In this study, it was aimed to identify chickpea (Cicer arietinum) genes or gene fragments expressed upon Ascochyta rabiei infection using a tolerant chickpea cultivar ILC195 and fungal isolates with varying level of pathogenicity. PCR amplification of resistance gene analogs (RGA) and disease related genes, and mRNA differential display reverse transcription (DDRT) were used to get these expressed gene fragments in chickpea. The constitutively or differentially expressed PCR product fragments were cloned and sequenced. Out of nearly 300 clones, 160 sequences (expressed sequence tags, ESTs) could be analyzed and these sequences were disclosed in this study. About 100 of these ESTs were classified according to predicted &ldquo / molecular function&rdquo / , &ldquo / biological process&rdquo / and &ldquo / cellular component&rdquo / . The most common ppredicted functions of the products coded by these ESTs were &ldquo / Protein Fate&rdquo / , &ldquo / Metabolism&rdquo / , &ldquo / Cell Rescue, Defense and Virulence&rdquo / , &ldquo / Transcription&rdquo / , &ldquo / Transport&rdquo / , &ldquo / Energy&rdquo / , and &ldquo / Cell Fate&rdquo / . Six ESTs were subjected to Real-Time quantitative RT-PCR analysis to compare the response of ILC195 infected by one A.rabiei isolate with another resistant chickpea genotype (FLIP84-92C)/A.rabiei pathotype system. Some of these genes were differentially expressed among different chickpea/A.rabiei isolate combinations. Highly upregulated ESTs in all these combinations were a formate dehydrogenase (metabolism and detoxification), a serine carboxypeptidase (protein fate and communication) and a hypothetical protein probably similar to acyl-CoA synthetases. A genetic mapping study was carried out with EST specific primers and two EST markers were assigned in the current chickpea genetic map. However, no genetic linkage of them was detected with known chickpea quantitative trait loci for A.rabiei resistance.

Chenopodium album is considered one of the most important weeds adversely affecting agricultural production due to its highly competitive influence on field crops. Chemical herbicides have increased the efficiency of farming, but recently problems of herbicideresistant weed populations and herbicide residues in soil, water, food products and effects on non-target organisms have increased, consequently, other methods of control of weeds by using specific fungi as herbicides have been suggested. The purpose of this research was to evaluate the biological control of the weed Chenopodium album by the fungus Ascochyta caulina. Some of the factors which control dormancy and germination of Chenopodium album seeds have been investigated to understand better the weed population dynamics. The results showed that seeds from two populations (UK and Libya) differ in their response to factors such as light, chilling, and burying in soil. This could have implications for effective control of the weed in different regions. Two formulations of mycoherbicides (Tween 80 and Gelatine based applications) were tested in the laboratory, and showed promise in reducing growth of the weed, especially the formula of Tween 80. There was extensive shoot fresh and dry weight reduction of inoculated Chenopodium album, as well as reduced root growth. Highest disease severity rates were observed on plants in the first three week of life. A field trial revealed similar results but less disease severity was observed, possibly because of dry weather. However, it was concluded that the fungus Ascochyta caulina is a potentially useful biological control agent but many factors still can be modified in relation to application of the mycoherbicide to increase its efficacy. / Libyan Government

Chenopodium album is considered one of the most important weeds adversely affecting agricultural production due to its highly competitive influence on field crops. Chemical herbicides have increased the efficiency of farming, but recently problems of herbicideresistant weed populations and herbicide residues in soil, water, food products and effects on non-target organisms have increased, consequently, other methods of control of weeds by using specific fungi as herbicides have been suggested. The purpose of this research was to evaluate the biological control of the weed Chenopodium album by the fungus Ascochyta caulina. Some of the factors which control dormancy and germination of Chenopodium album seeds have been investigated to understand better the weed population dynamics. The results showed that seeds from two populations (UK and Libya) differ in their response to factors such as light, chilling, and burying in soil. This could have implications for effective control of the weed in different regions. Two formulations of mycoherbicides (Tween 80 and Gelatine based applications) were tested in the laboratory, and showed promise in reducing growth of the weed, especially the formula of Tween 80. There was extensive shoot fresh and dry weight reduction of inoculated Chenopodium album, as well as reduced root growth. Highest disease severity rates were observed on plants in the first three week of life. A field trial revealed similar results but less disease severity was observed, possibly because of dry weather. However, it was concluded that the fungus Ascochyta caulina is a potentially useful biological control agent but many factors still can be modified in relation to application of the mycoherbicide to increase its efficacy.

