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Biochemical diversity of some bacterial haloalcohol dehalogenasesCotton, Andrew W. January 2001 (has links)
No description available.
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Characterization, host bioassay, and in vitro culture of indigenous entompathogenic nematodes and their bacterial symbiontsNgoma, Lubanza 09 April 2009 (has links)
The prevailing use of chemical pesticides has generated several problems including
insecticide resistance, outbreak of secondary pests, safety risks for humans and
domestic animals, contamination of ground water and decrease in biodiversity among
other environmental concerns (Webster, 1982). These problems and the nonsustainability
of control programs based mainly on conventional insecticides have
stimulated increased interest in the development and implementation of costeffective,
environmentally safe alternatives to chemical pesticides for insect pest
control. One of the most promising strategies to help minimize dependence on
chemical pesticides has been the recent application of entomopathogenic nematodes
(EPNs) as biocontrol agents. EPNs in the families Steinernematidae and
Heterorhabdidae have been shown to have considerable potential as biological control
agents. As a natural process, biological control has the potential to play an important
role in the suppression of field crop pests in agriculture. EPNs as biocontrol agents
have the following advantages: high virulence, safety to non target organisms, ability
to search for hosts, high efficacy in favourable habitats, high reproductive potential,
ease of mass production, ease of application (Ferron & Deguine, 1996).
To isolate the EPNs in South African soil, 200 soil samples were randomly collected
from 5 locations in the agricultural research council (ARC) Pretoria, Gauteng
province in April 2006; and 5 locations in Brits, North West province in March,
2006. At the different collection sites, soil samples were obtained from soils
associated with various types of vegetation. The nematodes were collected from
sandy soil by the insect-baiting technique and maintained successfully in vivo for 12
months on Galleria mellonella (G. mellonella), 4 months on Tenebrio molitor (T.molitor); 2 months Pupae and in vitro (lipid agar) for 2 weeks in the laboratory. Out
of a total of 200 soil samples that were baited, 2 were found to be positive for EPNs.EPNs.
IV
In addition to completing Koch’s postulates, the colour of cadavers infected by the
putative EPNs were also used as a diagnostic characteristic for categorizing the
nematode isolates. Characterization and identification of the EPN isolates were based
on morphological characters, as well as on a molecular marker (18S rDNA).
On the basis of the morphological and molecular data that was obtained both of the
EPNs isolates were placed in the family Heterorhabdidae: Heterorhabditis
bacteriophora (H. bacteriophora) and Heterorhabditis zealandica (H. zealandica).
Also from the phylogenetic trees generated from the 18S rDNA sequence, the
indigenous putative H. bacteriophora was shown to be closely related to H.
bacteriophora (accession number EF690469) and indigenous putative H. zealandica
to H. zealandica (accession number AY321481). The two EPNs were found
associated with Gram negative rod-shaped bacteria. The bacterial symbionts of the
two isolates were isolated and a region of the 16S rDNA gene was sequenced.
National Center for Biotechnology Information (NCBI-BLAST) results of the 16S
rDNA sequence obtained showed the endosybiotic bacteria to be Photorhabdus
luminescens laumondii (P. laumondii) (H. bacteriophora) and Photorhabdus sp (H.
zealandica). Results of the tree showed that isolates from H. bacteriophora appeared
to be closely related to P. luminescens subsp laumondii strain TT01 Ay 278646. The
isolates from H. zealandica appeared to be most closely related to Photorhabdus sp Accession number: Q 614 Ay 216500).
Bioassays were used to determine the infectivity of the two EPNs. In this experiment
different infective juvenile (IJs) concentrations (5, 10, 25, 50, 100,200 400 and 500)
of the two EPNs were applied per G. mellonella; T. molitor larva and pupae. The
bioassay was carried out in two parts. In the first part, mortality data was collected for
H. bacteriophora and H. zealandica. The results showed that the degree of
susceptibility of G. mellonella, T. molitor larvae and pupae to each nematode species
was different. When 24 h post-exposure mortality data for larvae exposed to the IJs of
H. bacteriophora and H. zealandica were analyzed, ANOVA showed no differences
V
in mortality between insects exposed to different H. bacteriophora IJ doses (Fig: 8.1
ABC). However, there were significant differences in mortality between insects
exposed to different IJ doses of H. zealandica such as 5 and 500 IJs/insect (Fig: 8.2
ABC) Therefore, no differences were noted when mortality data was compared
between IJ doses at both 72 h and 96 h following IJ application to the insects. The
highest susceptibility was observed with G. mellonella followed by T. molitor pupae
and then T. molitor larvae. According to Caroli et al., (1996), the total mortality of
insect such as G. mellonella and other lepidopterans, was reached within 24-72 h of
exposure to nematodes at concentrations such as those tested here. In this study
similar results were observed with high concentration of nematodes (100, 200 and
500). In the second part of the dose response bioassay, the number of progeny IJs
emerging from EPN-infected cadavers was determined for all two EPNs.
The results indicate that IJ progeny production differed among the three insect hosts
used, the IJ doses they were exposed to, as well as the EPN species (Figs 8.3 & 8.4).
