Thesis (Ph. D.)--University of Rhode Island, 2006. / Typescript. Includes bibliographical references (leaves 175-188).

Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 2006. / Source: Dissertation Abstracts International, Volume: 67-07, Section: B, page: 3556. Adviser: Evan DeLucia. Includes bibliographical references. Available on microfilm from Pro Quest Information and Learning.

Thesis (M.S.)--Montana State University--Bozeman, 2007. / Typescript. Chairperson, Graduate Committee: Mark L. Skidmore. Includes bibliographical references (leaves 69-75).

No description available.

Thesis (M.S.)--University of Wyoming, 2007. / Title from PDF title page (viewed on Mar. 4, 2009). Includes bibliographical references (p. 21-28).

Marine sediments play an important role in the global carbon cycle, where they are ultimately important for recycling of carbon. At the sediment-water interface carbon is in constant movement both into and out of the sediment. However some environments are more important for the natural storage of carbon. Over long time scales this process has a role in climate regulation. Measuring the total O2 uptake represents a good proxy for the turnover of organic material at the sediment surface in oxygenated sediments, and equally the release of O2 represents benthic primary production. Many important biological processes are regulated by the availability of O2 at the seabed including: fauna composition and activity, phosphate exchange, nitrogen cycling and burial of organic material. Understanding of the rate and efficiency at which carbon turnover is occurring in marine sediments provides a valuable insight to the regulatory role they play in climate control. Investigation of marine sediments is best done in situ where possible, and the development of benthic “landers” has allowed measurements to be conducted at the sediment-water interface. Most recently, a novel approach known as “Eddy Correlation” (EC) has been developed. It allows quantification of the O2 exchange across any surface from simultaneous measurements of vertical velocity flow and oxygen concentration within the benthic boundary layer. The large sediment area accounted for; the high measuring frequency and the non-invasive nature are theoretical advantages over traditional methods such as benthic chamber incubations and O2 microprofiles. This study has shown that it is difficult to achieve consistent and improved measurements using EC compared to traditional methods due to the complex nature of the equipment and data analysis. Data does suggest that EC can be a strong complimentary tool for benthic carbon exchange studies. This project presents the first use of this technology across a range of benthic environments, from temperate coastal sediments and maerl beds to high-Arctic sediments and sea-ice. The method has allowed accurate quantification of the benthic remineralisation rates and carbon turnover efficiency in the coastal and maerl environments, but less so for the more complex under sea ice and cold Arctic environments. Rates presented agree well with other published studies documenting the use of this state-of-the-art technology.

abstract: Cities can be sources of nitrate to downstream ecosystems resulting in eutrophication, harmful algal blooms, and hypoxia that can have negative impacts on economies and human health. One potential solution to this problem is to increase nitrate removal in cities by providing locations where denitrification¬— a microbial process in which nitrate is reduced to N2 gas permanently removing nitrate from systems— can occur. Accidental urban wetlands– wetlands that results from human activities, but are not designed or managed for any specific outcome¬– are one such feature in the urban landscape that could help mitigate nitrate pollution through denitrification. The overarching question of this dissertation is: how do hydrology, soil conditions, and plant patches affect patterns of denitrification in accidental urban wetlands? To answer this question, I took a three-pronged approach using a combination of field and greenhouse studies. First, I examined drivers of broad patterns of denitrification in accidental urban wetlands. Second, I used a field study to test if plant traits influence denitrification indirectly by modifying soil resources. Finally, I examined how species richness and interactions between species influence nitrate retention and patterns of denitrification using both a field study and greenhouse experiment. Hydroperiod of accidental urban wetlands mediated patterns of denitrification in response to monsoon floods and plant patches. Specifically, ephemeral wetlands had patterns of denitrification that were largely unexplained by monsoon floods or plant patches, which are common drivers of patterns of denitrification in non-urban wetlands. Several plant traits including belowground biomass, above- and belowground tissue chemistry and rooting depth influenced denitrification indirectly by changing soil organic matter or soil nitrate. However, several other plant traits also had significant direct relationships with denitrification, (i.e. not through the hypothesized indirect relationships through soil organic matter or soil nitrate). This means these plant traits were affecting another aspect of soil conditions not included in the analysis, highlighting the need to improve our understanding of how plant traits influence denitrification. Finally, increasing species richness did not increase nitrate retention or denitrification, but rather individual species had the greatest effects on nitrate retention and denitrification. / Dissertation/Thesis / Doctoral Dissertation Biology 2016