Field pea is an important annual crop due to its contribution to soil fertility and other rotational benefits. However, weeds and ascochyta blight limit pea yield, particularly in organic systems. Leafed and semi-leafless pea types differ in lodging resistance, and may affect weeds and disease through differences in canopy light penetration and air flow. Mixtures of the two leaf types may improve weed and disease suppression and yield compared with monocultures of the same cultivars. To test this hypothesis, replicated field experiments were conducted under organic and conventional management in Saskatoon and Vonda, SK, in 2011 and 2012. Mixtures of a leafed and semi-leafless cultivar, CDC Sonata and CDC Dakota, were sown in ratios of 0:100, 25:75, 50:50, 75:25, and 100:0 leafed to semi-leafless pea, at target seeding rates of 88 and 132 plants m-2. Conventionally managed plots were inoculated with ascochyta blight-infested pea straw and received overhead irrigation to encourage disease. Mixtures of 50% or more semi-leafless pea adopted the greater lodging resistance and weed suppression of the semi-leafless cultivar. Mixtures comprised of 25% leafed and 75% semi-leafless pea increased both seed and biomass yield compared with either cultivar grown alone. Yield enhancement was attributed to the leafed cultivar, whose seed yield was 76% higher in mixture than expected based on monoculture yield. Ascochyta blight epidemics were of moderate severity, and leafed and semi-leafless monocultures reached 36 and 43% necrosis in 2011, and 33 and 38% necrosis in 2012, respectively. The disease reaction of mixtures fell between the two component cultivars. At disease onset in 2012, lower light interception and shorter moisture durations coincided with the lower ascochyta blight severity of leafed monocultures. In 2011 and the later phase of the 2012 epidemic, disease severity was negatively associated with vine length, and positively associated with number of nodes and tissue senescence. Despite the advantages of leafed and semi-leafless pea mixtures, the limited selection of leafed cultivars impedes adoption of this technique by growers. For pea breeders, developing mixtures of pea lines isogenic for leaf type may increase yield compared with single cultivars.

Research objective and experimental tasks. The study was designed to explore the incidence and severity of root and foot rots and ascochyta blight in field pea crops and to identify the measures and practices for the prevention and control of the diseases caused by the pathogens of Ascochyta complex. Experimental tasks: - To identify the susceptibility of various field pea varieties to root and foot rots and ascochyta blight under different agro-ecological conditions. - To establish the effect of meteorological factors on the severity of root and foot rots and ascochyta blight in field pea crops. - To determine the frequency of detection of pathogens of Ascochyta complex on various pea varieties. - To estimate the feasibility of control of the diseases caused by the pathogens of Ascochyta complex using seed treatment and fungicide application. - To assess the impact of seed treatment and fungicide application on field pea productivity and yield components. - To study the possible side-effect of the chemical seed treatment on the microflora of pea rhizosphere and soil. / Tyrimų tikslas ir uždaviniai. Tyrimais siekta ištirti šaknų, pašaknio puvinių ir askochitozės išplitimą bei žalingumą sėjamojo žirnio pasėliuose, nustatyti Ascochyta komplekso patogenų sukeliamų ligų prevencijos ir kontrolės priemones. Tyrimų uždaviniai: - Nustatyti įvairių sėjamojo žirnio veislių jautrumą šaknų, pašaknio puviniams ir askochitozei skirtingomis agroekologinėmis sąlygomis. - Nustatyti meteorologinių faktorių įtaką šaknų, pašaknio puvinių ir askochitozės intensyvumui žirniuose. - Nustatyti Ascochyta komplekso patogenų aptikimo dažnį ant įvairių veislių žirnių. - Įvertinti Ascochyta komplekso patogenų sukeliamų ligų kontrolės galimybę naudojant beicus ir fungicidus. - Įvertinti beicų ir fungicidų įtaką žirnių derlingumui ir derliaus komponentams. - Ištirti galimą cheminių beicų šalutinį poveikį žirnių rizosferos bei dirvožemio mikroflorai.

