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Parameter Estimation in Biological Cell Cycle Models Using Deterministic OptimizationZwolak, Jason W. 28 February 2002 (has links)
Cell cycle models used in biology can be very complex. These models have parameters with initially unknown values. The values of the parameters vastly aect the accuracy of the models in representing real biological cells. Typically people search for the best parameters to these models using computers only as tools to run simulations. In this thesis methods and results are described for a computer program that searches for parameters to a series of related models using well tested algorithms. The code for this program uses ODRPACK for parameter estimation and LSODAR to solve the dierential equations that comprise the model. / Master of Science
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The asymptotic stability of stochastic kernel operatorsBrown, Thomas John 06 1900 (has links)
A stochastic operator is a positive linear contraction, P : L1 --+ L1,
such that
llPfII2 = llfll1 for f > 0. It is called asymptotically stable if the iterates pn f of
each density converge in the norm to a fixed density. Pf(x) = f K(x,y)f(y)dy,
where K( ·, y) is a density, defines a stochastic kernel operator. A general probabilistic/
deterministic model for biological systems is considered. This leads to the
LMT operator
P f(x) = Jo - Bx H(Q(>.(x)) - Q(y)) dy,
where -H'(x) = h(x) is a density. Several particular examples of cell cycle models
are examined. An operator overlaps supports iffor all densities f,g, pn f APng of 0
for some n. If the operator is partially kernel, has a positive invariant density and
overlaps supports, it is asymptotically stable. It is found that if h( x) > 0 for
x ~ xo ~ 0 and
["'" x"h(x) dx < liminf(Q(A(x))" - Q(x)") for a E (0, 1] lo x-oo
then P is asymptotically stable, and an opposite condition implies P is sweeping.
Many known results for cell cycle models follow from this. / Mathematical Science / M. Sc. (Mathematics)
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The asymptotic stability of stochastic kernel operatorsBrown, Thomas John 06 1900 (has links)
A stochastic operator is a positive linear contraction, P : L1 --+ L1,
such that
llPfII2 = llfll1 for f > 0. It is called asymptotically stable if the iterates pn f of
each density converge in the norm to a fixed density. Pf(x) = f K(x,y)f(y)dy,
where K( ·, y) is a density, defines a stochastic kernel operator. A general probabilistic/
deterministic model for biological systems is considered. This leads to the
LMT operator
P f(x) = Jo - Bx H(Q(>.(x)) - Q(y)) dy,
where -H'(x) = h(x) is a density. Several particular examples of cell cycle models
are examined. An operator overlaps supports iffor all densities f,g, pn f APng of 0
for some n. If the operator is partially kernel, has a positive invariant density and
overlaps supports, it is asymptotically stable. It is found that if h( x) > 0 for
x ~ xo ~ 0 and
["'" x"h(x) dx < liminf(Q(A(x))" - Q(x)") for a E (0, 1] lo x-oo
then P is asymptotically stable, and an opposite condition implies P is sweeping.
Many known results for cell cycle models follow from this. / Mathematical Science / M. Sc. (Mathematics)
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