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  • About
  • The Global ETD Search service is a free service for researchers to find electronic theses and dissertations. This service is provided by the Networked Digital Library of Theses and Dissertations.
    Our metadata is collected from universities around the world. If you manage a university/consortium/country archive and want to be added, details can be found on the NDLTD website.
1

Biochemical diversity of some bacterial haloalcohol dehalogenases

Cotton, Andrew W. January 2001 (has links)
No description available.
2

Characterization, host bioassay, and in vitro culture of indigenous entompathogenic nematodes and their bacterial symbionts

Ngoma, Lubanza 09 April 2009 (has links)
The prevailing use of chemical pesticides has generated several problems including insecticide resistance, outbreak of secondary pests, safety risks for humans and domestic animals, contamination of ground water and decrease in biodiversity among other environmental concerns (Webster, 1982). These problems and the nonsustainability of control programs based mainly on conventional insecticides have stimulated increased interest in the development and implementation of costeffective, environmentally safe alternatives to chemical pesticides for insect pest control. One of the most promising strategies to help minimize dependence on chemical pesticides has been the recent application of entomopathogenic nematodes (EPNs) as biocontrol agents. EPNs in the families Steinernematidae and Heterorhabdidae have been shown to have considerable potential as biological control agents. As a natural process, biological control has the potential to play an important role in the suppression of field crop pests in agriculture. EPNs as biocontrol agents have the following advantages: high virulence, safety to non target organisms, ability to search for hosts, high efficacy in favourable habitats, high reproductive potential, ease of mass production, ease of application (Ferron & Deguine, 1996). To isolate the EPNs in South African soil, 200 soil samples were randomly collected from 5 locations in the agricultural research council (ARC) Pretoria, Gauteng province in April 2006; and 5 locations in Brits, North West province in March, 2006. At the different collection sites, soil samples were obtained from soils associated with various types of vegetation. The nematodes were collected from sandy soil by the insect-baiting technique and maintained successfully in vivo for 12 months on Galleria mellonella (G. mellonella), 4 months on Tenebrio molitor (T.molitor); 2 months Pupae and in vitro (lipid agar) for 2 weeks in the laboratory. Out of a total of 200 soil samples that were baited, 2 were found to be positive for EPNs.EPNs. IV In addition to completing Koch’s postulates, the colour of cadavers infected by the putative EPNs were also used as a diagnostic characteristic for categorizing the nematode isolates. Characterization and identification of the EPN isolates were based on morphological characters, as well as on a molecular marker (18S rDNA). On the basis of the morphological and molecular data that was obtained both of the EPNs isolates were placed in the family Heterorhabdidae: Heterorhabditis bacteriophora (H. bacteriophora) and Heterorhabditis zealandica (H. zealandica). Also from the phylogenetic trees generated from the 18S rDNA sequence, the indigenous putative H. bacteriophora was shown to be closely related to H. bacteriophora (accession number EF690469) and indigenous putative H. zealandica to H. zealandica (accession number AY321481). The two EPNs were found associated with Gram negative rod-shaped bacteria. The bacterial symbionts of the two isolates were isolated and a region of the 16S rDNA gene was sequenced. National Center for Biotechnology Information (NCBI-BLAST) results of the 16S rDNA sequence obtained showed the endosybiotic bacteria to be Photorhabdus luminescens laumondii (P. laumondii) (H. bacteriophora) and Photorhabdus sp (H. zealandica). Results of the tree showed that isolates from H. bacteriophora appeared to be closely related to P. luminescens subsp laumondii strain TT01 Ay 278646. The isolates from H. zealandica appeared to be most closely related to Photorhabdus sp Accession number: Q 614 Ay 216500). Bioassays were used to determine the infectivity of the two EPNs. In this experiment different infective juvenile (IJs) concentrations (5, 10, 25, 50, 100,200 400 and 500) of the two EPNs were applied per G. mellonella; T. molitor larva and pupae. The bioassay was carried out in two parts. In the first part, mortality data was collected for H. bacteriophora and H. zealandica. The results showed that the degree of susceptibility of G. mellonella, T. molitor larvae and pupae to each nematode species was different. When 24 h post-exposure mortality data for larvae exposed to the IJs of H. bacteriophora and H. zealandica were analyzed, ANOVA showed no differences V in mortality between insects exposed to different H. bacteriophora IJ doses (Fig: 8.1 ABC). However, there were significant differences in mortality between insects exposed to different IJ doses of H. zealandica such as 5 and 500 IJs/insect (Fig: 8.2 ABC) Therefore, no differences were noted when mortality data was compared between IJ doses at both 72 h and 96 h following IJ application to the insects. The highest susceptibility was observed with G. mellonella followed by T. molitor pupae and then T. molitor larvae. According to Caroli et al., (1996), the total mortality of insect such as G. mellonella and other lepidopterans, was reached within 24-72 h of exposure to nematodes at concentrations such as those tested here. In this study similar results were observed with high concentration of nematodes (100, 200 and 500). In the second part of the dose response bioassay, the number of progeny IJs emerging from EPN-infected cadavers was determined for all two EPNs. The results indicate that IJ progeny production differed among the three insect hosts used, the IJ doses they were exposed to, as well as the EPN species (Figs 8.3 & 8.4). The highest number of emerged IJs of H. zealandica was produced by G. mellonella (mean ± SEM: 220500 ± 133933 IJs), followed by T. molitor larvae (mean ± SEM: 152133 ± 45466 IJs) and the lowest then T. molitor pupae (mean ± SEM: 103366 ± 56933 IJs).
3

Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica / Community study of the of Burkholderia diazotrophic bacteria in association with sugarcane and description of Burkholderia silvatlantica

Perin, Liamara 15 February 2007 (has links)
Made available in DSpace on 2016-04-26T19:39:29Z (GMT). No. of bitstreams: 1 2007- Liamara Perin.pdf: 5126010 bytes, checksum: 0973e83f604e8d397ec95ef00c19da99 (MD5) Previous issue date: 2007-02-15 / Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico / The sugarcane crop in Brazil occupies almost six million hectares and it is economically important for the generation of jobs and energy production. Among the Poaceas species, it is the crop that receives more contributions from the biological nitrogen fixation, however until this moment it is unknown what organisms are responsible for the best results observed. Innumerable genuses of diazotrophic bacteria were found in association with sugarcane, among them the genus Burkholderia. However little is known about this genus in association with sugarcane. The objective of this study was to isolate and to characterize diazotrophic Burkholderia bacteria in association with sugarcane, and to describe a new species of diazotrophic Burkholderia bacteria. For that, samples of plants were collected in four crop areas, in different Brazilian states, for counting and isolating the bacteria community using the culture medias LGI and JMV. The isolates were characterized physiological, morphologically and molecularly. Sixty-four Burkholderia diazotrophic isolates were gotten that presented versatile metabolism, and the majority differing from the analyzed species patterns. Only five isolates were identified by the ARDRA technique, two belonging to B. tropica species and three to B. unamae. A big group, with 32 isolates, presented the same restriction profile by the ARDRA technique and differed from the analyzed species. The sequencing of the 16S rDNA region of two of these isolates showed that they don t belong to the already described species. This group, from sugarcane plants together with similar maize and pineapple isolates, was described as a new species named B. silvatlantica. The characterization of this new Burkholderia specie was confirmed by the hybridization DNA: DNA technique, presenting only 30% of similarity with the closest species, and the sequencing of the 16S rDNA region. B. Silvatlantica fixed nitrogen in microaerophilic conditions, and it had no capacity of inorganic phosphate solubilization, it did not produce vegetal hormones and had no nodulation capacity in leguminous. These results confirmed that Burkholderia is a rich genus in diazotrophics species and colonize different habitats. / A cultura da cana-de-a??car no Brasil ocupa mais de seis milh?es de hectares sendo importante economicamente pela gera??o de empregos e bastante promissora para a produ??o de energia. Dentre as Poaceas (gram?neas), ? a cultura que mais recebe contribui??es da fixa??o biol?gica de nitrog?nio, por?m ainda n?o se sabe ou n?o se conhece qual ou quais organismos s?o respons?veis pelos melhores resultados observados. In?meros g?neros de bact?rias diazotr?ficas foram encontrados em associa??o com cana-de-a??car, dentre eles o g?nero Burkholderia, at? o momento pouco estudado em associa??o com esta cultura. O objetivo deste estudo foi isolar e caracterizar bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descrever uma nova esp?cie de bact?ria diazotr?fica do g?nero Burkholderia. Para tal, foram coletadas amostras de plantas em canaviais de quatro estados brasileiros para contagem e isolamento da comunidade de bact?rias utilizando os meios de cultura LGI e JMV. Os isolados foram caracterizados fisiologicamente, morfologicamente e molecularmente. Foram obtidos 64 isolados diazotr?ficos do g?nero Burkholderia, que apresentaram metabolismo vers?til e diferiram dos padr?es das esp?cies analisadas. Apenas cinco isolados foram identificados pela t?cnica de ARDRA, dois pertenceram a esp?cie B. tropica e tr?s a B. unamae. Um grande grupo, com 32 isolados, apresentou mesmo perfil de restri??o pela t?cnica de ARDRA e diferiu das esp?cies analisadas. O sequ?nciamento da regi?o 16S rDNA de dois destes isolados mostrou que eles n?o pertencem ?s esp?cies j? descritas. Este grupo obtido de plantas de cana-de-a??car, juntamente com isolados similares, obtidos de milho e abacaxi, foi descrito como uma nova esp?cie de nome B. silvatlantica. A nova esp?cie de Burkholderia foi confirmada pelos experimentos de hibridiza??o DNA:DNA, com apenas 30% de similaridade com a esp?cie mais pr?xima. B. silvatlantica fixou nitrog?nio em condi??es microaerof?licas, n?o apresentou capacidade de solubiliza??o de fosfato inorg?nico, n?o produziu horm?nios vegetais e n?o apresentou capacidade de nodula??o em leguminosas. Estes resultados confirmaram que o g?nero Burkholderia ? rico em esp?cies diazotr?ficas e est?o presentes em diferentes habitats.

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