The aim of this study was to gain insight into the nature of resistance genes and mechanisms of resistance present in different ascochyta blight (AB) resistant genotypes of lentil to efficiently select non-allelic AB resistance genes mediating different mechanisms of resistance for gene pyramiding. Recombinant inbred lines (RILs) from all possible crosses among AB resistant Lens culinaris genotypes CDC Robin, 964a-46, ILL 7537 and ILL 1704 were subjected to allelism tests. Efforts were also made to understand the genetics of resistance in the L. ervoides accession L-01-827A. LR-18, a RIL population from the cross CDC Robin × 964a-46 was subjected to quantitative trait loci (QTL) mapping using a comprehensive genetic linkage map previously developed from polymorphic SNPs, SSRs and phenotypic markers. Results of allelism tests suggested that genes conditioning resistance to ascochyta blight in all lentil genotypes were non-allelic. Two complementary recessive resistance genes in L-01-827A were detected. QTL analysis indicated that CDC Robin and 964a-46 were different at two AB resistance QTLs. Histological tests suggested that cell death inhibition in CDC Robin, and reduced colonization of epidermal cells in 964a-46 might be the mechanisms of resistance in these genotypes. Comparing the expression of key genes in the salicylic acid (SA) and jasmonic acid (JA) signaling pathways of CDC Robin and 964a-46 suggested that the SA pathway was strongly triggered in 964a-46. However, the JA pathway was triggered in both, but at a lower expression level in 964a-46 than in CDC Robin. RNA-seq analysis revealed a number of candidate defense genes differentially expressed among genotypes with hypothetical actions in different layers of the plant defense machinery. The expression levels of the six candidate defense genes measured by quantitative real-time PCR analysis was correlated with those of RNA-seq. In conclusion, 964a-46 and CDC Robin mediated resistance to ascochyta blight through different resistant mechanisms, making them ideal candidates for resistance gene pyramiding. Gene pyramiding can be accelerated using closely linked markers to CDC Robin and 964a-46 resistance genes identified through QTL analysis.

Chickpea (Cicer arietinum L.) was recently introduced to the Canadian prairies, a region which has a short growing season in which crop maturation often occurs under cool and wet conditions. To improve the yield of chickpea, crop duration must closely match the available growing season. The objectives of this study were to: i) examine the days to flowering of diverse chickpea accessions grown in either long or short-days; ii) examine the days to flowering of selected chickpea accessions grown in a range of thermal regimes combined with either long or short days and to examine the interaction between photoperiod and day and night temperatures on crop duration; iii) determine the timing and duration of the photoperiod-sensitive phase in selected chickpea accessions, and vi) determine the genetic basis of the association between flowering time and reaction to ascochyta blight in chickpea. A wide variation was observed in chickpea accessions for their response to flowering under long (16/8 hours day /night) and short days (10/14 hours day/night). Earlier flowering was observed under long photoperiod regimes compared with the short photoperiod regimes. Variability was detected among chickpea accessions for their flowering responses when different temperatures were combined with different photoperiods. Earlier flowering was observed under long days (16/8 hours day/night) coupled with high to moderate temperature regimes (24/16 ºC and 20/12 ºC, day and night respectively) compared to short-days (10/14 hours day and night) and moderate to low temperature regimes (20/12 ºC and 16/8 ºC day and night, respectively). Those chickpea accessions such as ICC 6821 and ICCV 96029 which originated from the lower latitudes of Ethiopia and India, respectively, flowered earlier compared to accessions such as CDC Corinne and CDC Frontier which originated from the higher latitudes and cooler temperate environments of western Canada. Photoperiod sensitivity phases were detected in chickpea accessions adapted to the cold environments of western Canada, whereas no photoperiod sensitivity phase was identified in the extra-early flowering cultivar ICCV 96029. The duration of the photoperiod sensitive phase in the chickpea accessions was longer under short days compared to long days. Field and growth chamber evaluation of a chickpea RIL population (CP-RIL-1) revealed the presence of variability among the lines and the two parents for their days to flowering and level of resistance to ascochyta blight. Broad sense heritability across different site-years for days to flower 0.45 to 0.78, plant height 0.48 to 0.78, ascochyta blight resistance 0.14 to 0.68, days to maturity 0.26, photoperiod sensitivity 0.83 and nodes number of first flowering 0.37 to 0.75 were estimated. Days