the population genetics and evolutionary divergence of species. Indirect methods which use genetic markers have the ability to assess effective dispersal—that which resulted in gene flow. My objective was to see if an aquatic insect and an obligate aquatic invertebrate show similar phylogeographic patterns and genetic uniqueness. Hyalella azteca and Callibaetis americanus were collected from 4-5 springs in each of six basins in the Great Basin of western North America. No dispersal or genetic studies of C. americanus have been conducted to date. However, several studies focusing on mtDNA diversity of H. azteca have revealed a tremendous degree of cryptic diversity in the desert springs of the Great Basin. Nested clade phylogeographical analysis (NCPA), FST values, AMOVA, and Mantel tests were used to examine geographical associations. I also used traditional phylogenetic approaches including maximum parsimony (MP) and likelihood (ML) analyses using cytochrome c oxidase subunit I (COI), 28S, and 16S as genetic markers. The mitochondrial COI sequence divergences in C. americanus were higher than H. azteca COI divergences within springs but lower among springs. FST values were very high in H. azteca reaching near fixation for certain alleles. C. americanus FST values were lower suggesting greater gene flow and, consequently, greater dispersal rates. Even though Mantel tests did not detect significant isolation by distance when evaluating all haplotypes together, nested clade analysis was able to examine smaller networks of related haplotypes and detect significant isolation by distance. Whereas the genetic structure in C. americanus was dominated by restricted gene flow with isolation by distance, H. azteca was characterized more by gradual range expansion followed by fragmentation. Mayflies likely showed more gene flow than amphipods because of their flight capabilities, but movement was still restricted by long distances between isolated springs.

Water hyacinth (Eichhornia crassipes) is a floating non-native plant that has been reoccurring in Lake Chapala, Jalisco, Mexico for more than 100 years. In this research, I explore the effects of water hyacinth on freshwater ecosystems worldwide and specifically on Lake Chapala. In chapter 1, I reviewed studies conducted on water hyacinth worldwide and found that the effects of water hyacinth on water quality are similar but the magnitude of effects is dependent on the percent cover and potentially the spatial configuration of water hyacinth mats. Water hyacinth's effect on aquatic invertebrates, fish, and waterbirds is less predictable and dependent on conditions prior to invasion. In chapter 2, I tested for relationships between percent water hyacinth cover and waterbird abundance, species diversity, community composition, and habitat use. In general, I found a weak positive relationship or no relationship between these variables. In Chapter 3, I monitored habitat use by American Coots (Fulica americana) in a variety of habitats around Lake Chapala. I found that the time spent in water hyacinth positively corresponded to the percent water hyacinth cover and that the time foraging in water hyacinth was positively related to the time spent in water hyacinth. In Chapter 4, I compared invertebrate assemblages in open water to those within and at the edge of water hyacinth mats, emergent vegetation, and submerged trees. I also examined invertebrate assemblages within the roots of water hyacinth plants and compared assemblages between patch and shoreline water hyacinth plants. I found that density and taxonomic richness of water column invertebrates were generally higher in association with water hyacinth, but that mean percent cover of water hyacinth affected the magnitude of differences among habitats and vegetation types. I did not find significant differences in root invertebrate density and taxonomic richness between patch and shoreline water hyacinth plants. In chapter 5, I discuss how water hyacinth affected dissolved oxygen and water transparency on a small, localized scale, but was not the driving factor for seasonal differences. The overall results suggest that water hyacinth had a minimal ecological effect on Lake Chapala during this study. / Ph. D.

Mercury poses significant challenges to human health and fisheries management. Historical industrial practices in Waynesboro, Virginia left portions of the Shenandoah River basin contaminated with mercury and stringent health advisories for fish consumption. I investigated processes affecting the bioaccumulation of mercury in Catostomus commersoni, Ictalurus punctatus, Lepomis auritus, and Micropterus dolomieu by studying food habits, total mercury and methylmercury in common prey items, and bioaccumulation dynamics of methylmercury in the mercury contaminated South River and South Fork of the Shenandoah River and uncontaminated North River. Additionally, I evaluated sexual and seasonal variations of total mercury in M. dolomieu in the South Fork of the Shenandoah River. Algae, aquatic insects, crayfish, detritus, and fish accounted for 75-97% of the diet. Total mercury in aquatic invertebrates and forage fish in contaminated rivers ranged from 66.7-398.3 and 198.0-594.9 ng/g wet weight, while total mercury in aquatic invertebrates and forage fish in the reference river were 4.4 and 29.3 ng/g. Model simulations indicated that dietary pathways accounted for 87% of methylmercury uptake by fish in contaminated rivers, but only 57% in the reference river. Total mercury in M. dolomieu was 19-20% higher in females than males and 14-21% higher during spring than summer and fall. Results of this study indicate that bioenergetics-based bioaccumulation models are valuable tools for evaluating field data, identifying processes critical to contaminant accumulation, and comparing outcomes of alternative management options associated with pollution control, ecosystem management, and/or restoration activities for management guidance prior to costly expenditures. / Master of Science