The highest number of emerged IJs of H. zealandica was produced by G. mellonella
(mean ± SEM: 220500 ± 133933 IJs), followed by T. molitor larvae (mean ± SEM:
152133 ± 45466 IJs) and the lowest then T. molitor pupae (mean ± SEM: 103366 ± 56933 IJs).
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Estudo da comunidade de bact?rias diazotr?ficas do g?nero Burkholderia em associa??o com cana-de-a??car e descri??o de Burkholderia silvatlantica / Community study of the of Burkholderia diazotrophic bacteria in association with sugarcane and description of Burkholderia silvatlanticaPerin, Liamara 15 February 2007 (has links)
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Previous issue date: 2007-02-15 / Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico / The sugarcane crop in Brazil occupies almost six million hectares and it is economically
important for the generation of jobs and energy production. Among the Poaceas species, it is
the crop that receives more contributions from the biological nitrogen fixation, however until
this moment it is unknown what organisms are responsible for the best results observed.
Innumerable genuses of diazotrophic bacteria were found in association with sugarcane,
among them the genus Burkholderia. However little is known about this genus in association
with sugarcane. The objective of this study was to isolate and to characterize diazotrophic
Burkholderia bacteria in association with sugarcane, and to describe a new species of
diazotrophic Burkholderia bacteria. For that, samples of plants were collected in four crop
areas, in different Brazilian states, for counting and isolating the bacteria community using the
culture medias LGI and JMV. The isolates were characterized physiological, morphologically
and molecularly. Sixty-four Burkholderia diazotrophic isolates were gotten that presented
versatile metabolism, and the majority differing from the analyzed species patterns. Only five
isolates were identified by the ARDRA technique, two belonging to B. tropica species and
three to B. unamae. A big group, with 32 isolates, presented the same restriction profile by the
ARDRA technique and differed from the analyzed species. The sequencing of the 16S rDNA
region of two of these isolates showed that they don t belong to the already described species.
This group, from sugarcane plants together with similar maize and pineapple isolates, was
described as a new species named B. silvatlantica. The characterization of this new
Burkholderia specie was confirmed by the hybridization DNA: DNA technique, presenting
only 30% of similarity with the closest species, and the sequencing of the 16S rDNA region.
B. Silvatlantica fixed nitrogen in microaerophilic conditions, and it had no capacity of
inorganic phosphate solubilization, it did not produce vegetal hormones and had no
nodulation capacity in leguminous. These results confirmed that Burkholderia is a rich genus
in diazotrophics species and colonize different habitats. / A cultura da cana-de-a??car no Brasil ocupa mais de seis milh?es de hectares sendo
importante economicamente pela gera??o de empregos e bastante promissora para a produ??o
de energia. Dentre as Poaceas (gram?neas), ? a cultura que mais recebe contribui??es da
fixa??o biol?gica de nitrog?nio, por?m ainda n?o se sabe ou n?o se conhece qual ou quais
organismos s?o respons?veis pelos melhores resultados observados. In?meros g?neros de
bact?rias diazotr?ficas foram encontrados em associa??o com cana-de-a??car, dentre eles o
g?nero Burkholderia, at? o momento pouco estudado em associa??o com esta cultura. O
objetivo deste estudo foi isolar e caracterizar bact?rias diazotr?ficas do g?nero Burkholderia
em associa??o com cana-de-a??car e descrever uma nova esp?cie de bact?ria diazotr?fica do
g?nero Burkholderia. Para tal, foram coletadas amostras de plantas em canaviais de quatro
estados brasileiros para contagem e isolamento da comunidade de bact?rias utilizando os
meios de cultura LGI e JMV. Os isolados foram caracterizados fisiologicamente,
morfologicamente e molecularmente. Foram obtidos 64 isolados diazotr?ficos do g?nero
Burkholderia, que apresentaram metabolismo vers?til e diferiram dos padr?es das esp?cies
analisadas. Apenas cinco isolados foram identificados pela t?cnica de ARDRA, dois
pertenceram a esp?cie B. tropica e tr?s a B. unamae. Um grande grupo, com 32 isolados,
apresentou mesmo perfil de restri??o pela t?cnica de ARDRA e diferiu das esp?cies
analisadas. O sequ?nciamento da regi?o 16S rDNA de dois destes isolados mostrou que eles
n?o pertencem ?s esp?cies j? descritas. Este grupo obtido de plantas de cana-de-a??car,
juntamente com isolados similares, obtidos de milho e abacaxi, foi descrito como uma nova
esp?cie de nome B. silvatlantica. A nova esp?cie de Burkholderia foi confirmada pelos
experimentos de hibridiza??o DNA:DNA, com apenas 30% de similaridade com a esp?cie
mais pr?xima. B. silvatlantica fixou nitrog?nio em condi??es microaerof?licas, n?o apresentou
capacidade de solubiliza??o de fosfato inorg?nico, n?o produziu horm?nios vegetais e n?o
apresentou capacidade de nodula??o em leguminosas. Estes resultados confirmaram que o
g?nero Burkholderia ? rico em esp?cies diazotr?ficas e est?o presentes em diferentes habitats.
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