京都大学 / 0048 / 新制・課程博士 / 博士(生命科学) / 甲第20523号 / 生博第365号 / 新制||生||48(附属図書館) / 京都大学大学院生命科学研究科統合生命科学専攻 / (主査)教授 西田 栄介, 教授 松本 智裕, 教授 豊島 文子 / 学位規則第4条第1項該当 / Doctor of Philosophy in Life Sciences / Kyoto University / DFAM

Neuropeptide und ihre Rezeptoren regulieren im menschlichen Körper essentielle Funktionen. Fehlfunktionen können zu schwerwiegenden Krankheiten führen, weswegen die Erforschung dieser Peptid-Rezeptor-Systeme von hohem Wert ist. Die Komplexität der Signalisierung erschwert die Forschung in Säugetiermodellen, weswegen auch Modelle von Invertebraten herangezogen werden können, wo viele homologe Neuropeptide zu finden sind. In dieser Arbeit wurde das ein Homolog zum Neuropeptid Y (NPY) im Rundwurm Caenorhabditis elegans (C. elegans) identifiziert und charakterisiert. Das NPY-System besteht aus 3 Peptiden und 4 Rezeptoren, welche in Säugetieren vor allem den Energiehaushalt regulieren, aber auch bei Stress, Depression und Angstzuständen eine Rolle spielen. In C. elegans wurden 41 dem NPY ähnliche Rezeptoren (NPR) und über 30 Neuropeptide identifiziert, welche auch Funktionen in der Nahrungssuche zeigen. In dieser Arbeit wurde gezeigt, dass das humane und C. elegans System pharmakologische und funktionale Gemeinsamkeiten aufweisen. Hier wurden der NPR-1 und NPR-11 als NPY-ähnlichste Rezeptoren identifiziert und erstmals ein NPY-ähnliches Peptid beschrieben, das FLP-34-1. Des Weiteren wurde eine bekannte Methode für Zellkulturexperimente in C. elegans etabliert, der Biolumineszenz-Energietransfer (BRET), welcher die Bindung von FLP-34-1 an NPR-11 in vivo zeigte. Zudem konnte mit dieser Methode eine Peptid-induzierte Internalisierung von NPR-11 Richtung Endosomen in vivo in Echtzeit gezeigt werden. Die Ergebnisse dieser Arbeit helfen die molekularen Mechanismen der Peptid-Rezeptor-Interaktionen besser zu verstehen und unterstützen damit auch die Forschung an höheren Tieren.

mRNA molecules form an intermediate in the transfer of sequences from DNA to ribosomes in order to guide protein production. Errors can be introduced into mRNA, producing aberrant proteins which place a strain on cellular regulatory machinery, causing increased risks of apoptosis, cancer, and decreased fitness. These errors may be introduced due to decreased transcriptional proofreading capabilities, exposure to chemicals, or mistakes in RNA editing machinery. It is important to investigate these causes of transcription errors to better understand the long-neglected area of mRNA fidelity which has such significant impacts on our cellular functions. In this paper, it was determined that addition of adenine opposite from abasic sites, not genomic uracil pairing with adenine, are a probable cause of G-to-A transcription errors. That exposure to Roundup causes increased levels of transcription errors, potentially due to oxidative stress. And finally, that off-target ADAR gene editing of transcripts occurs at high levels.

During C. elegans embryogenesis, the DD, DA, and DB motor neurons arise from left and right lineages, move towards the midline and intercalate into a single tract to form the ventral nerve cord (VNC). Recently, the non-canonical Wnt-planar cell polarity was shown to regulate cell intercalation during VNC assembly. Disruption of this pathway causes DD neurons to shift anteriorly along the anterior-posterior (AP)-axis. Here, we investigated the role of the canonical Wnt-β-catenin pathway in positioning neurons in the VNC. Mutations in canonical Wnt pathway components, including bar-1/β-catenin and pop-1/TCF, cause the anterior displacement of DD2 towards DD1. In contrast, disruption of the β-catenin destruction complex gene pry-1/Axin results in the posterior displacement of DD1 towards DD2. In order to determine where and when defects occur, we used fluorescent time-lapse imaging to follow DD, DA and RIG neuroblasts during embryogenesis. In wild-type, we found that RIGL and DA2 intercalate between DD1 and DD2 via T1-type cell neighbor exchanges. Dorsal-ventral (DV) constriction of the DD1 and DD2 cell junction results in these cells meeting at a central vertex, which then resolves when the RIGL and DA2 cell junction expands along the AP axis. The resolution of the central vertex results in the spatial displacement of DD1 and DD2 along the AP axis. However, in Wnt-β-catenin mutants, central vertex resolution defects result in decreased spacing between DD1 and DD2 that persist into adulthood.