Climate change is expected to have significant and uncertain impacts on methane (CH4) emissions from northern peatlands. Biogeochemical models can extrapolate site-specificCH(4) measurements to larger scales and predict responses of CH4 emissions to environmental changes. However, these models include considerable uncertainties and limitations in representing CH4 production, consumption, and transport processes. To improve predictions of CH4 transformations, we incorporated acetate and stable carbon (C) isotopic dynamics associated with CH4 cycling into a biogeochemistry model, DNDC. By including these new features, DNDC explicitly simulates acetate dynamics and the relative contribution of acetotrophic and hydro-genotrophic methanogenesis (AM and HM) to CH4 production, and predicts the C isotopic signature (delta C-13) in soil C pools and emitted gases. When tested against biogeochemical and microbial community observations at two sites in a zone of thawing permafrost in a subarctic peatland in Sweden, the new formulation substantially improved agreement with CH4 production pathways and delta C-13 in emitted CH4 (delta C-13-CH4), a measure of the integrated effects of microbial production and consumption, and of physical transport. We also investigated the sensitivity of simulated delta C-13-CH4 to C isotopic composition of substrates and, to fractionation factors for CH4 production (alpha(AM) and alpha(HM)), CH4 oxidation (alpha(MO)), and plant-mediated CH4 transport (alpha(TP)). The sensitivity analysis indicated that the delta C-13-CH4 is highly sensitive to the factors associated with microbial metabolism (alpha(AM), alpha(HM), and alpha(MO)). The model framework simulating stable C isotopic dynamics provides a robust basis for better constraining and testing microbial mechanisms in predicting CH4 cycling in peatlands.

Doctor of Philosophy / Department of Biology / Walter K. Dodds / We used a series of whole stream experiments to quantify the impacts of inorganic-nitrogen concentration on stream nitrogen cycling and transport in prairie streams. We conducted 15NO3- stable isotope tracer experiments to measure the nitrogen cycling dynamics in 9 streams with a wide range (over 5 orders of magnitude) of nitrate concentrations. The major nitrogen-transforming processes, including uptake, nitrification, and denitrification, increased approximately 2 to 3 orders of magnitude and did not show signs of Michaelis-Menten type saturation across streams. Denitrification only accounted for a small proportion of total nitrate uptake. The observed functional relationships of biological nitrogen transformations and chronic nitrate concentration were best described by a Log-Log relationship. A series of inorganic-nitrogen addition experiments were conducted to quantify the impacts of acute nitrogen inputs on nitrogen cycling. These experiments showed that uptake saturated in response to short-term pulses of nitrogen. Ambient concentrations of ammonium and nitrate were less than their respective half-saturation coefficients, and uptake rates were less than 5% of Vmax, suggesting severe limitation of nitrogen. The saturation of uptake due to acute nitrogen inputs contrasts with uptake associated with chronic inputs of nitrate, which was not found to saturate. Chamber experiments and whole-stream ammonium addition experiments demonstrated that uptake and mineralization of ammonium varies spatially within the stream channel, occurring predominantly in riffles as opposed to pool habitats. The total transport distance of nitrogen and carbon within prairie streams was estimated based on field measurements and nutrient spiraling theory. Transport of organic nitrogen was dominant in prairie streams, as compared to inorganic nitrogen transport, both in terms of total concentration and transport distance. These results indicate that although carbon and inorganic-nitrogen were highly conserved in these headwater streams, organic-nitrogen was much more readily transported.

Coastline communities have experienced a marked increase in human populations over the last few decades. This increase in population places disproportionate pressure on coastal ecosystems to provide economic services to support local economies. At the same time, overuse of these services can aid in the destruction of the ecosystems responsible for them. Seagrass ecosystems are mainly found near coastlines, and are typically a chief provider of some of these economic goods and services. Many previous studies have documented the ecological functions of this seagrasses. Unfortunately, our increasing knowledge of seagrass structure and function has not been fully incorporated into economic models estimating their value. In this dissertation, I focus on the seagrass ecosystem in southern Biscayne Bay, and simultaneously study the ecological dynamics of the seagrass beds, and estimate its economic value. This value is based on recent ecological models in the literature as well as data I collected from the system. I focused on Biscayne Bay due to, 1) the relevance that this question had to the relationship between Biscayne Bay and the Miami metropolis, and 2) the lack of existing reliable models that explore this relationship in this area. More specifically, I became very interested in this question while working for Biscayne National Park, where such a model would have improved seagrass restoration work taking place there. I found that southern Biscayne Bay is dominated by Thalassia testudinum, with other seagrasses following a spatial pattern primarily determined by salinity and water column nutrient distribution. Syringodium filiforme was mostly found east of the islands, Halodule wrightii was mostly found near the shoreline, and Halophila engelmenii was spotted at only two of the 190 sites visited. T. testudinum distribution was largely unaffected by nutrient enrichment at all sites, but it appeared to induce severe herbivory further from the coastline. For the calendar year 2004, we deduced using a Total Ecosystems Valuation (TEV) model that seagrass ecosystems potentially contributed over $198 million US dollars to the local economy. We argue that a simultaneous understanding and use of both ecological and economic models is important for future conservation efforts of seagrass ecosystems.