Ce travail de thèse est consacré à la synthèse et la caractérisation structurale par spectroscopies RMN, IR, CD et RX de nouveaux oligomères non naturels qui s'inscrivent dans la famille des foldamères. Ils sont construits en particulier à partir d'un β-aminoacide bicyclique chiral original: l'acide (S)- ou (R)-aminobicyclo[2.2.2]octane-2-carboxylique ((S)- et (R) ABOC) que nous avons développé. Ce motif est issu d'une synthèse stéréocontrollée, dont l'étape clef est une réaction de Diels-Alder asymétrique. Après avoir montré que ce motif est un mime de coude peptidique il a été utilisé pour la synthèse de plusieurs séries d'oligomères. Deux grandes familles ont été développées: des oligourées et des oligoamides. A l'intérieur de ces familles, des homo- et des hétéro-oligomères ont été synthétisés et leur préférence conformationnelle a été définie. Les analyses RMN et les études cristallographiques ont permis de montrer qu'en fonction de leur séquence ils sont capables d'adopter plusieurs types d'hélices. Les homo-oligourées d'ABOC et des hétéro-oligourées alternant l'ABOC et des β3-aminoacides ont conduit à des hélices-12/14. Les oligoamides construits par des alternances d'ABOC et de β3-aminoacides dans un rapport 1/1 et des alternances d'ABOC et d'α-aminoacides dans un rapport 1/1 ou 1/2 ont conduit respectivement à des hélices 10/12, 16/18 et 12/14. / This thesis is devoted to the synthesis and FT-IR, CD, NMR and X-ray structural characterization of new unnatural oligomers belonging to the family of foldamers. In particular they are constructed from an original chiral bicyclic β-amino acid: (S)- and (R)-aminobicyclo[2.2.2]octane-2-carboxylic acid ((S) - and (R) ABOC ) that we have developed. This motive was obtained via a stereocontrolled synthesis using an asymmetric Diels-Alder reaction as key step. Firstly, this motive was shown to induce turn in peptide sequence and then it was used for the synthesis of several series of oligomers. Two main families were developed: oligoureas and oligoamides. Within these families, homo-and hetero-oligomers were synthesized and their conformational preferences were defined. NMR analysis and crystallographic studies have shown that depending on their sequence they are able to adopt several types of helices. ABOC homo-oligoureas and hetero-oligoureas containing both ABOC residue and β3-amino acid favor a 12/14-helix. Oligoamides with 1/1 alternation of ABOC and β3-amino acids, and heterogeneous backbones with 1/1 and 1/2 ABOC/α-amino acid residue patterns adopt 10/12-, 16/18- and 12/14-helix, respectively.

abstract: The energy required in a eukaryotic cell is provided by mitochondria. Mitochondrial electron transport chain (ETC) coupled with oxidative phosphorylation generates ATP. During electron transport, electron leakage from the ETC produces reactive oxygen species (ROS). In healthy cells, there are preventive and defense mechanisms in place to manage ROS. Maintaining a steady balance of ROS is very important because overproduction of ROS can lead to several pathological conditions. There are several strategies to prevent ROS production. Addition of external antioxidants is widely used among them. Discussed in the first part of Chapter 1 is the mitochondrial ETC, ROS production and antioxidant strategies. The second part of Chapter 1 is concerned with ribosomal protein synthesis in bacteria. Ribosome, the organelle that synthesizes proteins with exceptional fidelity, has a strong bias for α-L-amino acids. It has been demonstrated that reengineering of the peptidyltransferase center (PTC) of the ribosome could enable the incorporation of both α-D-amino acids and β-amino acids into full length protein. Oxidative stress is a common cause of various neurological disorders such as Alzheimer’s disease and Parkinson’s disease. Antioxidative strategies are used widely for the treatment of these disorders. Although several antioxidants demonstrated positive results in vitro as well as in in vivo models, none of them have been effective in clinical settings. Hence, there is an ongoing search for effective neuroprotective drugs. Described in Chapter 2 is the synthesis and biological evaluation of several methylene blue analogues as potentially effective antioxidants for the treatment of pathologies related to oxidative stress. In Chapter 3, the synthesis and ribosomal incorporation of several rationally designed dipeptidomimetic analogues are discussed. The dipeptidomimetic analogues are structurally similar to the GFP chromophore and, therefore, highly fluorescent. In addition, the backbone of the dipeptidomimetic analogues resemble the peptide backbone of a dipeptide, due to which they can be incorporated into protein by modified ribosomes selected for the incorporation of dipeptides. Discussed in Chapter 4 is the synthesis of the pdCpA derivatives of several β-amino acids. The pdCpA derivatives were ligated to tRNA-COH and were used as probes for studying the regio- and stereoselectivity of modified ribosomes. / Dissertation/Thesis / Doctoral Dissertation Chemistry 2016