Graduation date: 2006 / Structure-forming invertebrates belong to a polyphyletic group of primarily sessile and sedentary megafauna that can significantly enhance the complexity of physical habitats. A number of these organisms, including cold-water corals and sponges, are known to be slow growing and vulnerable to physical disturbance. In addition, as filter feeders, these invertebrates can indicate areas of consistently favorable conditions for feeding and growth. This study provides the first quantitative analysis of structure-forming invertebrate communities in many areas along the continental margin of Oregon and Washington. Geological surveys during 1992-95, using the occupied submersible, Delta, sampled an extensive area in this region, primarily on and around rock outcrops. The videos from these surveys were analyzed to inventory and catalog sessile structure-forming invertebrates and to document their associations with geological habitat types. Detailed data on geological substrate, invertebrate diversity, abundance, and density were compiled and analyzed. It was found that geological substrate and depth were reliable indicators of suitable habitat for most species included in the study. Gorgonian corals tended to concentrate in high densities in depths between 200-250m, at the southern edges of submerged rocky banks, and where hard rocky substrate was covered with a thick layer of sediment. Because of recent fishery regulation changes, this information can be used as baseline data for future studies on the effectiveness of closed areas on the recovery of structure-forming invertebrates from disturbance, particularly bottom trawling.

Submitted by Marlene Santos (marlene.bc.ufg@gmail.com) on 2014-10-01T15:50:01Z No. of bitstreams: 2 Tese - Allan Valle Toledo da Silveira - 2013.pdf: 1647435 bytes, checksum: 49a815f9117230a88dd9f9443c919f33 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Approved for entry into archive by Jaqueline Silva (jtas29@gmail.com) on 2014-10-01T16:46:58Z (GMT) No. of bitstreams: 2 Tese - Allan Valle Toledo da Silveira - 2013.pdf: 1647435 bytes, checksum: 49a815f9117230a88dd9f9443c919f33 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) / Made available in DSpace on 2014-10-01T16:46:58Z (GMT). No. of bitstreams: 2 Tese - Allan Valle Toledo da Silveira - 2013.pdf: 1647435 bytes, checksum: 49a815f9117230a88dd9f9443c919f33 (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2013-04-05 / Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES / This thesis evaluated the variables that influence the distribution of aquatic insects, along different spatial scales, aiming to establish a biologic index of water quality based on these organisms. The study area was the Rio dos Bois watershed, one of the most important from Goiás State, due to its vocation for agricultural and cattle production. Thus, the community of aquatic insects occurring in forty two streams was sampled, as well as a series of water physicochemical variables. Surrounding the streams (up to a distance of 200 m), and along the watershed above the sampling units, percentages of land use (agriculture, pasture and native vegetation) were estimated based on LandSat 5/TM satellite images from July 2012. The main results showed that (1) smaller spatial scales seem to provide better estimates of water quality and aquatic insects community than the watershed level scale, being recommended to use habitat integrity indexes (HII); (2) the variance partition held to define the contribution of the spatial processes and environmental variables on the community structure of aquatic insects did not present statistically significant values to corroborate none of the two sets of predictors and (3) only four from the 26 biodiversity metrics studied were enough to compose a multimetric index for the watershed, (% Plecoptera, Ephemeroptera richness, EPT richness and the BMWP/ASPT index). (4) Based on this index, it was possible to classify the streams from the study area as very disturbed (41%), with intermediate impacts (46%) and minimally disturbed (13%). This study may contribute to future studies of biomonitoring and conservation of water resources in the Goiás State and Brazil. / escalas espaciais, na tentativa de estabelecer um índice biológico de qualidade de água baseado nesses organismos. A área de estudo adotada foi a Bacia Hidrográfica do Rio dos Bois, uma das mais importantes do estado de Goiás, devido a sua vocação agropecuária. Desta forma, a comunidade de insetos aquáticos pertencentes a quarenta e dois córregos foi amostrada, bem como uma série de variáveis físico químicas da água . Nos arredores dos córregos (até 200 m de distância), bem como em toda a bacia à montante do local amostrado, porcentagens de classes de uso de solo (agricultura, pecuária e vegetação) foram estimadas a partir de imagens de satélite LandSat 5/TM datadas de julho de 2012. Os principais resultados evidenciam que (1) escalas espaciais menores parecem ser melhores preditores da qualidade da água e das comunidades de insetos aquáticos do que a escala ao nível de bacia, sendo recomendada a utilização de índices de integridade ambiental (IIA); (2) a partição de variância realizada para determinar as contribuições dos processos espaciais e variáveis ambientais na estruturação da comunidade de insetos aquáticos não apresentou valores estatisticamente significativos para corroborar nenhum dos dois conjuntos de preditores e (3) apenas quatro de 26 métricas de biodiversidade estudadas foram satisfatórias para compor um índice multimétrico para a bacia, (% Plecoptera, riqueza de Ephemeroptera, riqueza de EPT e o índice BMWP/ASPT). (4) Baseado neste índice, pôde-se classificar os córregos da área estudada como: muito impactadas (41%), com impactos intermediários (46%) e minimamente impactadas (13%). Acredita-se que este estudo possa contribuir para futuros estudos de biomonitoramento e conservação de recursos hídricos no estado de Goiás e no Brasil.