Studies of the interaction of the relevant metal, metalloid or nanoparticulate species with biological systems are underpinned by the provision of reliable information about chemical composition of the relevant materials. Often, no methods of chemical analysis are available. The work described in this dissertation centers on developing methods to help with studies for a variety of analytes and samples. A method was developed for the determination of 11 trace elements (As, Cd, Co, Cr, Cu, Fe, Mg, Mn, Pb, Ti, and Zn) in human breast milk and infant formulas by inductively coupled plasma optical emission spectrometry (ICP-OES) following microwave-assisted digestion. A method was established for the determination of trace elements, with an emphasis on titanium as titanium dioxide, in snack foods and consumer products. The interactions of some dissolved metals, including rare earth elements, and metallo-nanoparticles (silver, gold, titanium dioxide, aluminum oxide, and iron) with aquatic plants were studied. After exposure in a variety of mesocosms, the partitioning of the elemental species between various compartments was quantified by ICP-MS and ICP-OES following microwave-assisted digestion. An ICP mass spectrometry (MS) method has also been developed to quantify the uptake of gold and silver nanoparticles by C. elegans. Uptake of gold nanoparticles was size dependent, suggesting increased ingestion efficiency with increased particle diameter. The feasibility of discriminating between suspended TiO2 nanoparticles and dissolved titanium by the analysis of the rapid transient signal events obtained from the ICP-MS instrument operated in a rapid response mode was also developed. Data handling parameters were established that allowed a distinction in the signals for nanoparticulate and standard solutions. Spikes in the signal were defined by distinct parameters using the mean and standard deviation, where a spike in the signal was defined as a signal > + ks (k =3). This approach however did lead to a statistical difference in the spike signal events for solutions and nanosuspensions.

Many diseases, such as Parkinson's disease and heavy metal poisoning, are associated with impaired or aberrant locomotion. Because the underlying mechanisms are difficult to study in humans, simpler metazoans like Caenorhabditis elegans are commonly employed to model these diseases. C. elegans is especially useful in this respect because its innate electrotactic behaviour allows instantaneous manipulation of its locomotion using mild electric fields in a microfluidic environment, the results of which can be captured on video. However, extraction of locomotory data from these videos is a major bottleneck to the throughput of the microfluidic electrotaxis platform. In the present study, we describe the development of novel software to analyze electrotaxis videos in an automated fashion. The software, dubbed the Automated Nematode Tracking System (ANTS), uses efficient, parameterless computer vision techniques to simultaneously track and assess movement characteristics of ambulating animals. In combination with the previously described microfluidic electrotaxis platform, ANTS promises to accelerate research with C. elegans models of locomotory dysfunction. / Thesis / Master of Applied Science (MASc)

Indiana University-Purdue University Indianapolis (IUPUI) / Nicotine addiction is an extremely costly and widespread issue that affects millions of people globally and current treatments have relatively low long term efficacy rates. This demonstrates the need for a greater understanding of nicotine addiction and its underlying mechanisms. This study created a C. elegans model of compulsive nicotine use. C. elegans, that were pretreated with nicotine (9.7 μM or 120 μM) from larval stage 4 to gravid adulthood, demonstrated reduced aversion to 10% nonanone in the presence of nicotine compared to untreated worms. The pretreatment concentration of 9.7 μM nicotine was chosen for further study due to its ability to induce aversion resistance without significant changes to locomotor speed, food preference, or benzaldehyde preference. This model was then applied to nicotinic acetylcholine (acr-5, acr-15, acr-16) and dopamine (dop-1, dop-2) receptor knockout mutants to determine the roles of these receptors in the development of aversion resistance. For the acr-5, acr-15, and acr-16 mutants, there was an increase in preference following the administration of 10% nonanone, regardless of pretreatment condition, suggesting that the removal of these receptors induces aversion resistance. For the dop-1 receptor mutant, 10-minute timepoint nicotine preference was reduced following preexposure. For the dop-2 receptor mutant, aversion was enhanced at the 5 mM and 50 mM test concentrations following the administration of 10% nonanone, suggesting that the dop-2 receptor is partially responsible for the development of aversion resistance. Additional research should be conducted to determine the underlying mechanisms of this drug induced aversion resistance. With current the lack of highly efficacious nicotine cessation drugs, this model could be used to test novel therapeutic drugs in a rapid high throughput manner.

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