to flower and photoperiod sensitivity were significantly r = -0.21 to -0.58 (P ≤ 0.05 to 0.001) and -0.28 to -0.41 (P ≤ 0.01 to 0.001), respectively and negatively correlated with ascochyta blight resistance in the CP-RIL-1 population. A genetic linkage map consisting of eight linkage groups was developed using 349 SNP markers. Seven QTLs were identified for days to flowering under growth chamber and field conditions on chromosomes 3, 5, 6 and 8 each and 3 QTLs on chromosome 4. The total phenotypic variation explained by QTLs for days to flowering ranged from 7 to 44%. Two QTLs for days to maturity were identified on chromosomes 3 and 8. Three QTLs, one each on chromosomes 3, 4 and 5 were identified for photoperiod sensitivity. The total phenotypic variation explained by each QTL for photoperiod sensitivity ranged from 7 to 41%. A total of three QTL for node of first flowering, one on chromosomes 3 and 8 each, and two on chromosome 4 were identified. The two QTL on chromosome 4 explained total phenotypic variations of 11 and 32%, respectively. Ten QTLs distributed across all chromosomes, except chromosomes 2 and 5, were identified for ascochyta blight resistance. The phenotypic variability explained by each QTL for ascochyta blight resistance ranged from 7 to 17%. The molecular markers associated with these QTLs have potential for use in chickpea breeding.

Chickpea (Cicer arietinum L.) production on the semi-arid Canadian Prairies is challenging due to a short growing season and low and variable moisture. The current recommended chickpea population density of 44 plants m-2 is based on preliminary studies and a narrow range of 20 to 50 plants m-2. The aims of this study were to i) determine optimum population density of varying chickpea canopy types, i.e., leaf type and growth habit, by investigating seed yield responses at 30 to 85 plants m-2 and ii) identify desirable parental traits for breeding programs by assessing growth and yield parameter responses to varying leaf types and growth habits at a range of population densities. Field experiments were conducted from 2002 to 2005. Canopy measurements and calculated variables included light interception, biomass, growth rate, seed yield, harvest index, ascochyta blight severity and radiation- and water use efficiencies. The plant density which produced the highest seed yield when averaged over years for each location for each treatment revealed that a plant density of at least 55 plants m-2 produced a 23% to 49% seed yield increase above that of the currently recommended plant density. This indicates that a higher seed yield average over the long term in spite of periodic low seed yield episodes will be more profitable to producers. Increasing plant density increased lowest pod height significantly in all except one location-year but did not explicitly increase ascochyta blight severity or decrease individual seed size. This suggests that increasing the recommended chickpea plant density on the Canadian Prairies will increase seed yield but would neither negatively impact individual seed size nor ascochyta blight severity, especially, when combined with good agronomic practices. Fern-leaved cultivars had significantly higher maximum intercepted light (62 to 91%), seed yield (136 to 369 g m-2), harvest index (0.33 to 0.53), yield-based water use efficiency (0.56 to 1.06 g m-2 mm-1) and lower ascochyta blight severity (3 to 27%) than the unifoliate cultivars in all location-years. The fern-leaved cultivars also tended to show significantly higher cumulative intercepted radiation (221 to 419 MJ m-2) and biomass (306 to 824 g m-2) but leaf type showed no consistent effect on radiation use efficiency. Cultivars with bushy growth habit generally performed better regarding maximum intercepted light (62 to 90%), cumulative intercepted radiation (233 to 421 MJ m-2), biomass (314 to 854 MJ m-2), seed yield (120 to 370 g m-2), harvest index (0.37 to 0.50), yield-based water use efficiency (0.56 to 1.06 g m-2 mm-1) and ascochyta blight severity (7 to 36%) than the erect cultivars. The overall performance of the spreading cultivar was generally intermediate between the bushy and erect cultivars except for ascochyta blight severity where the spreading cultivar exhibited significantly lower disease severity (3 to 36%). Radiation use efficiency was generally not influenced by growth habit. Increasing plant population density generally increased intercepted light, biomass and cumulative intercepted radiation on each sampling day after seeding resulting in a general increase in seed yield. Harvest index, however, remained constant and ascochyta blight severity was generally stable but radiation use efficiency decreased with increasing population density. Chickpea cultivars with fern leaves and bushy growth habit at higher than currently recommended population densities would best utilize the limited resources of the short-season Canadian prairie environment to maximize and stabilize seed yield.