Taxonomic composition and spatio-temporal variability of macroinvertebrates inhabiting snags were examined from an 8-km segment of the Elm Fork of the Trinity River. Seventy-seven macroinvertebrate taxa were collected from submerged wood during the study. Assemblages were highly variable spatially and temporally, especially among seasons. An ordination of species and environment did not find snag taxa to have striking correlations with many of the selected environmental variables, although there were some trends in flow-mediated species distributions. There were significant seasonal differences in the abundances of some taxa, particularly among the Chironomidae (Diptera). The Tribe Orthocladiini was numerically abundant during the winter, while the Tribes Chironomini and Tanytarsini dominated the summer and autumn. Additionally, this study included a secondary production and microdistribution analysis of a population of the caddisfly Cyrnellus fraternus. Distributions of C. fraternus were restricted to snags, the most stable substratum for retreat building and for resisting periodic high waters. Larvae were not found in the soft sand and mud benthic habitats near submerged wood. The insects were multivoltine with a minimum of three generations per year. Pupae were collected July through September and adults emerged from May through October. The population overwintered as larvae. Estimated annual production was 1,015.4 mg/m2/yr. Mean standing stock biomass was 61.24 mg/m2, the cohort production/biomass ratio was 4.59, and the annual production/biomass rate was 16.58/yr for this population. Standing stock biomass ranged from 1.6 to 349.1 mg/m2 during the year and was significantly higher in autumn and summer than winter. Larvae were more abundant in the lower portions of the study area where flow was reduced for much of the year, than in the upper reaches, characterized by higher current velocities. C. fraternus larvae were found in their highest numbers on snags with dense deposits of silt and sand.

Gli ecosistemi acquatici sono il comparto ambientale finale per molti contaminanti introdotti nell’ambiente, specialmente per quelli persistenti, provenienti da diverse attività antropiche. Gli organismi acquatici sono esposti simultaneamente a differenti classi di composti chimici e, la loro fisiologia può esserne affetta anche da basse concentrazioni ambientali che ne determinano un effetto a cascata drammatico sull’intero ciclo vitale delle stesse. Per identificare gli effetti ecotossicologici si devono scegliere delle variabili di studio che sono sensibili a cambiamenti di esposizione e quindi possono registrare informazioni a differenti livelli di organizzazione biologica (ad es.: comunità, specie, alterazioni cellulari, molecolari). Il presente lavoro ha come scopo di studiare biomarker biochimici e bioindicatori su invertebrati acquatici capaci di rispondere all’effetto dei contaminanti e predirne il rischio di tossicità, requisito fondamentale dell’attuale legislazione comunitaria ambientale. Questo lavoro, nell’ambito della Water Frame Directive (WFD), affronta questa tematica con diversi tipi di approccio per implementare un sistema di monitorizzazione efficiente. Lo SPEAR ad esempio è in grado di diagnosticare la contaminazione di ecosistemi acquatici da pesticidi operando a livello di comunità di invertebrati acquatici. Inoltre si sono presi in considerazione anche biomarker a livello cellulare in bivalvi (Tapes philipphinarum and Mya arenaria): attività enzimatiche coinvolti nelle risposte aerobiche (CCO) e antiossidative (SOD and CAT), risposte genotossicologiche come la frequenza dei micronuclei, e, infine, a livello di organismo, risposte di carattere comportamentale. / Aquatic ecosystems are the final sink for most of contaminants introduced in the environment, especially persistent organic pollutants coming from different human activities. Most of the freshwater and coastal organisms are exposed simultaneously to different classes of chemicals, and their physiology may be affected by toxic chemical even at low environmental concentrations with a cascade event on population dynamics. Identifying ecotoxicological effects requires descriptors that are sensitive to changes in exposure and thus can indicate information at different levels of biological organisation (i.e. communities, sub-individual level). The present work aims to investigate biochemical biomarkers and bioindicators in aquatic invertebrates able to detect biological effects and predict risk of toxicity, with a special focus paid to the requirements of current EU regulation. Therefore, the present work faced on different kinds of approach identified to be efficient tools within the context of the WFD requirements (Water Frame Directive, 2000/60/EC), for investigative and operational monitoring. Work include the SPEAR approach as trait based indicator descriptor of freshwater aquatic macroinvertebrates communities, able to diagnose pesticide contamination in aquatic ecosystems. Further diagnostic approaches in environmental status are included, as assay representing biological responses for different enzymes involved in the aerobic (CCO) and antioxidant responses, (SOD, and CAT), behavioural endpoints, and genotoxicity biomarker associated with micronuclei frequency in bivalve species (Tapes philipphinarum and Mya arenaria).