Chickpea (Cicer arietinum L.) production on the semi-arid Canadian Prairies is challenging due to a short growing season and low and variable moisture. The current recommended chickpea population density of 44 plants m-2 is based on preliminary studies and a narrow range of 20 to 50 plants m-2. The aims of this study were to i) determine optimum population density of varying chickpea canopy types, i.e., leaf type and growth habit, by investigating seed yield responses at 30 to 85 plants m-2 and ii) identify desirable parental traits for breeding programs by assessing growth and yield parameter responses to varying leaf types and growth habits at a range of population densities. Field experiments were conducted from 2002 to 2005. Canopy measurements and calculated variables included light interception, biomass, growth rate, seed yield, harvest index, ascochyta blight severity and radiation- and water use efficiencies. The plant density which produced the highest seed yield when averaged over years for each location for each treatment revealed that a plant density of at least 55 plants m-2 produced a 23% to 49% seed yield increase above that of the currently recommended plant density. This indicates that a higher seed yield average over the long term in spite of periodic low seed yield episodes will be more profitable to producers. Increasing plant density increased lowest pod height significantly in all except one location-year but did not explicitly increase ascochyta blight severity or decrease individual seed size. This suggests that increasing the recommended chickpea plant density on the Canadian Prairies will increase seed yield but would neither negatively impact individual seed size nor ascochyta blight severity, especially, when combined with good agronomic practices. Fern-leaved cultivars had significantly higher maximum intercepted light (62 to 91%), seed yield (136 to 369 g m-2), harvest index (0.33 to 0.53), yield-based water use efficiency (0.56 to 1.06 g m-2 mm-1) and lower ascochyta blight severity (3 to 27%) than the unifoliate cultivars in all location-years. The fern-leaved cultivars also tended to show significantly higher cumulative intercepted radiation (221 to 419 MJ m-2) and biomass (306 to 824 g m-2) but leaf type showed no consistent effect on radiation use efficiency. Cultivars with bushy growth habit generally performed better regarding maximum intercepted light (62 to 90%), cumulative intercepted radiation (233 to 421 MJ m-2), biomass (314 to 854 MJ m-2), seed yield (120 to 370 g m-2), harvest index (0.37 to 0.50), yield-based water use efficiency (0.56 to 1.06 g m-2 mm-1) and ascochyta blight severity (7 to 36%) than the erect cultivars. The overall performance of the spreading cultivar was generally intermediate between the bushy and erect cultivars except for ascochyta blight severity where the spreading cultivar exhibited significantly lower disease severity (3 to 36%). Radiation use efficiency was generally not influenced by growth habit. Increasing plant population density generally increased intercepted light, biomass and cumulative intercepted radiation on each sampling day after seeding resulting in a general increase in seed yield. Harvest index, however, remained constant and ascochyta blight severity was generally stable but radiation use efficiency decreased with increasing population density. Chickpea cultivars with fern leaves and bushy growth habit at higher than currently recommended population densities would best utilize the limited resources of the short-season Canadian prairie environment to maximize and stabilize seed yield.